Clone Information

BLAST Search Result

Clone Name	bags19p23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_471170.1\| Oryza sativa (japonica cultivar-group), predic...	143	6e-31
2	dbj\|AK064088.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	143	6e-31
3	emb\|Z83832.1\|ASSGT Avena sativa mRNA for UDP-glucose:sterol gluc...	135	1e-28
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	2e-15
5	emb\|AL662985.3\|OSJN00189 Oryza sativa genomic DNA, chromosome 4,...	92	2e-15
6	emb\|AL663011.2\|OSJN00215 Oryza sativa genomic DNA, chromosome 4,...	92	2e-15
7	ref\|XM_477701.1\| Oryza sativa (japonica cultivar-group), mRNA	54	4e-04
8	gb\|AC113113.18\| Mus musculus chromosome 16, clone RP23-334P10, c...	44	0.38
9	dbj\|AB071961.1\| Panax ginseng PGGT-1 mRNA for UDP-glucose:sterol...	44	0.38
10	dbj\|AK012834.1\| Mus musculus 10, 11 days embryo whole body cDNA,...	44	0.38
11	gb\|AC007956.5\|AC007956 Homo sapiens chromosome 14 clones CTD-321...	44	0.38
12	emb\|CR396582.13\| Zebrafish DNA sequence from clone DKEY-283B1 in...	42	1.5
13	emb\|X56793.1\|SERFBB S.enterica (group B) rfb gene cluster	42	1.5
14	gb\|AE008792.1\| Salmonella typhimurium LT2, section 96 of 220 of ...	42	1.5
15	emb\|CR352393.1\| Gallus gallus finished cDNA, clone ChEST78p3	42	1.5
16	gb\|AC068274.5\| Homo sapiens BAC clone RP11-119B15 from 2, comple...	42	1.5
17	gb\|U35435.1\|SEU35435 Salmonella enterica galactosyl-1-phosphate ...	42	1.5
18	gb\|U35434.1\|SEU35434 Salmonella enterica galactosyl-1-phosphate ...	42	1.5
19	gb\|AC145956.4\| Gallus gallus BAC clone CH261-14N1 from chromosom...	42	1.5
20	gb\|AC099637.7\| Mus musculus chromosome 1, clone RP24-257C20, com...	40	5.9
21	gb\|AC103612.5\| Mus musculus chromosome 5, clone RP24-455E13, com...	40	5.9
22	gb\|AC124473.2\| Mus musculus BAC clone RP24-86K23 from chromosome...	40	5.9
23	emb\|CR955006.2\| Medicago truncatula chromosome 5 clone mth2-5i4,...	40	5.9
24	gb\|AC115294.5\| Mus musculus BAC clone RP23-97A19 from chromosome...	40	5.9
25	emb\|AL513166.7\| Human DNA sequence from clone RP11-261J10 on chr...	40	5.9
26	emb\|AL392107.17\| Human DNA sequence from clone RP11-114F7 on chr...	40	5.9
27	emb\|AL732462.20\| Mouse DNA sequence from clone RP23-132J5 on chr...	40	5.9
28	emb\|AL929016.5\| Zebrafish DNA sequence from clone DKEY-24J9 in l...	40	5.9
29	gb\|AC151818.2\| Xenopus tropicalis clone ISB1-133E21, complete se...	40	5.9
30	emb\|BX901964.13\| Zebrafish DNA sequence from clone DKEYP-20A7 in...	40	5.9
31	gb\|AF130164.1\|AF130164 Ligustrum vulgare NADH dehydrogenase subu...	40	5.9
32	gb\|AF130161.1\|AF130161 Nyctanthes arbor-tristis NADH dehydrogena...	40	5.9
33	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
34	gb\|AC068121.8\| Homo sapiens BAC clone RP11-181P21 from 2, comple...	40	5.9
35	gb\|AC079112.4\| Homo sapiens BAC clone RP11-67K11 from 2, complet...	40	5.9
36	dbj\|AP003745.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
37	dbj\|AP004264.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
38	emb\|BX255931.5\| Zebrafish DNA sequence from clone CH211-195B2 in...	40	5.9
39	gb\|AC007103.4\|AC007103 Homo sapiens chromosome 4 clone C0190D22 ...	40	5.9
40	gb\|AC005209.1\|AC005209 Homo sapiens chromosome 17, clone hRPK.62...	40	5.9
41	emb\|AL929135.9\| Zebrafish DNA sequence from clone CH211-125A22, ...	40	5.9
42	gb\|AF027272.1\|AF027272 Tetrachondra patagonica NADH dehydrogenas...	40	5.9
43	emb\|CT571263.1\| Medicago truncatula chromosome 5 clone mte1-7c20...	40	5.9
44	emb\|BX072536.4\| Mouse DNA sequence from clone RP23-5A21 on chrom...	40	5.9
45	emb\|AJ011986.1\|PPR011986 Polypremum procumbens chloroplast ndhF ...	40	5.9

>ref|XM_471170.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1830

 Score =  143 bits (72), Expect = 6e-31
 Identities = 174/208 (83%)
 Strand = Plus / Plus

                                                                       
Query: 234 tcaagcactatgccgggggtgataaaggatactgagataactactgaaactacgggtcca 293
           |||||||||||||| || | ||| ||  ||  ||| ||||| | ||||||| | ||||||
Sbjct: 157 tcaagcactatgccaggtgggattaataatgttgaaataaccaatgaaactgctggtcca 216

                                                                       
Query: 294 tcaaatctggaaaggtcaaaaactgagaggcgcaaacaaagtaacccagctgatgatcct 353
           || ||||||||||| |||| ||| ||||||||   |||||  || |||||||||||||||
Sbjct: 217 tctaatctggaaagatcaagaacagagaggcgtcgacaaaacaatccagctgatgatcct 276

                                                                       
Query: 354 gctaaacagttattggatgataagatttccataaggaaaaagctcaaaatgttaaatcga 413
            ||||||||||||| |||||||| |||||| |||  || |||||| ||||| ||||||| 
Sbjct: 277 actaaacagttatttgatgataaaatttccctaaaaaagaagctcgaaatgctaaatcgg 336

                                       
Query: 414 atagctacagtgaaggatgatggaactg 441
           |||||||||||||| |||||||||||||
Sbjct: 337 atagctacagtgaaagatgatggaactg 364

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>dbj|AK064088.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-C05, full
           insert sequence
          Length = 2363

 Score =  143 bits (72), Expect = 6e-31
 Identities = 174/208 (83%)
 Strand = Plus / Plus

                                                                       
Query: 234 tcaagcactatgccgggggtgataaaggatactgagataactactgaaactacgggtcca 293
           |||||||||||||| || | ||| ||  ||  ||| ||||| | ||||||| | ||||||
Sbjct: 302 tcaagcactatgccaggtgggattaataatgttgaaataaccaatgaaactgctggtcca 361

                                                                       
Query: 294 tcaaatctggaaaggtcaaaaactgagaggcgcaaacaaagtaacccagctgatgatcct 353
           || ||||||||||| |||| ||| ||||||||   |||||  || |||||||||||||||
Sbjct: 362 tctaatctggaaagatcaagaacagagaggcgtcgacaaaacaatccagctgatgatcct 421

                                                                       
Query: 354 gctaaacagttattggatgataagatttccataaggaaaaagctcaaaatgttaaatcga 413
            ||||||||||||| |||||||| |||||| |||  || |||||| ||||| ||||||| 
Sbjct: 422 actaaacagttatttgatgataaaatttccctaaaaaagaagctcgaaatgctaaatcgg 481

                                       
Query: 414 atagctacagtgaaggatgatggaactg 441
           |||||||||||||| |||||||||||||
Sbjct: 482 atagctacagtgaaagatgatggaactg 509

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>emb|Z83832.1|ASSGT Avena sativa mRNA for UDP-glucose:sterol glucosyltransferase
          Length = 2317

 Score =  135 bits (68), Expect = 1e-28
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                       
Query: 346 atgatcctgctaaacagttattggatgataagatttccataaggaaaaagctcaaaatgt 405
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct: 407 atgatcctgctaaacagttattggatgataagatttccgtaaggaaaaagctcaaaatgc 466

                                               
Query: 406 taaatcgaatagctacagtgaaggatgatggaactg 441
           |||| || || ||||||||||  |||||||||||||
Sbjct: 467 taaaccgcattgctacagtgagagatgatggaactg 502



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 210 gcagataacggaaacctccataggtcaagcactatgccgggggtgataaaggatactgag 269
           ||||| ||||| ||||||||||| |||||||||||||| || ||||| |||||| |||| 
Sbjct: 280 gcagacaacgggaacctccatagatcaagcactatgccaggagtgatcaaggatgctgaa 339

                                                                
Query: 270 ataactactgaaactacgggtccatcaaatctggaaaggtcaaaaactgagag 322
           |||| |||||||||||| || || || ||| | |||||||| ||||| |||||
Sbjct: 340 ataattactgaaactacaggaccgtcgaattttgaaaggtcgaaaaccgagag 392

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                           
Query: 234     tcaagcactatgccgggggtgataaaggatactgagataactactgaaactacgggtcca 293
               |||||||||||||| || | ||| ||  ||  ||| ||||| | ||||||| | ||||||
Sbjct: 1983944 tcaagcactatgccaggtgggattaataatgttgaaataaccaatgaaactgctggtcca 1983885

                                                                           
Query: 294     tcaaatctggaaaggtcaaaaactgagaggcgcaaacaaagtaacccagctgatgatcct 353
               || ||||||||||| |||| ||| ||||||||   |||||  || |||||||||||||||
Sbjct: 1983884 tctaatctggaaagatcaagaacagagaggcgtcgacaaaacaatccagctgatgatcct 1983825

                                             
Query: 354     gctaaacagttattggatgataagatttcc 383
                ||||||||||||| |||||||| ||||||
Sbjct: 1983824 actaaacagttatttgatgataaaatttcc 1983795



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                               
Query: 394     agctcaaaatgttaaatcgaatagctacagtgaaggatgatggaactg 441
               ||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 1983023 agctcgaaatgctaaatcggatagctacagtgaaagatgatggaactg 1982976

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>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06,
           complete sequence
          Length = 126447

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                       
Query: 234 tcaagcactatgccgggggtgataaaggatactgagataactactgaaactacgggtcca 293
           |||||||||||||| || | ||| ||  ||  ||| ||||| | ||||||| | ||||||
Sbjct: 604 tcaagcactatgccaggtgggattaataatgttgaaataaccaatgaaactgctggtcca 545

                                                                       
Query: 294 tcaaatctggaaaggtcaaaaactgagaggcgcaaacaaagtaacccagctgatgatcct 353
           || ||||||||||| |||| ||| ||||||||   |||||  || |||||||||||||||
Sbjct: 544 tctaatctggaaagatcaagaacagagaggcgtcgacaaaacaatccagctgatgatcct 485

                                         
Query: 354 gctaaacagttattggatgataagatttcc 383
            ||||||||||||| |||||||| ||||||
Sbjct: 484 actaaacagttatttgatgataaaatttcc 455

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>emb|AL663011.2|OSJN00215 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0080H08,
              complete sequence
          Length = 138127

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                          
Query: 234    tcaagcactatgccgggggtgataaaggatactgagataactactgaaactacgggtcca 293
              |||||||||||||| || | ||| ||  ||  ||| ||||| | ||||||| | ||||||
Sbjct: 127181 tcaagcactatgccaggtgggattaataatgttgaaataaccaatgaaactgctggtcca 127122

                                                                          
Query: 294    tcaaatctggaaaggtcaaaaactgagaggcgcaaacaaagtaacccagctgatgatcct 353
              || ||||||||||| |||| ||| ||||||||   |||||  || |||||||||||||||
Sbjct: 127121 tctaatctggaaagatcaagaacagagaggcgtcgacaaaacaatccagctgatgatcct 127062

                                            
Query: 354    gctaaacagttattggatgataagatttcc 383
               ||||||||||||| |||||||| ||||||
Sbjct: 127061 actaaacagttatttgatgataaaatttcc 127032



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                              
Query: 394    agctcaaaatgttaaatcgaatagctacagtgaaggatgatggaactg 441
              ||||| ||||| ||||||| |||||||||||||| |||||||||||||
Sbjct: 126260 agctcgaaatgctaaatcggatagctacagtgaaagatgatggaactg 126213

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>ref|XM_477701.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1854

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 375 aagatttccataaggaaaaagctcaaaatgttaaatcgaatagctacagtgaaggatgat 434
           |||||||||||||  || ||||||| | |||||| |||||| |||| | |||| ||||||
Sbjct: 295 aagatttccataaaaaagaagctcagattgttaagtcgaatggctatactgaaagatgat 354

                  
Query: 435 ggaactg 441
           |||||||
Sbjct: 355 ggaactg 361

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>gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, complete sequence
          Length = 216380

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 77     aagaaaattgttcagttgtttt 98
              ||||||||||||||||||||||
Sbjct: 159032 aagaaaattgttcagttgtttt 159011

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>dbj|AB071961.1| Panax ginseng PGGT-1 mRNA for UDP-glucose:sterol
           3-O-glucosyltransferase, comolete cds
          Length = 2223

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 412 gaatagctacagtgaaggatgatggaactg 441
           |||||||||| ||||| |||||||||||||
Sbjct: 560 gaatagctactgtgaaagatgatggaactg 589

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>dbj|AK012834.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810028C22 product:poliovirus
           receptor-related 3, full insert sequence
          Length = 1184

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 77  aagaaaattgttcagttgtttt 98
           ||||||||||||||||||||||
Sbjct: 732 aagaaaattgttcagttgtttt 753

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>gb|AC007956.5|AC007956 Homo sapiens chromosome 14 clones CTD-3211F8 and RP11-173A8 containing
             KIAA0317 gene, complete cds; and unknown gene, complete
             sequence
          Length = 233738

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 170   atcatttccttttaattcaaca 191
             ||||||||||||||||||||||
Sbjct: 55079 atcatttccttttaattcaaca 55100

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>emb|CR396582.13| Zebrafish DNA sequence from clone DKEY-283B1 in linkage group 3, complete
              sequence
          Length = 154857

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 159    gtataaatgttatcatttcctttta 183
              |||||||||| ||||||||||||||
Sbjct: 152788 gtataaatgtcatcatttcctttta 152812

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>emb|X56793.1|SERFBB S.enterica (group B) rfb gene cluster
          Length = 22080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 251   ggtgataaaggatactgagat 271
             |||||||||||||||||||||
Sbjct: 20892 ggtgataaaggatactgagat 20912

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>gb|AE008792.1| Salmonella typhimurium LT2, section 96 of 220 of the complete genome
          Length = 22043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 251  ggtgataaaggatactgagat 271
            |||||||||||||||||||||
Sbjct: 5025 ggtgataaaggatactgagat 5005

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>emb|CR352393.1| Gallus gallus finished cDNA, clone ChEST78p3
          Length = 1497

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 379 tttccataaggaaaaagctca 399
           |||||||||||||||||||||
Sbjct: 790 tttccataaggaaaaagctca 810

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>gb|AC068274.5| Homo sapiens BAC clone RP11-119B15 from 2, complete sequence
          Length = 118955

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   tcttctatttatcttgtgata 144
             |||||||||||||||||||||
Sbjct: 12812 tcttctatttatcttgtgata 12832

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>gb|U35435.1|SEU35435 Salmonella enterica galactosyl-1-phosphate transferase
           (rfbP4452(T-)) gene, complete cds
          Length = 1682

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ggtgataaaggatactgagat 271
           |||||||||||||||||||||
Sbjct: 827 ggtgataaaggatactgagat 847

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>gb|U35434.1|SEU35434 Salmonella enterica galactosyl-1-phosphate transferase
           (rfbP4451(T-)) gene, complete cds
          Length = 1681

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 251 ggtgataaaggatactgagat 271
           |||||||||||||||||||||
Sbjct: 826 ggtgataaaggatactgagat 846

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>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
              sequence
          Length = 243969

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 163    aaatgttatcatttcctttta 183
              |||||||||||||||||||||
Sbjct: 211847 aaatgttatcatttcctttta 211827

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>gb|AC099637.7| Mus musculus chromosome 1, clone RP24-257C20, complete sequence
          Length = 169573

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 157    aagtataaatgttatcattt 176
              ||||||||||||||||||||
Sbjct: 114445 aagtataaatgttatcattt 114464

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>gb|AC103612.5| Mus musculus chromosome 5, clone RP24-455E13, complete sequence
          Length = 152420

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 122   tttcttctatttatcttgtg 141
             ||||||||||||||||||||
Sbjct: 92194 tttcttctatttatcttgtg 92175

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>gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome 3, complete sequence
          Length = 185436

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   tgataagatttccataagga 390
             ||||||||||||||||||||
Sbjct: 69261 tgataagatttccataagga 69280

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>emb|CR955006.2| Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE
          Length = 108871

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 406    taaatcgaatagctacagtgaaggatga 433
              ||||||||||||||| |||| |||||||
Sbjct: 108521 taaatcgaatagctaaagtggaggatga 108494

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>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence
          Length = 149451

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 371    tgataagatttccataagga 390
              ||||||||||||||||||||
Sbjct: 135580 tgataagatttccataagga 135599

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>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete
             sequence
          Length = 170817

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   gttatcatttccttttaatt 186
             ||||||||||||||||||||
Sbjct: 41312 gttatcatttccttttaatt 41331

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>emb|AL392107.17| Human DNA sequence from clone RP11-114F7 on chromosome 10 Contains the
             3' end of the ABCC2 gene for ATP-binding cassette
             sub-family C (CFTR/MRP) member 2, gene KIAA1010 and two
             CpG islands, complete sequence
          Length = 95018

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   ctggaaaggtcaaaaactga 319
             ||||||||||||||||||||
Sbjct: 58166 ctggaaaggtcaaaaactga 58147

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>emb|AL732462.20| Mouse DNA sequence from clone RP23-132J5 on chromosome 1, complete
             sequence
          Length = 91356

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aagtataaatgttatcattt 176
             ||||||||||||||||||||
Sbjct: 80626 aagtataaatgttatcattt 80645

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>emb|AL929016.5| Zebrafish DNA sequence from clone DKEY-24J9 in linkage group 4 Contains
              the gene for a novel protein (zgc:63880), the 3' end of the
              gene for a novel protein similar to vertebrate KCND2, the
              5' end of the ing3 gene for inhibitor of growth family
              member 3 and a CpG island, complete sequence
          Length = 200582

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 390    aaaaagctcaaaatgttaaa 409
              ||||||||||||||||||||
Sbjct: 195387 aaaaagctcaaaatgttaaa 195406

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>gb|AC151818.2| Xenopus tropicalis clone ISB1-133E21, complete sequence
          Length = 96546

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 348   gatcctgctaaacagttatt 367
             ||||||||||||||||||||
Sbjct: 59272 gatcctgctaaacagttatt 59253

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>emb|BX901964.13| Zebrafish DNA sequence from clone DKEYP-20A7 in linkage group 24,
             complete sequence
          Length = 82377

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   cagtttcttctatttatctt 138
             ||||||||||||||||||||
Sbjct: 20959 cagtttcttctatttatctt 20978

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>gb|AF130164.1|AF130164 Ligustrum vulgare NADH dehydrogenase subunit F (ndhF) gene, complete
            cds; chloroplast gene for chloroplast product
          Length = 2217

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tttcttctatttatcttgtg 141
            ||||||||||||||||||||
Sbjct: 2157 tttcttctatttatcttgtg 2176

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>gb|AF130161.1|AF130161 Nyctanthes arbor-tristis NADH dehydrogenase subunit F (ndhF) gene,
            complete cds; chloroplast gene for chloroplast product
          Length = 2223

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tttcttctatttatcttgtg 141
            ||||||||||||||||||||
Sbjct: 2157 tttcttctatttatcttgtg 2176

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 394      agctcaaaatgttaaatcgaatagctacagtgaaggatgatggaactg 441
                |||||| | |||||| |||||| |||| | |||| |||||||||||||
Sbjct: 13348629 agctcagattgttaagtcgaatggctatactgaaagatgatggaactg 13348676

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>gb|AC068121.8| Homo sapiens BAC clone RP11-181P21 from 2, complete sequence
          Length = 170846

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   cataaggaaaaagctcaaaa 402
             ||||||||||||||||||||
Sbjct: 40166 cataaggaaaaagctcaaaa 40147

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>gb|AC079112.4| Homo sapiens BAC clone RP11-67K11 from 2, complete sequence
          Length = 155888

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    atgtgacttggaaagtataa 164
              ||||||||||||||||||||
Sbjct: 106886 atgtgacttggaaagtataa 106867

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>dbj|AP003745.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1123_B01
          Length = 105736

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 394   agctcaaaatgttaaatcgaatagctacagtgaaggatgatggaactg 441
             |||||| | |||||| |||||| |||| | |||| |||||||||||||
Sbjct: 63067 agctcagattgttaagtcgaatggctatactgaaagatgatggaactg 63114

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>dbj|AP004264.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0025D09
          Length = 142593

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                              
Query: 394    agctcaaaatgttaaatcgaatagctacagtgaaggatgatggaactg 441
              |||||| | |||||| |||||| |||| | |||| |||||||||||||
Sbjct: 136492 agctcagattgttaagtcgaatggctatactgaaagatgatggaactg 136539

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>emb|BX255931.5| Zebrafish DNA sequence from clone CH211-195B2 in linkage group 22,
             complete sequence
          Length = 189327

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tttaattcaacattcaagtc 199
             ||||||||||||||||||||
Sbjct: 44993 tttaattcaacattcaagtc 45012

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>gb|AC007103.4|AC007103 Homo sapiens chromosome 4 clone C0190D22 map 4p16, complete sequence
          Length = 181571

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 159    gtataaatgttatcatttcctttt 182
              ||||||||||| ||||||||||||
Sbjct: 101634 gtataaatgttttcatttcctttt 101657

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>gb|AC005209.1|AC005209 Homo sapiens chromosome 17, clone hRPK.628_O_18, complete sequence
          Length = 184130

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 422   agtgaaggatgatggaactg 441
             ||||||||||||||||||||
Sbjct: 31746 agtgaaggatgatggaactg 31727

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>emb|AL929135.9| Zebrafish DNA sequence from clone CH211-125A22, complete sequence
          Length = 167531

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   tttaattcaacattcaagtc 199
             ||||||||||||||||||||
Sbjct: 98930 tttaattcaacattcaagtc 98911

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>gb|AF027272.1|AF027272 Tetrachondra patagonica NADH dehydrogenase (ndhF) gene, chloroplast
            gene encoding chloroplast protein, partial cds
          Length = 2214

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tttcttctatttatcttgtg 141
            ||||||||||||||||||||
Sbjct: 2178 tttcttctatttatcttgtg 2197

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>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE
          Length = 127003

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 406    taaatcgaatagctacagtgaaggatga 433
              ||||||||||||||| |||| |||||||
Sbjct: 116825 taaatcgaatagctaaagtggaggatga 116852

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>emb|BX072536.4| Mouse DNA sequence from clone RP23-5A21 on chromosome X, complete
             sequence
          Length = 246587

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 165   atgttatcatttccttttaattcaacat 192
             |||||||||||||  |||||||||||||
Sbjct: 87914 atgttatcatttctatttaattcaacat 87887

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>emb|AJ011986.1|PPR011986 Polypremum procumbens chloroplast ndhF gene, partial
          Length = 2211

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 122  tttcttctatttatcttgtg 141
            ||||||||||||||||||||
Sbjct: 2175 tttcttctatttatcttgtg 2194


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,439,665
Number of Sequences: 3902068
Number of extensions: 4439665
Number of successful extensions: 88877
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88765
Number of HSP's gapped (non-prelim): 112
length of query: 441
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 419
effective length of database: 17,147,199,772
effective search space: 7184676704468
effective search space used: 7184676704468
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result