ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19o18 |
|---|---|
| Clone Library Name | barley_pub |
>PVH1_YEAST (Q02256) Tyrosine-protein phosphatase YVH1 (EC 3.1.3.48) (PTPase| YVH1) Length = 364 Score = 31.2 bits (69), Expect = 1.0 Identities = 21/71 (29%), Positives = 38/71 (53%) Frame = -2 Query: 267 LVSSLRAREKVPSAEELR*VTDSLYSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTTSPA 88 LVS+ + S+++L +T++ S A++ K+ R+ +A STS + H P S+ S Sbjct: 200 LVSNSGMFKDSESSQDLDKLTEAEKSKVTAVRCKKCRTKLALSTSFIAHDPPSKE--SSE 257 Query: 87 GRLVKLPSVRH 55 G +K + H Sbjct: 258 GHFIKRAANSH 268
>ANK2_HUMAN (Q01484) Ankyrin-2 (Brain ankyrin) (Ankyrin-B) (Ankyrin,| nonerythroid) Length = 3924 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%) Frame = -2 Query: 195 YSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTT------SPAGRLVKLPSV 61 +SP ++ E S V+PST HSP S + T SP+G+ K P V Sbjct: 1833 HSPASSSSKTEKHSPVSPSTKTERHSPVSSTKTERHPPVSPSGKTDKRPPV 1883
>CRSP7_HUMAN (O95402) CRSP complex subunit 7 (Cofactor required for Sp1| transcriptional activation subunit 7) (Transcriptional coactivator CRSP70) (Activator-recruited cofactor 70 kDa component) (ARC70) Length = 600 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -2 Query: 201 SLYSPRNALKLKEPRSLVAPSTSLVCHSPSSRSTTSPAGRLVKLPS 64 SLY+P+ ++ PR +T + P ++ +T P RL LPS Sbjct: 289 SLYAPKGSVPSPSPRPQALDATQVPSPLPLAQPSTPPVRRLELLPS 334
>LPH_RABIT (P09849) Lactase-phlorizin hydrolase precursor| (Lactase-glycosylceramidase) [Includes: Lactase (EC 3.2.1.108); Phlorizin hydrolase (EC 3.2.1.62)] Length = 1926 Score = 29.3 bits (64), Expect = 3.9 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +2 Query: 116 GEWQTREVLGATNDRGSFNFSAFLGEYKLSVTY 214 G WQ V+ A D +F FSAF KL VT+ Sbjct: 506 GGWQNESVVDAFVDYAAFCFSAFGNRVKLWVTF 538
>EXON_HHV6U (P24447) Alkaline exonuclease (EC 3.1.11.-)| Length = 488 Score = 28.5 bits (62), Expect = 6.7 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Frame = -2 Query: 264 VSSLRAREKVPSAEELR*VTDSLYSPRNALKLKEPRSLVAPS-TSLVCHSPSSRST 100 V R R K+PS+ E D Y P+ L+ +++AP L+C + + +ST Sbjct: 275 VIEFRERGKIPSSREYLMTYDFQYRPQRKLRTCPTPAILAPHIKQLLCLNETQKST 330
>YPH2_THIVI (P45367) Hypothetical 41.3 kDa protein in phbC-phbA intergenic| region (ORF2) Length = 364 Score = 28.5 bits (62), Expect = 6.7 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Frame = -2 Query: 321 MHGSINQSNHGWRRMVMCLVSSLRAREKVPSAEELR*VTDSLYSPR-------NALKLKE 163 +HG + + +R + +V +P+ ELR + D L R AL E Sbjct: 256 IHGRLVNAQMALKRRMAIMVDENLGAMNMPTRSELRTLQDRLQETRRDNKQLHRALHALE 315 Query: 162 PR----SLVAPSTSLVCHSPSSRSTTSPAGR 82 + S P+T+L +P++++T PA R Sbjct: 316 KQVAALSGKTPTTALKAPAPATKATEKPATR 346
>UVRB_XANOR (Q5GXX4) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 688 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +2 Query: 86 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 232 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 442 PVGTQVDDLMSEIHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 496
>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)| Length = 1409 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/43 (32%), Positives = 25/43 (58%) Frame = +2 Query: 122 WQTREVLGATNDRGSFNFSAFLGEYKLSVTYLNSSAEGTFSLA 250 + T V G + +G+F F++ L YK L++ AEG ++L+ Sbjct: 893 FNTLTVNGKLSGQGTFQFTSSLFGYKSDKLKLSNDAEGDYTLS 935
>Y802_XYLFT (Q87D84) UPF0149 protein PD0802| Length = 185 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/36 (38%), Positives = 17/36 (47%) Frame = +2 Query: 5 GSCSGPPWXANATCYQMCLTDGNFTNLPAGDVVDRL 112 G C+GP W A M L D P G V++RL Sbjct: 40 GGCNGPDWLA------MILADAGVAAPPKGSVLERL 69
>UVRB_XANCP (Q8P7X1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +2 Query: 86 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 232 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481
>UVRB_XANC8 (Q4UW79) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +2 Query: 86 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 232 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481
>UVRB_XANAC (Q8PJB1) UvrABC system protein B (Protein uvrB) (Excinuclease ABC| subunit B) Length = 673 Score = 28.1 bits (61), Expect = 8.8 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%) Frame = +2 Query: 86 PAGDVVDRLLGEWQTREVLG------ATNDRGSFNFSAFLGEYKLSVTYLNSSAE 232 P G VD L+ E R LG R + N + +LGE+ + V YL+S + Sbjct: 427 PVGTQVDDLMSEVHERIKLGDRVLVTTLTKRMAENLTEYLGEHGIRVRYLHSDID 481 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,721,179 Number of Sequences: 219361 Number of extensions: 758553 Number of successful extensions: 2061 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2023 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2061 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
