ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags20a17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507189.1| PREDICTED Oryza sativa (japonica cultivar-group... 94 5e-16
2dbj|AK069354.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 5e-16
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5gb|AC158750.5| Mus musculus chromosome 15, clone RP24-222C16, co... 44 0.40
6gb|AC114617.16| Mus musculus chromosome 5, clone RP24-84E3, comp... 42 1.6
7gb|AC119214.6| Mus musculus chromosome 8, clone RP24-199K4, comp... 42 1.6
8ref|XM_363616.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 1.6
9gb|L37530.1|MGNXYN33A Magnaporthe grisea endo-beta-1,4-D-xylanas... 42 1.6
10gb|AC158352.5| Mus musculus chromosome 8, clone RP24-325B16, com... 42 1.6
11gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome... 42 1.6
12gb|AC160243.10| Mus musculus chromosome 8, clone RP24-130G22, co... 40 6.2
13gb|AC102483.8| Mus musculus chromosome 1, clone RP24-450F12, com... 40 6.2
14gb|AC096938.8| Rattus norvegicus 16 BAC CH230-49B24 (Children's ... 40 6.2
15gb|AC124998.10| Mus musculus chromosome 10, clone RP24-350B12, c... 40 6.2
16gb|AC140412.2| Mus musculus BAC clone RP24-173O20 from chromosom... 40 6.2
17gb|AC101729.8| Mus musculus chromosome 1, clone RP23-362J21, com... 40 6.2
18gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome... 40 6.2
19gb|AC110166.17| Mus musculus chromosome 16, clone RP23-80O10, co... 40 6.2
20gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, com... 40 6.2
21ref|XM_692521.1| PREDICTED: Danio rerio similar to Neurabin-II (... 40 6.2
22gb|AF335470.1|AF335470 Mus musculus myosin light chain kinase (M... 40 6.2
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
24dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
25emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chr... 40 6.2
26gb|AC154813.2| Mus musculus BAC clone RP24-532J13 from 16, compl... 40 6.2
27emb|AL928941.12| Zebrafish DNA sequence from clone CH211-236L14 ... 40 6.2
28gb|AC122908.4| Mus musculus BAC clone RP23-51D10 from 1, complet... 40 6.2
29gb|AC156500.2| Mus musculus BAC clone RP24-126J12 from chromosom... 40 6.2
30emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chr... 40 6.2 
>ref|XM_507189.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1136_D12.120
            patrial mRNA
          Length = 1756

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                        
Query: 342  agatggatacaaagtccttggaggaggaatacaaggctctacaaggtgatagagctggag 401
            |||||||||  || ||||| ||||||||| |||| |||||||||| ||||| ||||||||
Sbjct: 1376 agatggatatgaaatccttagaggaggaacacaaagctctacaagctgataaagctggag 1435

                                                                       
Query: 402  aagctcagtacttccagtctcttgaagaacggatcattaaaatgaaggtagttcctgat 460
            ||  | ||||||| ||||||||||||||||| || | | ||||||||| |||| |||||
Sbjct: 1436 aaattgagtactttcagtctcttgaagaacgtataaatgaaatgaagggagtttctgat 1494
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>dbj|AK069354.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018H14, full
            insert sequence
          Length = 2338

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                        
Query: 342  agatggatacaaagtccttggaggaggaatacaaggctctacaaggtgatagagctggag 401
            |||||||||  || ||||| ||||||||| |||| |||||||||| ||||| ||||||||
Sbjct: 1958 agatggatatgaaatccttagaggaggaacacaaagctctacaagctgataaagctggag 2017

                                                                       
Query: 402  aagctcagtacttccagtctcttgaagaacggatcattaaaatgaaggtagttcctgat 460
            ||  | ||||||| ||||||||||||||||| || | | ||||||||| |||| |||||
Sbjct: 2018 aaattgagtactttcagtctcttgaagaacgtataaatgaaatgaagggagtttctgat 2076
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                            
Query: 342      agatggatacaaagtccttggaggaggaatacaaggctctacaaggtgatagagctggag 401
                |||||||||  || ||||| ||||||||| |||| |||||||||| ||||| ||||||||
Sbjct: 13942914 agatggatatgaaatccttagaggaggaacacaaagctctacaagctgataaagctggag 13942973

                                                                  
Query: 402      aagctcagtacttccagtctcttgaagaacggatcattaaaatgaaggta 451
                ||  | ||||||| ||||||||||||||||| || | | |||||||||||
Sbjct: 13942974 aaattgagtactttcagtctcttgaagaacgtataaatgaaatgaaggta 13943023
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>dbj|AP005485.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1136_D12
          Length = 105521

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 94/110 (85%)
 Strand = Plus / Plus

                                                                         
Query: 342   agatggatacaaagtccttggaggaggaatacaaggctctacaaggtgatagagctggag 401
             |||||||||  || ||||| ||||||||| |||| |||||||||| ||||| ||||||||
Sbjct: 87309 agatggatatgaaatccttagaggaggaacacaaagctctacaagctgataaagctggag 87368

                                                               
Query: 402   aagctcagtacttccagtctcttgaagaacggatcattaaaatgaaggta 451
             ||  | ||||||| ||||||||||||||||| || | | |||||||||||
Sbjct: 87369 aaattgagtactttcagtctcttgaagaacgtataaatgaaatgaaggta 87418
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>gb|AC158750.5| Mus musculus chromosome 15, clone RP24-222C16, complete sequence
          Length = 128868

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 108   tggttgcaacagaaccatttgttgaa 133
             |||||| |||||||||||||||||||
Sbjct: 53020 tggttgaaacagaaccatttgttgaa 52995
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>gb|AC114617.16| Mus musculus chromosome 5, clone RP24-84E3, complete sequence
          Length = 200977

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 117    cagaaccatttgttgaagcat 137
              |||||||||||||||||||||
Sbjct: 104624 cagaaccatttgttgaagcat 104644
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>gb|AC119214.6| Mus musculus chromosome 8, clone RP24-199K4, complete sequence
          Length = 156548

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   gctagcttccctgctgcagta 337
             |||||||||||||||||||||
Sbjct: 26699 gctagcttccctgctgcagta 26679
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>ref|XM_363616.1| Magnaporthe grisea 70-15 hypothetical protein (MG01542.4) partial
           mRNA
          Length = 996

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 57  gtgtcaaactacaagagcatcaggg 81
           ||||||||| |||||||||||||||
Sbjct: 304 gtgtcaaacaacaagagcatcaggg 328
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>gb|L37530.1|MGNXYN33A Magnaporthe grisea endo-beta-1,4-D-xylanase (Xyl2) gene, complete
           cds
          Length = 1853

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 57  gtgtcaaactacaagagcatcaggg 81
           ||||||||| |||||||||||||||
Sbjct: 624 gtgtcaaacaacaagagcatcaggg 648
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>gb|AC158352.5| Mus musculus chromosome 8, clone RP24-325B16, complete sequence
          Length = 166845

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 317    gctagcttccctgctgcagta 337
              |||||||||||||||||||||
Sbjct: 119082 gctagcttccctgctgcagta 119062
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>gb|AC121769.4| Mus musculus BAC clone RP23-340N4 from chromosome 5, complete sequence
          Length = 186413

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   gtacttccagtctcttgaaga 429
             |||||||||||||||||||||
Sbjct: 60360 gtacttccagtctcttgaaga 60380
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>gb|AC160243.10| Mus musculus chromosome 8, clone RP24-130G22, complete sequence
          Length = 154337

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    gttgcaacagaaccatttgttgaa 133
              |||||||||| |||||||||||||
Sbjct: 144026 gttgcaacagcaccatttgttgaa 144049
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>gb|AC102483.8| Mus musculus chromosome 1, clone RP24-450F12, complete sequence
          Length = 167656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aacagaaccatttgttgaag 134
             ||||||||||||||||||||
Sbjct: 14139 aacagaaccatttgttgaag 14158
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>gb|AC096938.8| Rattus norvegicus 16 BAC CH230-49B24 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 220401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 356    tccttggaggaggaatacaa 375
              ||||||||||||||||||||
Sbjct: 178915 tccttggaggaggaatacaa 178896
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>gb|AC124998.10| Mus musculus chromosome 10, clone RP24-350B12, complete sequence
          Length = 185801

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 288    agacccttgagcaggagagc 307
              ||||||||||||||||||||
Sbjct: 110137 agacccttgagcaggagagc 110156
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>gb|AC140412.2| Mus musculus BAC clone RP24-173O20 from chromosome 14, complete sequence
          Length = 152809

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    gttgcaacagaaccatttgttgaa 133
              |||||| |||||||||||||||||
Sbjct: 103875 gttgcaccagaaccatttgttgaa 103852
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>gb|AC101729.8| Mus musculus chromosome 1, clone RP23-362J21, complete sequence
          Length = 177946

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ataagaataagttggttgca 115
              ||||||||||||||||||||
Sbjct: 135104 ataagaataagttggttgca 135085
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>gb|AC122452.4| Mus musculus BAC clone RP24-255M5 from chromosome 16, complete sequence
          Length = 181463

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 314    actgctagcttccctgctgc 333
              ||||||||||||||||||||
Sbjct: 162876 actgctagcttccctgctgc 162895
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>gb|AC110166.17| Mus musculus chromosome 16, clone RP23-80O10, complete sequence
          Length = 131042

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   actgctagcttccctgctgc 333
             ||||||||||||||||||||
Sbjct: 95956 actgctagcttccctgctgc 95975
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>gb|AC156991.9| Mus musculus chromosome 8, clone RP23-297F23, complete sequence
          Length = 164343

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 110    gttgcaacagaaccatttgttgaa 133
              |||||||||| |||||||||||||
Sbjct: 158991 gttgcaacagcaccatttgttgaa 158968
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>ref|XM_692521.1| PREDICTED: Danio rerio similar to Neurabin-II (Neural tissue-specific
            F-actin binding protein II) (Protein phosphatase 1
            regulatory subunit 9B) (Spinophilin) (p130) (PP1bp134)
            (LOC569155), mRNA
          Length = 1848

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 285  agcagacccttgagcaggag 304
            ||||||||||||||||||||
Sbjct: 1559 agcagacccttgagcaggag 1578
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>gb|AF335470.1|AF335470 Mus musculus myosin light chain kinase (Mylk) gene, partial cds
          Length = 180102

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 314    actgctagcttccctgctgc 333
              ||||||||||||||||||||
Sbjct: 131783 actgctagcttccctgctgc 131764
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     cttgagcaggagagcaacat 312
               ||||||||||||||||||||
Sbjct: 2152071 cttgagcaggagagcaacat 2152090
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>dbj|AP002913.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0480E02
          Length = 141862

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   cttgagcaggagagcaacat 312
             ||||||||||||||||||||
Sbjct: 73183 cttgagcaggagagcaacat 73202
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>emb|BX005215.13| Mouse DNA sequence from clone RP23-280F9 on chromosome X, complete
              sequence
          Length = 189900

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 110    gttgcaacagaaccatttgttgaa 133
              |||| |||||||||||||||||||
Sbjct: 153621 gttgaaacagaaccatttgttgaa 153644
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>gb|AC154813.2| Mus musculus BAC clone RP24-532J13 from 16, complete sequence
          Length = 175991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  actgctagcttccctgctgc 333
            ||||||||||||||||||||
Sbjct: 4377 actgctagcttccctgctgc 4396
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>emb|AL928941.12| Zebrafish DNA sequence from clone CH211-236L14 in linkage group 25,
             complete sequence
          Length = 146652

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 152   aacttttttggagggaagag 171
             ||||||||||||||||||||
Sbjct: 16198 aacttttttggagggaagag 16217
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>gb|AC122908.4| Mus musculus BAC clone RP23-51D10 from 1, complete sequence
          Length = 208926

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  aacagaaccatttgttgaag 134
            ||||||||||||||||||||
Sbjct: 1658 aacagaaccatttgttgaag 1639
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>gb|AC156500.2| Mus musculus BAC clone RP24-126J12 from chromosome 9, complete sequence
          Length = 152842

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    aggtgatagagctggagaag 404
              ||||||||||||||||||||
Sbjct: 103843 aggtgatagagctggagaag 103824
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>emb|AL845292.4| Mouse DNA sequence from clone RP23-386I21 on chromosome 2, complete
             sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    aagaataagttggttgcaacagaa 121
             |||||||||||||||||| |||||
Sbjct: 68746 aagaataagttggttgcatcagaa 68769


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,202,292
Number of Sequences: 3902068
Number of extensions: 4202292
Number of successful extensions: 85075
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84983
Number of HSP's gapped (non-prelim): 92
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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