ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20b06 |
|---|---|
| Clone Library Name | barley_pub |
>OREX_RAT (O55232) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A| (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)] Length = 130 Score = 32.0 bits (71), Expect = 1.2 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +2 Query: 125 GAPGRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLRDG---VPGLRRRAEVEPHR-PGER 292 GA A G +RRPG L+G +Q L Q G G R AE+EP+ PG R Sbjct: 54 GAGNHAAGILTLGKRRPGPPGLQGRLQRLLQANGNHAAGILTMGRRAGAELEPYPCPGRR 113 Query: 293 C 295 C Sbjct: 114 C 114
>OREX_PIG (O77668) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A| (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)] Length = 131 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +2 Query: 125 GAPGRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLR-DGVPGLRRRAEVEPHR---PGER 292 GA A G +RRPG L+G +Q L Q G G+ + RRA EP PG R Sbjct: 55 GAGNHAAGILTLGKRRPGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRLCPGRR 114 Query: 293 C 295 C Sbjct: 115 C 115
>OREX_CANFA (Q9GLF6) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A| (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)] Length = 130 Score = 31.6 bits (70), Expect = 1.6 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 4/61 (6%) Frame = +2 Query: 125 GAPGRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLR-DGVPGLRRRAEVEPHR---PGER 292 GA A G +RRPG L+G +Q L Q G G+ + RRA EP PG R Sbjct: 54 GAGNHAAGILTLGKRRPGPPGLQGRLQRLLQASGNHAAGILTMGRRAGAEPAPRPCPGRR 113 Query: 293 C 295 C Sbjct: 114 C 114
>Y2664_MYCBO (P59975) UPF0027 protein Mb2664| Length = 432 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Frame = -2 Query: 501 CIDHVEQSQQAMQCNGIAVP----SCTSVSNP 418 C DHV Q +QAM GIAVP +C V +P Sbjct: 204 CTDHVRQMEQAMGRYGIAVPDRQLACVPVHSP 235
>Y2631_MYCTU (P71930) UPF0027 protein Rv2631/MT2707| Length = 432 Score = 31.2 bits (69), Expect = 2.1 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Frame = -2 Query: 501 CIDHVEQSQQAMQCNGIAVP----SCTSVSNP 418 C DHV Q +QAM GIAVP +C V +P Sbjct: 204 CTDHVRQMEQAMGRYGIAVPDRQLACVPVHSP 235
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 30.8 bits (68), Expect = 2.7 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +2 Query: 101 AAPVDRGVGAP-GRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLRDGVPGL 250 +AP + G P GRA G ++ RRR G RG Q +GPG V GL Sbjct: 473 SAPEGQAGGGPRGRARGPRQQARRRHGPQRRRGPPQAGEEGPGDATLVLGL 523
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 30.8 bits (68), Expect = 2.7 Identities = 25/68 (36%), Positives = 28/68 (41%) Frame = +2 Query: 140 ANGFQRGVRRRPGQDLLRGDVQDLRQGPGLRDGVPGLRRRAEVEPHRPGERCRGGRRHVL 319 A G +RG RR G R GPG DG+ RRRA PG+R G Sbjct: 137 ARGGRRGRRRGRG-----------RGGPGAADGLSDPRRRAPRTNRNPGDRPGAGWTDG- 184 Query: 320 PAEIHGRA 343 P HG A Sbjct: 185 PGAPHGEA 192
>IE63_HHV2H (P28276) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 30.8 bits (68), Expect = 2.7 Identities = 23/66 (34%), Positives = 24/66 (36%) Frame = +2 Query: 146 GFQRGVRRRPGQDLLRGDVQDLRQGPGLRDGVPGLRRRAEVEPHRPGERCRGGRRHVLPA 325 G +RG RR G R GPG D P RRR H G R R P Sbjct: 139 GGRRGRRRGRG-----------RYGPGGADSTPKPRRRVSRNAHNQGGRHPASARTDGPG 187 Query: 326 EIHGRA 343 HG A Sbjct: 188 ATHGEA 193
>DEPP_PONPY (Q5RBE4) Protein DEPP| Length = 212 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 18/86 (20%) Frame = +2 Query: 161 VRRRPGQDLLRGDVQDLRQGPGLRDGVPGLRRRAEVE--------------PHRPGERCR 298 +R + LL G Q+ P L D V + R A+ PHRP + CR Sbjct: 15 IRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQGQPRPPHRPAQACR 74 Query: 299 GGRRHV----LPAEIHGRAAPLKVAD 364 GR V + A G+ L +AD Sbjct: 75 KGRPAVSLRDITARFSGQQPTLPMAD 100
>DEPP_HUMAN (Q9NTK1) Protein DEPP (Decidual protein induced by progesterone)| (Fasting-induced gene protein) (FIG) Length = 212 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 18/86 (20%) Frame = +2 Query: 161 VRRRPGQDLLRGDVQDLRQGPGLRDGVPGLRRRAEVE--------------PHRPGERCR 298 +R + LL G Q+ P L D V + R A+ PHRP + CR Sbjct: 15 IRETTEEMLLGGPGQEPPPSPSLDDYVRSISRLAQPTSVLDKATAQGQPRPPHRPAQACR 74 Query: 299 GGRRHV----LPAEIHGRAAPLKVAD 364 GR V + A G+ L +AD Sbjct: 75 KGRPAVSLRDITARFSGQQPTLPMAD 100
>HM20B_HUMAN (Q9P0W2) SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily E member 1-related (SMARCE1-related protein) (HMG domain protein HMG20B) (Structural DNA-binding protein BRAF35) (BRCA2-associated factor 35) (Sox-lik Length = 317 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/66 (27%), Positives = 31/66 (46%) Frame = +2 Query: 86 PRLDTAAPVDRGVGAPGRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLRDGVPGLRRRAE 265 P+ AA G APG+ GF V++ G+ G+ + P + G P ++R + Sbjct: 5 PKQPGAAAAPAGGKAPGQHGGFVVTVKQERGEGPRAGEKGSHEEEPVKKRGWPKGKKRKK 64 Query: 266 VEPHRP 283 + P+ P Sbjct: 65 ILPNGP 70
>HEM3_HALSA (Q9HMY5) Probable porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 396 Score = 30.0 bits (66), Expect = 4.6 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = +2 Query: 164 RRRPGQDLLRGDVQDLRQGP-GLRDGVPGLRRRAEVEPHRPG 286 R P L+ D DL P G G LRR A+V+ HRPG Sbjct: 99 RENPADVLVTPDGTDLEDLPAGSVVGTASLRRGAQVQAHRPG 140
>EWS_HUMAN (Q01844) RNA-binding protein EWS (EWS oncogene) (Ewing sarcoma| breakpoint region 1 protein) Length = 656 Score = 29.6 bits (65), Expect = 6.0 Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Frame = +2 Query: 113 DRGVGAPGRANGFQRGVRRRPGQDLL-----RGDVQDLRQGPGL-RDGVPGLRRRAEVEP 274 DRG G PG G + G+ R G + GD R G G+ R G G RR P Sbjct: 562 DRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGP 621 Query: 275 HRPGERCRGGRR 310 P GGRR Sbjct: 622 PGPLMEQMGGRR 633
>EWS_MOUSE (Q61545) RNA-binding protein EWS| Length = 655 Score = 29.6 bits (65), Expect = 6.0 Identities = 26/72 (36%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Frame = +2 Query: 113 DRGVGAPGRANGFQRGVRRRPGQDLL-----RGDVQDLRQGPGL-RDGVPGLRRRAEVEP 274 DRG G PG G + G+ R G + GD R G G+ R G G RR P Sbjct: 561 DRGRGGPGGMRGGRGGLMDRGGPGGMFRGGRGGDRGGFRGGRGMDRGGFGGGRRGGPGGP 620 Query: 275 HRPGERCRGGRR 310 P GGRR Sbjct: 621 PGPLMEQMGGRR 632
>MINC_SALTY (P65359) Septum site-determining protein minC| Length = 235 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%) Frame = -1 Query: 277 MRLHLCSPPETRHAV--------AKSRTLPKILNIS-TE*ILSWP-----AANTALESIG 140 + LH P R A+ A + P ++N+S E ++WP +T L IG Sbjct: 18 VHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRIIG 77 Query: 139 ASGCADASV 113 SGC DAS+ Sbjct: 78 VSGCKDASL 86
>MINC_SALTI (P65360) Septum site-determining protein minC| Length = 235 Score = 29.6 bits (65), Expect = 6.0 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 14/69 (20%) Frame = -1 Query: 277 MRLHLCSPPETRHAV--------AKSRTLPKILNIS-TE*ILSWP-----AANTALESIG 140 + LH P R A+ A + P ++N+S E ++WP +T L IG Sbjct: 18 VHLHEAEPEVIRQALEDKIAQAPAFLKHAPVVINVSGLESPVNWPELHKIVTSTGLRIIG 77 Query: 139 ASGCADASV 113 SGC DAS+ Sbjct: 78 VSGCKDASL 86
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = +2 Query: 92 LDTAAPVDRGVGAPGRANGFQRGVRRRPGQDLLRGDV 202 LD P++ G+ APG A G R ++ R ++L+G V Sbjct: 117 LDNGDPLEGGIPAPGAAQGGLRELQLRSLTEILKGGV 153
>OREX_MOUSE (O55241) Orexin precursor (Hypocretin) (Hcrt) [Contains: Orexin-A| (Hypocretin-1) (Hcrt1); Orexin-B (Hypocretin-2) (Hcrt2)] Length = 130 Score = 29.3 bits (64), Expect = 7.9 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%) Frame = +2 Query: 125 GAPGRANGFQRGVRRRPGQDLLRGDVQDLRQGPGLRDG---VPGLRRRAEVEPH 277 GA A G +RRPG L+G +Q L Q G G R AE+EPH Sbjct: 54 GAGNHAAGILTLGKRRPGPPGLQGRLQRLLQANGNHAAGILTMGRRAGAELEPH 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,990,958 Number of Sequences: 219361 Number of extensions: 1536635 Number of successful extensions: 4816 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4585 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4812 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
