ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19p08 |
|---|---|
| Clone Library Name | barley_pub |
>YRT2_CAEEL (Q10045) Hypothetical protein T07A5.2| Length = 301 Score = 111 bits (277), Expect = 1e-24 Identities = 57/134 (42%), Positives = 85/134 (63%) Frame = +3 Query: 126 YLRRIVKWQQMDIEYTFWQMVHLCTSPKVVYQHTKYHKQTKNQWARDDPAFIVILILFLV 305 + RR+V +QMD E+ WQM++L P VY++ Y K+TK+Q+ARDDPAF+V+L L L+ Sbjct: 67 FTRRLVHIRQMDFEFALWQMLYLLIQPSKVYKNFIYRKRTKDQFARDDPAFLVLLALSLL 126 Query: 306 FATSAYCAAFGESAPHAALTIISVVFVHFLFAGLVLATLCWFLTNSYLREEPNSHVVEQR 485 F++ Y A G + VFV + G+V+AT+ W+++N +LR+ V +Q Sbjct: 127 FSSIFYAYALGLEKIGFFTFFLWSVFVDCIGVGVVIATVLWWVSNRFLRK-----VRDQD 181 Query: 486 VEWLYAFDVHCNSF 527 VEW Y FDVH N+F Sbjct: 182 VEWGYCFDVHLNAF 195
>YK10_YEAST (P36125) Hypothetical 32.0 kDa protein in SAP190-SPO14 intergenic| region Length = 273 Score = 94.4 bits (233), Expect = 2e-19 Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 13/146 (8%) Frame = +3 Query: 129 LRRIVKW-QQMDIEYTFWQMVHLCTSPKVVYQHTKYHKQTKNQWARDDPAFIVILILFLV 305 +RR+ K + +D+E W+M HL P+ Y+ Y +QTKNQWARDDP+F + I + Sbjct: 42 IRRLFKTPKNLDLETASWEMFHLIFHPRKAYRSIYYQRQTKNQWARDDPSFFIFQIALIS 101 Query: 306 FAT---SAYCAAFGESAPHAALTIIS--------VVFVHFLFAGLVLATLCWFLTN-SYL 449 ++ S Y + F + AL+II +V + F G ++AT+ + L N S+ Sbjct: 102 LSSIIWSIYNSGFNNDSDMGALSIIGHFFKSLVMMVILDFFIFGFIMATIFYLLLNRSHF 161 Query: 450 REEPNSHVVEQRVEWLYAFDVHCNSF 527 + + + + V VEW Y FDVHCNSF Sbjct: 162 KFKSSQNSV---VEWAYCFDVHCNSF 184
>IFT52_HUMAN (Q9Y366) Intraflagellar transport 52 homolog (Protein NGD5 homolog)| Length = 437 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%) Frame = +3 Query: 375 VVFVHFLFAGLVLATL--CWFLTNSYLREEPNSHVVEQRVEWLYAFDVHCN 521 + F H G LA L C ++ YL +E NS +++ +WL D+H N Sbjct: 198 LAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTGDIHLN 248
>IFT52_MOUSE (Q62559) Intraflagellar transport 52 homolog (Protein NGD5)| Length = 426 Score = 31.6 bits (70), Expect = 1.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = +3 Query: 396 FAGLVLATLCWFLTNSYLREEPNSHVVEQRVEWLYAFDVHCN 521 F L + C ++ YL +E NS +++ +WL D+H N Sbjct: 208 FGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTTGDIHLN 249
>YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C821.13c (EC| 3.6.3.1) Length = 1562 Score = 30.0 bits (66), Expect = 4.1 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 13/91 (14%) Frame = +3 Query: 273 AFIVILILFLVFATSAY----CAAFGESAPHAALTIIS--VVFVHFLFAG------LVLA 416 AF+V + + +F A+G+ AA+ I++ +VF+ + LVL Sbjct: 1394 AFLVFYVTYSLFGMKELNDNNIFAYGQLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLT 1453 Query: 417 TLCWFLTNSYLREE-PNSHVVEQRVEWLYAF 506 +L WFL N ++ E P+ ++ R ++L+ F Sbjct: 1454 SLAWFLFNIFISEHYPDKNLYLARSQFLHHF 1484
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 30.0 bits (66), Expect = 4.1 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%) Frame = +3 Query: 3 SGSGSRXAEE---QQKEGEGRTMLPTTASKGRGAARSAPPLFGPYLRRIVKWQQMDIEYT 173 +G G+ A+E + G +LP T G GA PYLRR+V+W + + T Sbjct: 153 AGRGADAAQEFIDRVARGPRLPLLPNTPGHGPGA---------PYLRRVVEWVEGALVGT 203 Query: 174 F 176 F Sbjct: 204 F 204
>NFASC_RAT (P97685) Neurofascin precursor| Length = 1240 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +3 Query: 102 SAPPLFGPYLRRIVKWQQMDIEYTFWQMVHLCTSPKVVYQHTKY 233 +A FGP LR IVKW++ + T W V + S VV Q Y Sbjct: 752 NATSAFGPNLRYIVKWRRRETRET-WNNVTVWGSRYVVGQTPVY 794
>NFASC_MOUSE (Q810U3) Neurofascin precursor| Length = 1240 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/44 (40%), Positives = 23/44 (52%) Frame = +3 Query: 102 SAPPLFGPYLRRIVKWQQMDIEYTFWQMVHLCTSPKVVYQHTKY 233 +A FGP LR IVKW++ + T W V + S VV Q Y Sbjct: 752 NATSAFGPNLRYIVKWRRRETRET-WNNVTVWGSRYVVGQTPVY 794
>MTCD_TETTH (Q8WSW3) Cadmium metallothionein precursor (MT-Cd) (Cd-MT)| Length = 162 Score = 28.9 bits (63), Expect = 9.1 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = +2 Query: 257 GSG*SCIYCHSNSFPCVCDISLLCSVWRECAPCCFNNHLGCVC 385 G G C+ C C + C V PCCF+ + GC C Sbjct: 46 GEGCKCVNCKC----CKPQANCCCGV--NAKPCCFDPNSGCCC 82
>MURG_BRAJA (Q89FU7) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase) Length = 366 Score = 28.9 bits (63), Expect = 9.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +2 Query: 59 DAAHDGVQGPGGRPLRPAALRSVSPPYCQVAANGYRIHVLANGS 190 D A G G P+RPA L + + PY ANG ++ GS Sbjct: 153 DPALSGKTTTVGTPMRPAVLAAAAVPYAAPEANGPLRLLVVGGS 196
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.9 bits (63), Expect = 9.1 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 3 SGSGSRXAEE---QQKEGEGRTMLPTTASKGRGAARSAPPLFGPYLRRIVKW 149 +G G+ A+E + G +LP T G GA PYLRR+V+W Sbjct: 153 AGRGADAAQEFIDRVARGPRLPLLPNTPEHGPGA---------PYLRRVVEW 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,046,929 Number of Sequences: 219361 Number of extensions: 1636511 Number of successful extensions: 4765 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4759 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4027872870 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
