ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags20a17 |
|---|---|
| Clone Library Name | barley_pub |
>ICB1_MOUSE (Q91YX0) Induced by contact to basement membrane 1 protein homolog| (ICB-1 protein) Length = 663 Score = 32.7 bits (73), Expect = 0.46 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +2 Query: 257 RLLLEISECKQTLEQESNITASFPAAVQEMDTKSLEEEYKALQGDRAGEAQYFQSLEERI 436 +++ E E QTLE N T F ++LE+ A+ + YF+S + + Sbjct: 59 KVVCEYPETGQTLELNPNFTGLFSPLTSLRSYRTLEDLVSAMPQNSTRWPIYFKSTQRIV 118 Query: 437 IKMKVVPD 460 K VVP+ Sbjct: 119 TKASVVPE 126
>BRE1B_RAT (Q8CJB9) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (Syntaxin-1-interacting RING finger protein) (Protein staring) Length = 1002 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 62 KLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLN----LXRSIXKESDAGKK 229 ++++ + ++ + KL AT+ EA +S+ + G ++ L + + ++ DA K Sbjct: 730 RIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFK 789 Query: 230 QLDIRAKGSRLLLEISECKQTL-EQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 + R K +++ + E K L EQ + + A Q + + LEE+ +ALQG G Sbjct: 790 LMSERIKANQIHKLLREEKDELGEQVLGLKSQVDA--QLLTVQKLEEKERALQGSLGG 845
>BRE1B_PONPY (Q5RAU7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 62 KLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLN----LXRSIXKESDAGKK 229 ++++ + ++ + KL AT+ EA +S+ + G ++ L + + ++ DA K Sbjct: 729 RIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFK 788 Query: 230 QLDIRAKGSRLLLEISECKQTL-EQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 + R K +++ + E K L EQ + + A Q + + LEE+ +ALQG G Sbjct: 789 LMSERIKANQIHKLLREEKDELGEQVLGLKSQVDA--QLLTVQKLEEKERALQGSLGG 844
>BRE1B_MOUSE (Q3U319) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 62 KLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLN----LXRSIXKESDAGKK 229 ++++ + ++ + KL AT+ EA +S+ + G ++ L + + ++ DA K Sbjct: 729 RIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFK 788 Query: 230 QLDIRAKGSRLLLEISECKQTL-EQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 + R K +++ + E K L EQ + + A Q + + LEE+ +ALQG G Sbjct: 789 LMSERIKANQIHKLLREEKDELGEQVLGLKSQVDA--QLLTVQKLEEKERALQGSLGG 844
>BRE1B_MACFA (Q4R7K7) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) Length = 1001 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 62 KLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLN----LXRSIXKESDAGKK 229 ++++ + ++ + KL AT+ EA +S+ + G ++ L + + ++ DA K Sbjct: 729 RIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFK 788 Query: 230 QLDIRAKGSRLLLEISECKQTL-EQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 + R K +++ + E K L EQ + + A Q + + LEE+ +ALQG G Sbjct: 789 LMSERIKANQIHKLLREEKDELGEQVLGLKSQVDA--QLLTVQKLEEKERALQGSLGG 844
>BRE1B_HUMAN (O75150) Ubiquitin-protein ligase BRE1B (EC 6.3.2.-) (BRE1-B) (RING| finger protein 40) (95 kDa retinoblastoma-associated protein) (RBP95) Length = 1001 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 5/118 (4%) Frame = +2 Query: 62 KLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLN----LXRSIXKESDAGKK 229 ++++ + ++ + KL AT+ EA +S+ + G ++ L + + ++ DA K Sbjct: 729 RIRQAEEQIEHLQRKLGATKQEEEALLSEMDVTGQAFEDMQEQNGRLLQQLREKDDANFK 788 Query: 230 QLDIRAKGSRLLLEISECKQTL-EQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 + R K +++ + E K L EQ + + A Q + + LEE+ +ALQG G Sbjct: 789 LMSERIKANQIHKLLREEKDELGEQVLGLKSQVDA--QLLTVQKLEEKERALQGSLGG 844
>YDFP_ECOLI (P76158) Hypothetical protein ydfP precursor| Length = 165 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 10/97 (10%) Frame = +2 Query: 179 VLNLXRSIXKES---DAGKKQLDIRAKGSRLLLEISECKQTLEQ------ESNITASFPA 331 ++ R+I ++ DA +K +I A+ + L +++ + ++ + TA A Sbjct: 50 IIEQGRTIARDEAVKDAQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAKHTADLAA 109 Query: 332 AVQEMDTKSLEEEYKALQGDRAGEAQ-YFQSLEERII 439 AV+ TK+ E + GD A EAQ Y + +ER I Sbjct: 110 AVRGKTTKTAEGMLTNMLGDIAAEAQLYAEIADERYI 146
>VMP21_BORHE (P21875) Variable major outer membrane lipoprotein 21 precursor| Length = 364 Score = 30.4 bits (67), Expect = 2.3 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 14/93 (15%) Frame = +2 Query: 152 NFFGGKRXEVLNLXRSIXKESDAGKKQLDIRAKGSRLLLEISECKQTLEQ---------- 301 N GGK E N + K S+AG ++ D A + + ++ K+TLE Sbjct: 93 NSLGGKLGEASNELEQVAKNSEAGIEKND--ASKNPIRSAVNAAKKTLEALKGYLDSLGT 150 Query: 302 --ESNIT--ASFPAAVQEMDTKSLEEEYKALQG 388 +SN AS A +D L++ YKAL+G Sbjct: 151 VGDSNPVGWASNNAQGAAVDEAELKKAYKALKG 183
>RAD50_METTH (O26640) DNA double-strand break repair rad50 ATPase| Length = 837 Score = 30.0 bits (66), Expect = 3.0 Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%) Frame = +2 Query: 44 LETLSVKLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLNLXRSIXKE---- 211 +E KL+ L +KN++ + E +E+ ++ ++ RSI +E Sbjct: 230 IEAEIAKLKSEMEVLQREKNRIESAEREIESLQNEIETLRSSSERLMERNRSIEEEYRRS 289 Query: 212 SDAGKKQLDIRAKGSRLLLEISECKQTLE--QESNITASFPAAVQEMDTKSLEEEY---- 373 D +K DIR K L + E LE +ES + S + ++L E Sbjct: 290 LDELQKCSDIREKLQEELNSLGERISALELKRESLMDDSRRFREASIQYRNLVSELENLI 349 Query: 374 ---KALQGDRAGEAQYFQSLEERIIKMKVVPDP 463 + L+ + +G Y ++ +I M+ + DP Sbjct: 350 KTGRDLEDEISGLEDYTDRIKSKIESMESIEDP 382
>GLH3_CAEEL (O01836) ATP-dependent RNA helicase glh-3 (EC 3.6.1.-) (Germline| helicase 3) Length = 720 Score = 30.0 bits (66), Expect = 3.0 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +2 Query: 284 KQTLEQESNITASFPAAVQEMDTKSLEEEYKALQGDRAGEA 406 K Q +A+FP++VQE K L E+Y + D+ G A Sbjct: 482 KNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAA 522
>CCHCR_MOUSE (Q8K2I2) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 770 Score = 29.6 bits (65), Expect = 3.9 Identities = 33/130 (25%), Positives = 49/130 (37%) Frame = +2 Query: 47 ETLSVKLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLNLXRSIXKESDAGK 226 E LS Q HQ LDS +K E N KR KE+D + Sbjct: 177 EQLSSLTQAHQKALDSLASK-------AEGLEKSLNSLETKRAGEAKQLAMAQKEADMLR 229 Query: 227 KQLDIRAKGSRLLLEISECKQTLEQESNITASFPAAVQEMDTKSLEEEYKALQGDRAGEA 406 QL + + + E + E + FP+ E++ K L + K L+ DRA Sbjct: 230 NQLSKTQEELEAQVTLVESLRKYVGEQ-VLPEFPSQEWELERKELLDTLKHLKEDRADLQ 288 Query: 407 QYFQSLEERI 436 + L+ R+ Sbjct: 289 ATVELLQVRV 298
>HOOK3_HUMAN (Q86VS8) Hook homolog 3 (hHK3)| Length = 718 Score = 29.3 bits (64), Expect = 5.1 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Frame = +2 Query: 53 LSVKLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLNLXRSIXKESDAGKKQ 232 L KL+EH L N+L +E + N K E+ R +E KQ Sbjct: 544 LKKKLEEHLEKLHEANNELQKKRAIIEDLEPRFNNSSLKIEELQEALRKKEEEM----KQ 599 Query: 233 LDIRAKGSRLLLEISECKQTLEQESNITAS-----FPAAVQEMDT--KSLEEEYKALQGD 391 ++ R K + L + +TL+ + N A+ +QE D SLE+EY+ + Sbjct: 600 MEERYK--KYLEKAKSVIRTLDPKQNQGAAPEIQALKNQLQERDRLFHSLEKEYEKTKSQ 657 Query: 392 RAGEAQYFQS 421 R E +Y S Sbjct: 658 REMEEKYIVS 667
>CLPB_RHIME (Q92MK7) Chaperone clpB| Length = 868 Score = 29.3 bits (64), Expect = 5.1 Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 1/123 (0%) Frame = +2 Query: 44 LETLSVKLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEVLNLXRS-IXKESDA 220 L L K ++H SD + LVA ++ F K ++++ S + + D+ Sbjct: 351 LRGLKEKYEQHHKVRISD-SALVAAAALSNRYITD-RFLPDKAIDLMDEAASRLRMQVDS 408 Query: 221 GKKQLDIRAKGSRLLLEISECKQTLEQESNITASFPAAVQEMDTKSLEEEYKALQGDRAG 400 ++LD + R ++++ ++ L++E+++++ A E+D SLEEE AL Sbjct: 409 KPEELD---ELDRRVIQLKIEREALKKETDVSSKDRLAKLELDLSSLEEEAAALTARWQA 465 Query: 401 EAQ 409 E Q Sbjct: 466 EKQ 468
>PGBA_HELPJ (Q9ZLW8) Plasminogen-binding protein pgbA| Length = 450 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = +2 Query: 197 SIXKESDAGKKQLDIRAKGSRLLLEISECKQTLEQESNITASFPAAVQEMDTKSLEEEYK 376 S+ KES A K+ +K + L+ + K EQ + QE D K LEE K Sbjct: 384 SVLKESAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRK 443 Query: 377 ALQ 385 AL+ Sbjct: 444 ALE 446
>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)| Length = 2663 Score = 28.9 bits (63), Expect = 6.7 Identities = 34/150 (22%), Positives = 66/150 (44%), Gaps = 1/150 (0%) Frame = +2 Query: 2 LQNLATKDYFTQRXLETLSVKLQEHQGWLDSDKNKLVATEPFVEAXMSKXNFFGGKRXEV 181 L+ T+D Q L+ + + L+EHQ + DK + + +E K E+ Sbjct: 1709 LRETITRDLEKQEELKIVHMHLKEHQETI--DKLRGIVSE---------------KTNEI 1751 Query: 182 LNLXRSIXKESDAGKKQ-LDIRAKGSRLLLEISECKQTLEQESNITASFPAAVQEMDTKS 358 N+ + + +DA K Q L I+ + + + E ++T+++ I + + M K Sbjct: 1752 SNMQKDLEHSNDALKAQDLKIQEELRIAHMHLKEQQETIDKLRGIVSEKTDKLSNMQ-KD 1810 Query: 359 LEEEYKALQGDRAGEAQYFQSLEERIIKMK 448 LE LQ + Q ++ E ++I +K Sbjct: 1811 LENSNAKLQ----EKIQELKANEHQLITLK 1836
>PGBA_HELPY (O25249) Plasminogen-binding protein pgbA| Length = 452 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/63 (30%), Positives = 30/63 (47%) Frame = +2 Query: 206 KESDAGKKQLDIRAKGSRLLLEISECKQTLEQESNITASFPAAVQEMDTKSLEEEYKALQ 385 KE++A K++ +K + L+ + K EQ + QE D K LEE KAL+ Sbjct: 389 KENNAQKEENKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQERDEKELEERRKALE 448 Query: 386 GDR 394 + Sbjct: 449 AGK 451
>HMC6_DESVH (P33393) Protein DVU0531 (HMC operon ORF 6)| Length = 461 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +2 Query: 362 EEEYKALQGDRAGEAQYFQSLEE 430 EE+ KAL GD+ G AQY++ +EE Sbjct: 15 EEDLKALLGDKGG-AQYYKEMEE 36
>SYR_CHLPN (Q9Z7Y3) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 561 Score = 28.5 bits (62), Expect = 8.7 Identities = 17/61 (27%), Positives = 31/61 (50%) Frame = -2 Query: 420 DWKY*ASPALSPCRALYSSSKDFVSISCTAAGKLAVMLLSCSRVCLHSLISKRSRDPFAL 241 DW +P ++P S+ + F C A KLA +L R +++++ ++PF+L Sbjct: 25 DW----APEITP-----STKEHFGHYQCNDAMKLARVLKKAPRAIAEAIVAELPQEPFSL 75 Query: 240 I 238 I Sbjct: 76 I 76
>MD1L1_CRIGR (Q80YF0) Mitotic spindle assembly checkpoint protein MAD1 (Mitotic| arrest deficient-like protein 1) (MAD1-like 1) Length = 717 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/61 (31%), Positives = 32/61 (52%) Frame = +2 Query: 278 ECKQTLEQESNITASFPAAVQEMDTKSLEEEYKALQGDRAGEAQYFQSLEERIIKMKVVP 457 E K Q S+ SFP +E+D L+ E L+G+R+ Q Q+LE ++ ++ + Sbjct: 476 ELKMLRAQTSSAETSFPFCKEEVDALRLKVE--ELEGERSRLEQEKQALEMQMERLTLQG 533 Query: 458 D 460 D Sbjct: 534 D 534
>YEG9_YEAST (P39982) Hypothetical 11.3 kDa protein in SOM1-PCM1 intergenic| region Length = 102 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = -2 Query: 375 LYSSSKDFVSISCTAAGKLAVMLLSCSRVCLH-SLISKRSR 256 ++SS++DF + C A KL+ LL C C SL+ + SR Sbjct: 52 IHSSAEDFRTQRCVCAVKLSASLLGCLLACASWSLLLEVSR 92 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,921,366 Number of Sequences: 219361 Number of extensions: 1067369 Number of successful extensions: 2984 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2901 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2984 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
