>FOLC_HUMAN (Q05932) Folylpolyglutamate synthase, mitochondrial precursor (EC|
           6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS)
           (Tetrahydrofolate synthase)
           (Tetrahydrofolylpolyglutamate synthase)
          Length = 587

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 27/86 (31%), Positives = 34/86 (39%)
 Frame = -2

Query: 423 AVLLQQ*TVHQSSGIANQNEYAL*CIQQSHSLRCLLHQTQSKQEWFHIRMMKGDPQLPQV 244
           AV     T   S+G A+Q  + +   Q    LRCL HQ    Q W H+   +  P L   
Sbjct: 436 AVFCPNLTEVSSTGNADQQNFTVTLDQVL--LRCLEHQ----QHWNHLDEEQASPDLWSA 489

Query: 243 SEDEAIVPGALLLYPEPSFLSQPPSL 166
              E     +LLL P P       SL
Sbjct: 490 PSPEPGGSASLLLAPHPPHTCSASSL 515

>TRME_XYLFT (Q879S5) tRNA modification GTPase trmE|
          Length = 451

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = -2

Query: 264 DPQLPQVSEDEAI--VPGALLLYPEPSFLSQPPSLWDSDFLPL 142
           DPQ+  ++  +A+  VP  L ++ +   L++PPS+ D+D +P+
Sbjct: 311 DPQIGSLALADALTSVPRVLWIHNKLDLLTEPPSVLDTDVIPV 353

>RTKN_RAT (Q6V7V2) Rhotekin|
          Length = 548

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 170 LSGTQTFCLWTSTDSDSGR 114
           L GT  FC W S D+DSG+
Sbjct: 321 LKGTNLFCYWRSEDADSGQ 339

>HEM3_PICTO (Q6L2G8) Probable porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 282

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = +3

Query: 420 LLKTAITLA--SSRDDVSTIRDALEVSAEMYRKDPNNV 527
           +LK  I +A  S++D  S I D+LE+SA + R DP +V
Sbjct: 65  ILKNEIDIAVHSAKDIPSFIDDSLEISAVLKRDDPRDV 102

>VPG_BLRV (P19127) Putative genome-linked protein precursor (VPG) (16 kDa|
           protein) (ORF 2)
          Length = 142

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 346 STKPLPP--MPSASDSIKARMVPYSNDERGSSVAPSLRRRS 230
           S +PLPP  +PS  +SI       S+ +  +S +P+LRR+S
Sbjct: 61  SPRPLPPPQVPSLMNSILTSRTQQSSPKLTNSASPNLRRKS 101

>TRME_XYLFA (Q9P9U3) Probable tRNA modification GTPase trmE|
          Length = 451

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -2

Query: 264 DPQLPQVSEDEAI--VPGALLLYPEPSFLSQPPSLWDSDFLPL 142
           DPQ+  ++  +A+  VP  L ++ +   L++PPS  D+D +P+
Sbjct: 311 DPQIGSLALADALTSVPRVLWIHNKLDLLTEPPSALDTDVIPV 353

>EGLN2_MOUSE (Q91YE2) Egl nine homolog 2 (EC 1.14.11.-) (Hypoxia-inducible|
           factor prolyl hydroxylase 1) (HIF-prolyl hydroxylase 1)
           (HIF-PH1) (Falkor)
          Length = 419

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +3

Query: 36  ARTEEQEEKRKSILALVGGASKQVPSSPAVRISGGPKAESLSPRERAAERERMVLD 203
           AR E QE K +S +    GAS    SS     S G  +  L    + +  ER+ LD
Sbjct: 137 ARQENQEAKGESGMGCDSGASNSSSSSSNTTSSSGEASARLREEVQPSAPERLALD 192

>MYOD1_PIG (P49811) Myoblast determination protein 1|
          Length = 319

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
 Frame = +3

Query: 6   RHCYK-SFPANARTEEQEEKRKSILAL------VGGASKQVPSSPAVRISGGPKAESLSP 164
           R+CY  ++ + A +E +  K  ++ +L      V   S + P++PA+ ++  P+  S  P
Sbjct: 223 RNCYDGTYYSEAPSEPRPGKNAAVSSLDCLSSIVESISTESPAAPALLLADTPRESSPGP 282

Query: 165 RERAAERE 188
           +E AA  E
Sbjct: 283 QEAAAGSE 290

>K0182_HUMAN (Q14687) Protein KIAA0182 (Fragment)|
          Length = 1157

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 264 DPQLPQVSEDEAIVPGALLLYPEPSFLSQPPSLWDSDFLPLDL 136
           +P LPQ       +P  LL  P P  LS    + DS F PL+L
Sbjct: 99  EPPLPQEKAGGPAIPSHLLSTPYPFGLSPSSVVQDSRFPPLNL 141

>DYSF_MOUSE (Q9ESD7) Dysferlin (Dystrophy-associated fer-1-like protein)|
           (Fer-1-like protein 1)
          Length = 2083

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 222 PGALLLYPEPSFLSQPPSLWDSDFLP 145
           PGA+ L+P P+ L+  P+L D D +P
Sbjct: 128 PGAVPLFPPPASLAPSPTLPDMDLVP 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,886,693
Number of Sequences: 219361
Number of extensions: 1461768
Number of successful extensions: 4429
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4426
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)