ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19o17 |
|---|---|
| Clone Library Name | barley_pub |
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 94.4 bits (233), Expect = 2e-19 Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 1/95 (1%) Frame = +2 Query: 266 TEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDKHTA-GFVYLHFDSAT 442 T+ L NMF+P E + +D +I+DDV EEC+K G V HI+VDK++A G VY+ S Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482 Query: 443 AAASAQRSLHGRWFAGKMITATFMTAHQYEMKFPD 547 AA +A +LHGRWFAGKMITA ++ Y FPD Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 517
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 94.4 bits (233), Expect = 2e-19 Identities = 48/95 (50%), Positives = 63/95 (66%), Gaps = 1/95 (1%) Frame = +2 Query: 266 TEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDKHTA-GFVYLHFDSAT 442 T+ L NMF+P E + +D +I+DDV EEC+K G V HI+VDK++A G VY+ S Sbjct: 423 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIA 482 Query: 443 AAASAQRSLHGRWFAGKMITATFMTAHQYEMKFPD 547 AA +A +LHGRWFAGKMITA ++ Y FPD Sbjct: 483 AAIAAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 517
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 75.1 bits (183), Expect = 1e-13 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Frame = +2 Query: 278 LLKNMFDPSVETDPDFDLDIRDDVQEECS-KFGVVKHIFVDKHTAGFVYLHFDSATAAAS 454 LL+NMF+P+ ET P++ ++ DV+EEC K+G V HI V + G +++ F++A A Sbjct: 510 LLENMFNPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEK 569 Query: 455 AQRSLHGRWFAGKMITATFMTAHQYEMKFPD 547 A LH RWF G+ I A+ + Y KFP+ Sbjct: 570 AITGLHQRWFGGRTIKASILPETDYYFKFPN 600
>MAN1_HUMAN (Q9Y2U8) Inner nuclear membrane protein Man1 (LEM domain containing| protein 3) Length = 911 Score = 69.3 bits (168), Expect = 7e-12 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Frame = +2 Query: 188 LLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSK 367 +LV P G + +++ + T L ++NMFDP +E + L I++ + E+CS Sbjct: 757 ILVIPSKVWQGQAFHLDRRNSPPNSLTPCLKIRNMFDPVMEIGDQWHLAIQEAILEKCSD 816 Query: 368 FGVVKHIFVDKHTA-GFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQYEMKFP 544 + HI VDK++ G VY+ S A A ++LHG WF GK++T ++ +Y +FP Sbjct: 817 NDGIVHIAVDKNSREGCVYVKCLSPEYAGKAFKALHGSWFDGKLVTVKYLRLDRYHHRFP 876
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 62.4 bits (150), Expect = 8e-10 Identities = 43/143 (30%), Positives = 72/143 (50%), Gaps = 7/143 (4%) Frame = +2 Query: 131 SSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKNMFDPSVE 310 +SVG A + A T S+++Q VPG +S G PTE L L NM P Sbjct: 283 ASVG--AKNAQNAANTTQSVMLQ----VPG-----LSNVVTSGPPTEVLCLLNMVTPDEL 331 Query: 311 TDPDFDLDIRDDVQEECSKFGVVKHIFVDKHTAGF-------VYLHFDSATAAASAQRSL 469 D + DI +D++EEC+K+GVV+ + + + G V++ F+S AQ++L Sbjct: 332 RDEEEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQAL 391 Query: 470 HGRWFAGKMITATFMTAHQYEMK 538 GR F+ +++ ++ +Y + Sbjct: 392 TGRKFSDRVVVTSYFDPDKYHRR 414
>UHMK1_MOUSE (P97343) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 58.5 bits (140), Expect = 1e-08 Identities = 41/126 (32%), Positives = 61/126 (48%), Gaps = 3/126 (2%) Frame = +2 Query: 164 GAPLTAASLLVQPVGAVPGAPLPIISQSAD-IGTPTEFLLLKNMFDPSVETDPDFDLDIR 340 G + A L P ++P AP D + PT L L N+ D + D D+ Sbjct: 290 GRRIPAEMALCSPFFSIPFAP-----HIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVV 344 Query: 341 DDVQEECSKFGVVKHIFVDKHT--AGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFM 514 +DV+EEC K+G V + V K G V++ + +A + +AQ+ L GR F GK + ATF Sbjct: 345 EDVKEECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFY 404 Query: 515 TAHQYE 532 Y+ Sbjct: 405 PLSAYK 410
>UHMK1_RAT (Q63285) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) (PAM COOH-terminal interactor protein 2) (P-CIP2) Length = 419 Score = 57.4 bits (137), Expect = 3e-08 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 3/123 (2%) Frame = +2 Query: 173 LTAASLLVQPVGAVPGAPLPIISQSAD-IGTPTEFLLLKNMFDPSVETDPDFDLDIRDDV 349 + A L P ++P AP D + PT L L N+ D + D D+ +DV Sbjct: 293 IPAEMALCSPFFSIPFAP-----HIEDLVMLPTPVLRLLNVLDDDYLENEDEYEDVVEDV 347 Query: 350 QEECSKFGVVKHIFVDKHT--AGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAH 523 +EEC K+G V + V K G V++ + +A + +AQ+ L GR F GK + ATF Sbjct: 348 KEECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLS 407 Query: 524 QYE 532 Y+ Sbjct: 408 AYK 410
>UHMK1_HUMAN (Q8TAS1) Serine/threonine-protein kinase Kist (EC 2.7.11.1) (Kinase| interacting with stathmin) (U2AF homology motif kinase 1) Length = 419 Score = 56.6 bits (135), Expect = 4e-08 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 2/122 (1%) Frame = +2 Query: 173 LTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKNMFDPSVETDPDFDLDIRDDVQ 352 + A L P ++P AP I + TP LL + D +E + +++ D+ +DV+ Sbjct: 293 IPAEMALCSPFFSIPFAPH--IEDLVMLPTPV-LRLLNVLDDDYLENEEEYE-DVVEDVK 348 Query: 353 EECSKFGVVKHIFVDKHT--AGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQ 526 EEC K+G V + V K G V++ + +A + +AQ+ L GR F GK + ATF Sbjct: 349 EECQKYGPVVSLLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSA 408 Query: 527 YE 532 Y+ Sbjct: 409 YK 410
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Frame = +2 Query: 131 SSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKNMFDPSVE 310 +SVG A+++ P T V VPG + SQ G PTE L L NM P Sbjct: 335 ASVGAKNATLVSLPSTINQTPVTL--QVPGL---MSSQVQMGGHPTEVLCLMNMVLPEEL 389 Query: 311 TDPDFDLDIRDDVQEECSKFGVVKHIFVDKHT-------AGFVYLHFDSATAAASAQRSL 469 D + +I +DV++ECSK+G+VK I + + G +++ F S A + L Sbjct: 390 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 449 Query: 470 HGRWFAGKMITATFMTAHQYEMK 538 GR FA +++ + Y + Sbjct: 450 TGRKFANRVVVTKYCDPDSYHRR 472
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 55.5 bits (132), Expect = 1e-07 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 7/143 (4%) Frame = +2 Query: 131 SSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKNMFDPSVE 310 +SVG A+++ P T V VPG + SQ G PTE L L NM P Sbjct: 335 ASVGAKNATLVSPPSTINQTPVTL--QVPGL---MSSQVQMGGHPTEVLCLMNMVLPEEL 389 Query: 311 TDPDFDLDIRDDVQEECSKFGVVKHIFVDKHT-------AGFVYLHFDSATAAASAQRSL 469 D + +I +DV++ECSK+G+VK I + + G +++ F S A + L Sbjct: 390 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 449 Query: 470 HGRWFAGKMITATFMTAHQYEMK 538 GR FA +++ + Y + Sbjct: 450 TGRKFANRVVVTKYCDPDSYHRR 472
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 54.7 bits (130), Expect = 2e-07 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 8/106 (7%) Frame = +2 Query: 236 ISQSADIGTPTEFLLLKNMF-DPSVETDPDFDLDIRDDVQEECSKFGVVKHIFV----DK 400 I S G TE L L NM + + +D D++ +I +DV+EECSK+G+V+ + + D Sbjct: 378 IDLSQGAGRATEILCLMNMVTEDELRSDEDYE-EILEDVREECSKYGIVRSLEIPRPYDD 436 Query: 401 HT---AGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQY 529 H G V++ F + + AQ +L GR FA + + ++ +Y Sbjct: 437 HPVPGVGKVFVEFATTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 482
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 51.6 bits (122), Expect = 1e-06 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Frame = +2 Query: 236 ISQSADIGTPTEFLLLKNMF-DPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDK---- 400 I S G TE L L NM + ++ D +++ +I +DV++ECSK+G+V+ + + + Sbjct: 387 IDLSQGAGRATEILCLMNMVTEDELKADDEYE-EILEDVRDECSKYGIVRSLEIPRPYED 445 Query: 401 ---HTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQY 529 G V++ F S + AQ +L GR FA + + ++ +Y Sbjct: 446 HPVPGVGKVFVEFASTSDCQRAQAALTGRKFANRTVVTSYYDVDKY 491
>DR111_ARATH (P42698) DNA-damage-repair/toleration protein DRT111, chloroplast| precursor Length = 387 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%) Frame = +2 Query: 257 GTPTEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDK--------HTAG 412 G PT LLL+NM P D ++ D+V EC K+G V + + + H A Sbjct: 279 GEPTRVLLLRNMVGPGQVDD-----ELEDEVGGECGKYGTVTRVLIFEITEPNFPVHEAV 333 Query: 413 FVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQY 529 +++ F A L GR+F G+ + ATF ++ Sbjct: 334 RIFVQFSRPEETTKALVDLDGRYFGGRTVRATFYDEEKF 372
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 12/89 (13%) Frame = +2 Query: 275 LLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKH--IFVDKHTAG----------FV 418 ++L+NM P D D +++++QEECSKFG V IF +K T + Sbjct: 539 IILRNMVGPE-----DVDETLQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKI 593 Query: 419 YLHFDSATAAASAQRSLHGRWFAGKMITA 505 ++ F + A + +L GR+F G+ + A Sbjct: 594 FVEFSAGAEAMRGKEALDGRFFGGRRVVA 622
>SPF45_HUMAN (Q96I25) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 401 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = +2 Query: 263 PTEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDK------HTAGFVYL 424 PT+ +LL+NM + D D+ + +EEC K+G V + + A ++L Sbjct: 303 PTKVVLLRNMVGAG-----EVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFL 357 Query: 425 HFDSATAAASAQRSLHGRWFAGKMITATFMTAHQYEM 535 F+ +A A L+GR+F G+++ A F ++ + Sbjct: 358 EFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRV 394
>SPF45_MOUSE (Q8JZX4) Splicing factor 45 (45 kDa splicing factor) (RNA-binding| motif protein 17) Length = 405 Score = 43.9 bits (102), Expect = 3e-04 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%) Frame = +2 Query: 263 PTEFLLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDK------HTAGFVYL 424 PT+ +LL+NM + D D+ + +EEC K+G V + + A ++L Sbjct: 307 PTKVVLLRNMVGAG-----EVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFL 361 Query: 425 HFDSATAAASAQRSLHGRWFAGKMITATFMTAHQYEM 535 F+ +A A L+GR+F G+++ A F ++ + Sbjct: 362 EFERVESAIKAVVDLNGRYFGGRVVKACFYNLDKFRV 398
>CUP52_GALME (Q24998) Pupal cuticle protein PCP52 precursor (GMPCP52)| Length = 353 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Frame = +2 Query: 38 NASSRALLMRKLDRSGTATSLTGGIGAPGLNSSV---GLPAASVLGAPLTAASLLVQPV 205 +AS + L +S AT L+ AP +SSV G+PA+++ APLTAASL+ P+ Sbjct: 252 SASETGVSAASLSQSPVATPLSAAPLAPLPSSSVPLAGVPASAIAAAPLTAASLIASPL 310
>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) Length = 479 Score = 37.7 bits (86), Expect = 0.021 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%) Frame = +2 Query: 239 SQSADIGTPTEFLLLKNMF-------------DPSV-------ETDPDFDLDIRDDVQEE 358 S+ + T + LL+K+MF DP ET F LD +DV E Sbjct: 193 SRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQF-LDFYEDVLPE 251 Query: 359 CSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQ 526 G V V + H G VY+ + S +A +GRW+AG+ + F + Sbjct: 252 FKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTR 311 Query: 527 YEM 535 ++M Sbjct: 312 WKM 314
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 37.7 bits (86), Expect = 0.021 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 24/123 (19%) Frame = +2 Query: 239 SQSADIGTPTEFLLLKNMF-------------DPSV-------ETDPDFDLDIRDDVQEE 358 S+ + T + LL+K+MF DP ET F LD +DV E Sbjct: 188 SRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASLEYSEEETYQQF-LDFYEDVLPE 246 Query: 359 CSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQ 526 G V V + H G VY+ + S +A +GRW+AG+ + F + Sbjct: 247 FKNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTR 306 Query: 527 YEM 535 ++M Sbjct: 307 WKM 309
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 35.4 bits (80), Expect = 0.11 Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 23/122 (18%) Frame = +2 Query: 239 SQSADIGTPTEFLLLKNMF-----DPSVETDPDFD--------------LDIRDDVQEEC 361 S+ D T + LL+K+MF + D D D LD DV E Sbjct: 179 SRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANLEYSEEETYQQFLDFYHDVLPEF 238 Query: 362 SKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQY 529 G V V + H G VY+ + S +A +GRW+AG+ + F ++ Sbjct: 239 KNVGKVIQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRW 298 Query: 530 EM 535 ++ Sbjct: 299 KV 300
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1| protein) (Nuclear polyadenylated RNA-binding protein 1) Length = 414 Score = 35.0 bits (79), Expect = 0.14 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Frame = +2 Query: 323 FDLDIRD-DVQEECSKFGVVKHIFVDKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMI 499 F LD+++ ++ E FG +K + K GF ++ F+ A +AA A +HG+ FA + + Sbjct: 132 FPLDVQESELNEIFGPFGPMKEV---KILNGFAFVEFEEAESAAKAIEEVHGKSFANQPL 188 Query: 500 TATF 511 + Sbjct: 189 EVVY 192
>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) Length = 462 Score = 35.0 bits (79), Expect = 0.14 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 23/122 (18%) Frame = +2 Query: 239 SQSADIGTPTEFLLLKNMFDP-------SVETDPDFDLDIRD------------DVQEEC 361 S+ + T + LL+K MF + DPD L+ + DV E Sbjct: 192 SRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPDSSLEFSEEEIYQQFLDFYYDVLPEF 251 Query: 362 SKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITATFMTAHQY 529 G V V + H G VY+ + S +A +GRW+AG+ + F ++ Sbjct: 252 KSVGKVIQFKVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRW 311 Query: 530 EM 535 +M Sbjct: 312 KM 313
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 5/79 (6%) Frame = +2 Query: 278 LLKNMFDPSVETDPDFDLDIRDDVQEECS-KFGVVKHIFV----DKHTAGFVYLHFDSAT 442 L+ N+ D ++ D + +DV EC K+G ++ + V H G VY+ F + Sbjct: 67 LVANVSDEEMQEHYD---NFFEDVFVECEDKYGEIEEMNVCDNLGDHLVGNVYIKFRNEA 123 Query: 443 AAASAQRSLHGRWFAGKMI 499 A A L+ RWF G+ + Sbjct: 124 DAEKAANDLNNRWFGGRPV 142
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 34.7 bits (78), Expect = 0.18 Identities = 29/81 (35%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Frame = +2 Query: 101 TGGIGA-PGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFL 277 TGG G PG +G P LG P P PG P G P F Sbjct: 1158 TGGQGNFPG---GIGFPGEGPLGRPSNLPQSSADPALCKPGGP----------GAPDSFT 1204 Query: 278 LLKNMFDPSVETDPDFDLDIR 340 +L N PSV TDPD IR Sbjct: 1205 VLGNSM-PSVFTDPDLQEVIR 1224
>ELN_HUMAN (P15502) Elastin precursor (Tropoelastin)| Length = 786 Score = 33.9 bits (76), Expect = 0.31 Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Frame = +2 Query: 41 ASSRALLMRKLDRSGTATSLTGGIGAPGLNSSV-GLPAASVLGAPLTAASLLVQPVGAVP 217 A++ A K + G A L G PG V G+P A V G + A + V P +P Sbjct: 303 AAAAAAAAAKAAKYGAAAGLVPG--GPGFGPGVVGVPGAGVPGVGVPGAGIPVVPGAGIP 360 Query: 218 GAPLP-IISQSA 250 GA +P ++S A Sbjct: 361 GAAVPGVVSPEA 372
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 341 DDVQEECSKFGVVKHIFVD-----KHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITA 505 +D++ E ++G + ++V + GF Y+ F+ A A +L +W G+ I Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83 Query: 506 TF 511 F Sbjct: 84 QF 85
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 33.5 bits (75), Expect = 0.40 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = +2 Query: 341 DDVQEECSKFGVVKHIFVD-----KHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITA 505 +D++ E ++G + ++V + GF Y+ F+ A A +L +W G+ I Sbjct: 24 EDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEI 83 Query: 506 TF 511 F Sbjct: 84 QF 85
>SF3B2_HUMAN (Q13435) Splicing factor 3B subunit 2 (Spliceosome-associated| protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit) Length = 872 Score = 33.5 bits (75), Expect = 0.40 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Frame = -2 Query: 267 VGVPISAD*E-MIGRGAPGTAPTGCTRREAAVRGAPSTDAAGNPTDEFNPGAPMPPVKLV 91 +G PI + E ++ R T TG +RG AA P PG PMPP L Sbjct: 16 IGAPIQGNREELVERLQSYTRQTGIVLNRPVLRGEDGDKAAPPPMSAQLPGIPMPPPPLG 75 Query: 90 AVPLR 76 PL+ Sbjct: 76 LPPLQ 80
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 32.7 bits (73), Expect = 0.68 Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 5/62 (8%) Frame = +2 Query: 341 DDVQEECSKFGVVKHIFVD-----KHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITA 505 +D++ E ++G + +++ + GF Y+ F+ A A +L+ +W G+ I Sbjct: 24 EDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEI 83 Query: 506 TF 511 F Sbjct: 84 QF 85
>SNPC4_HUMAN (Q5SXM2) snRNA-activating protein complex subunit 4 (SNAPc subunit 4)| (snRNA-activating protein complex 190 kDa subunit) (SNAPc 190 kDa subunit) (Proximal sequence element-binding transcription factor alpha subunit) (PSE-binding factor alpha Length = 1469 Score = 32.7 bits (73), Expect = 0.68 Identities = 27/68 (39%), Positives = 30/68 (44%) Frame = +2 Query: 110 IGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTPTEFLLLKN 289 IG P + +SV LP VL TA LL PV AV P P GTP LL Sbjct: 1063 IGGPHVATSVPLPVTWVL----TAQGLLPVPVPAVVSLPRP-------AGTPGPAGLLAT 1111 Query: 290 MFDPSVET 313 + P ET Sbjct: 1112 LLPPLTET 1119
>RBP1_DROME (Q02427) RNA-binding protein 1| Length = 144 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/54 (24%), Positives = 30/54 (55%) Frame = +2 Query: 338 RDDVQEECSKFGVVKHIFVDKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMI 499 + +++ +K+G +++++V ++ GF ++ F+ A A R+L G G I Sbjct: 24 KHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTRCCGTRI 77
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 31.6 bits (70), Expect = 1.5 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +2 Query: 344 DVQEECSKFGVVKHIFVDKHTAGFVYLHFDSATAAASAQRSLHGRWFAG 490 +++E +FG ++ ++V + GF ++ +D A A R+L G G Sbjct: 18 ELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRICG 66
>HRPZ_PSESM (Q887C6) Harpin hrpZ (HrpZ-Pst protein) (Harpin-Pst)| Length = 370 Score = 31.6 bits (70), Expect = 1.5 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Frame = +2 Query: 77 RSGTATSLT--GGIGAPGLNSSVGLPAASVLGAPLTAASLLV---QPVGAVPGAPLPIIS 241 + G A+ +T GG+G+P +SS+G PA P + V Q +G + L +S Sbjct: 224 QQGDASGVTSGGGLGSPVSDSSLGNPAIDANTGPAANGNASVDVGQLIGQLIDRGLQSVS 283 Query: 242 QSADIGTPTE 271 +GTP + Sbjct: 284 SGGGLGTPVD 293
>EFG_ANASP (Q8YP62) Elongation factor G (EF-G)| Length = 692 Score = 31.6 bits (70), Expect = 1.5 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 1/104 (0%) Frame = +2 Query: 47 SRALLMRKLDRSGTATSLTGGIGAP-GLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGA 223 SR +LM+ DR G +GA GL ++ + GAP+ SL + Sbjct: 350 SRLVLMKADDRQDVEELRAGDLGAALGLKDTLTGDTITDEGAPVILESLFI--------- 400 Query: 224 PLPIISQSADIGTPTEFLLLKNMFDPSVETDPDFDLDIRDDVQE 355 P P+IS + + T + L E DP F +++ + + Sbjct: 401 PEPVISVAVEPKTKNDMDKLSKALQSLSEEDPTFRVNVDPETNQ 444
>YFGG_SCHPO (O13854) Hypothetical serine/threonine-rich protein C19G12.16c| precursor Length = 670 Score = 31.2 bits (69), Expect = 2.0 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +2 Query: 86 TATSLTGGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTP 265 +++S T G+P N+S LP++ + A L+++S+L + P+ + S S TP Sbjct: 210 SSSSFTTTTGSPYYNTSSFLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTP 269 Query: 266 T 268 + Sbjct: 270 S 270
>U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor| 23 kDa subunit) (U2 snRNP auxiliary factor small subunit) (U2AF23) Length = 216 Score = 31.2 bits (69), Expect = 2.0 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%) Frame = +2 Query: 341 DDVQEECSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITA 505 +D+ E SK+G V+ + V H G VY+ F +A +A L+ RW++ + + A Sbjct: 78 EDMFCEFSKYGEVEQLVVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYA 136
>HOW_DROME (O01367) Protein held out wings (KH-domain protein KH93F) (Putative| RNA-binding protein) (Protein muscle-specific) (Protein wings held out) (Protein struthio) (Quaking-related 93F) Length = 405 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = +2 Query: 65 RKLDRSGTATSLTGGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQ 244 R+L + + LT G PGL + + PAA+ LGAP L++ P VP I+S Sbjct: 275 RRLVAASDSRLLTS-TGLPGLAAQIRAPAAAPLGAP-----LILNPRMTVPTTAASILSA 328 Query: 245 SA 250 A Sbjct: 329 QA 330
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 30.8 bits (68), Expect = 2.6 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +2 Query: 86 TATSLTGGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAP 226 T T++ GG+G P G A+ A L A+ L GA PGAP Sbjct: 274 TTTAMAGGVGGP------GAAGANPNAAALMASLLNAGQTGAYPGAP 314
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 30.4 bits (67), Expect = 3.4 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 4/57 (7%) Frame = +2 Query: 341 DDVQEECSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMI 499 DDV+E +KFG++ + V H+ GF + ++ +A +A ++ G F G+++ Sbjct: 322 DDVREHFAKFGILVEVHVPLDSKGHSKGFAMIRYEKPASALAAFQT-DGTVFQGRIV 377
>EPN1_RAT (O88339) Epsin-1 (EPS-15-interacting protein 1)| Length = 575 Score = 30.4 bits (67), Expect = 3.4 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = +2 Query: 113 GAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIIS 241 GAP SV P A LT L + PV VPGAP IS Sbjct: 507 GAPATGPSVTNPFQPAPPATLTLNQLRLSPVPPVPGAPPTYIS 549
>GR65_MOUSE (Q91X51) Golgi reassembly-stacking protein 1 (Golgi| reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi peripheral membrane protein p65) Length = 445 Score = 30.4 bits (67), Expect = 3.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +2 Query: 146 PAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGT 262 P A+ G P T + L P+GA P P+P S ++G+ Sbjct: 212 PGATPPGTPATTSQLTAFPLGAPPPWPIPQDSSGPELGS 250
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 30.0 bits (66), Expect = 4.4 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%) Frame = +2 Query: 338 RDDVQEECSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMITA 505 R DV E + FG +K + V DK GF ++ F A +A LHG G+ + Sbjct: 776 RKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLHGVHLLGRRLVM 835 Query: 506 TF 511 + Sbjct: 836 QY 837
>ERMA_ARTS3 (P09891) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)| (Macrolide-lincosamide-streptogramin B resistance protein) (Erythromycin resistance protein) Length = 340 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/42 (38%), Positives = 18/42 (42%) Frame = -2 Query: 228 RGAPGTAPTGCTRREAAVRGAPSTDAAGNPTDEFNPGAPMPP 103 RG PG P R + G P DA G T + G P PP Sbjct: 298 RGRPGGGP----RPDGRAGGGPRRDAGGRRTGDGRGGRPRPP 335
>ZN687_MOUSE (Q9D2D7) Zinc finger protein 687| Length = 1237 Score = 30.0 bits (66), Expect = 4.4 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = -2 Query: 240 EMIGRGAPGTAPTGCTRRE----AAVRGAPSTDAAGNPTDEFNPGAPMPP 103 E +G+GA G T T E + AP+T+ + + ++E P +P PP Sbjct: 889 EAVGKGAGGALLTPKTEPEELAVSQAEAAPATEESSSSSEEELPSSPEPP 938
>EPN1_MOUSE (Q80VP1) Epsin-1 (EPS-15-interacting protein 1)| (Intersectin-EH-binding protein 1) (Ibp1) Length = 566 Score = 29.6 bits (65), Expect = 5.8 Identities = 19/43 (44%), Positives = 20/43 (46%) Frame = +2 Query: 113 GAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIIS 241 GAP SV P A LT L + PV VPGAP IS Sbjct: 498 GAPPTGPSVTNPFQPAPPATLTLNQLRLSPVPPVPGAPPTYIS 540
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 29.6 bits (65), Expect = 5.8 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 13/85 (15%) Frame = +2 Query: 296 DPSVETDPD--------FDLDIRDDVQEEC-----SKFGVVKHIFVDKHTAGFVYLHFDS 436 DP + DP+ F ++ + V EE S+FG ++ + K + ++HFD Sbjct: 324 DPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV---KKLKDYAFIHFDE 380 Query: 437 ATAAASAQRSLHGRWFAGKMITATF 511 A A ++G+ G+ I F Sbjct: 381 RDGAVKAMEEMNGKDLEGENIEIVF 405
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 29.6 bits (65), Expect = 5.8 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 13/85 (15%) Frame = +2 Query: 296 DPSVETDPD--------FDLDIRDDVQEEC-----SKFGVVKHIFVDKHTAGFVYLHFDS 436 DP + DP+ F ++ + V EE S+FG ++ + K + ++HFD Sbjct: 324 DPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV---KKLKDYAFIHFDE 380 Query: 437 ATAAASAQRSLHGRWFAGKMITATF 511 A A ++G+ G+ I F Sbjct: 381 RDGAVKAMEEMNGKDLEGENIEIVF 405
>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 238 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = +2 Query: 305 VETDPDFDLDIRDDVQEECSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLH 472 VE +D + E K+G V+ + V H G VY+ F A A L+ Sbjct: 71 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 130 Query: 473 GRWFAGKMITA 505 RWF G+ I A Sbjct: 131 NRWFNGQPIHA 141
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 29.6 bits (65), Expect = 5.8 Identities = 13/54 (24%), Positives = 28/54 (51%) Frame = +2 Query: 338 RDDVQEECSKFGVVKHIFVDKHTAGFVYLHFDSATAAASAQRSLHGRWFAGKMI 499 +DD++ E +K+G + +++ + GF ++ F+ A A L+G G + Sbjct: 20 KDDLEGEFTKYGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILNGSELLGSQL 73
>CSPG3_HUMAN (O14594) Neurocan core protein precursor (Chondroitin sulfate| proteoglycan 3) Length = 1321 Score = 29.6 bits (65), Expect = 5.8 Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Frame = +2 Query: 86 TATSLTGGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGTP 265 TAT TG G PG S V A S + P +V L S SA +G+P Sbjct: 743 TATEPTGLRGIPGSESGVFDTAESPTSGLQATVDEVQDPWPSVYSKGLDASSPSAPLGSP 802 Query: 266 TEFLLLK--NMFDPSVETD 316 FL+ K +P V TD Sbjct: 803 GVFLVPKVTPNLEPWVATD 821
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 29.6 bits (65), Expect = 5.8 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = +2 Query: 341 DDVQEECSKFGVVK--HIFVDKHTA---GFVYLHFDSATAAASAQRSLHGRWFAGKMI 499 +D + S++G ++ HI +D T GF+Y+ F A A RSL + F G+++ Sbjct: 324 EDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLL 381
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 29.6 bits (65), Expect = 5.8 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 13/85 (15%) Frame = +2 Query: 296 DPSVETDPD--------FDLDIRDDVQEEC-----SKFGVVKHIFVDKHTAGFVYLHFDS 436 DP + DP+ F ++ + V EE S+FG ++ + K + ++HFD Sbjct: 234 DPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV---KKLKDYAFIHFDE 290 Query: 437 ATAAASAQRSLHGRWFAGKMITATF 511 A A ++G+ G+ I F Sbjct: 291 RDGAVKAMEEMNGKDLEGENIEIVF 315
>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor| 35 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 239 Score = 29.6 bits (65), Expect = 5.8 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Frame = +2 Query: 305 VETDPDFDLDIRDDVQEECSKFGVVKHIFV----DKHTAGFVYLHFDSATAAASAQRSLH 472 VE +D + E K+G V+ + V H G VY+ F A A L+ Sbjct: 71 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 130 Query: 473 GRWFAGKMITA 505 RWF G+ I A Sbjct: 131 NRWFNGQPIHA 141
>ANX11_MOUSE (P97384) Annexin A11 (Annexin XI) (Calcyclin-associated annexin 50)| (CAP-50) Length = 503 Score = 29.3 bits (64), Expect = 7.6 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +2 Query: 104 GGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAP 226 GG PG+ S P A V G P+ QP GA PG P Sbjct: 109 GGNPPPGMPSYPAYPGAPVPGQPMPPTG--QQPPGAYPGQP 147
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 29.3 bits (64), Expect = 7.6 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 7/64 (10%) Frame = +2 Query: 80 SGTATSLTGGIGAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVP-------GAPLPII 238 SGT + +G G PG +S G + + LGAP + S VG+ P G P Sbjct: 1076 SGTFSFGSGQSGTPGTTTSFGSLSQNTLGAP-SQGSPFAFSVGSTPESKPVFGGTSTPTF 1134 Query: 239 SQSA 250 QSA Sbjct: 1135 GQSA 1138
>EP300_HUMAN (Q09472) E1A-associated protein p300 (EC 2.3.1.48)| Length = 2414 Score = 28.9 bits (63), Expect = 9.9 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 8/71 (11%) Frame = +2 Query: 38 NASSRALLMRKLDRSGTATSLTGGIGAPG-------LNSSVGLPAA-SVLGAPLTAASLL 193 +A+S+ + +L RSG++ +L G+G PG SS GL S++ +P+T A L Sbjct: 73 DAASKHKQLSELLRSGSSPNLNMGVGGPGQVMASQAQQSSPGLGLINSMVKSPMTQAGLT 132 Query: 194 VQPVGAVPGAP 226 +G P Sbjct: 133 SPNMGMGTSGP 143
>DPO3A_STAES (Q8CNX0) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1065 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 275 LLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDKHTAGFV 418 LL + +P T PD D+D D +E+ K+ V+ + + H +G V Sbjct: 332 LLFERFLNPERVTMPDIDIDFEDTRREKVIKY--VQDKYGEHHVSGIV 377
>DPO3A_STAEQ (Q5HNK2) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 1065 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +2 Query: 275 LLLKNMFDPSVETDPDFDLDIRDDVQEECSKFGVVKHIFVDKHTAGFV 418 LL + +P T PD D+D D +E+ K+ V+ + + H +G V Sbjct: 332 LLFERFLNPERVTMPDIDIDFEDTRREKVIKY--VQDKYGEHHVSGIV 377
>SIX5_HUMAN (Q8N196) Homeobox protein SIX5 (DM locus-associated homeodomain| protein) Length = 739 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 143 LPAASVLGAPLTAASLLVQPVGAVPGAPLPIISQSADIGT 262 LP A L PL + + P G +P AP P + ++ +GT Sbjct: 577 LPPAPGLALPLKPETAISVPEGGLPVAPSPALPEAHALGT 616
>EPN1_HUMAN (Q9Y6I3) Epsin-1 (EPS-15-interacting protein 1) (EH domain-binding| mitotic phosphoprotein) Length = 551 Score = 28.9 bits (63), Expect = 9.9 Identities = 18/43 (41%), Positives = 19/43 (44%) Frame = +2 Query: 113 GAPGLNSSVGLPAASVLGAPLTAASLLVQPVGAVPGAPLPIIS 241 G P SV P A LT L + PV VPGAP IS Sbjct: 483 GGPATGPSVTNPFQPAPPATLTLNQLRLSPVPPVPGAPPTYIS 525
>C4D20_DROME (Q9W011) Probable cytochrome P450 4d20 (EC 1.14.-.-) (CYPIVD20)| Length = 510 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 218 GAPLPIISQSADIGTPTEFLLLKNMFDPSVETDPDFDLDIRDDV 349 G P+ A+IG+ ++ LL + S+ P D DIR++V Sbjct: 267 GTYRPLSLGDAEIGSKSQMALLDILLQSSINNQPLSDADIREEV 310
>C4D21_DROME (Q9VLZ7) Probable cytochrome P450 4d21 (EC 1.14.-.-) (CYPIVD21)| Length = 511 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +2 Query: 218 GAPLPIISQSADIGTPTEFLLLKNMFDPSVETDPDFDLDIRDDV 349 G P+I DIG + LL + +++ P D+DIR++V Sbjct: 267 GTYKPLIMGDDDIGGKAKMTLLDILLQATIDNKPLSDVDIREEV 310
>CT129_MOUSE (Q9D7I8) Protein C20orf129 homolog| Length = 585 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 302 SVETDPDFDLDIRDDVQEECSKFGVVKHIFVDK 400 +V D D+DI D+QE C K GV +I +D+ Sbjct: 161 AVVMDVFSDIDIFRDLQESCRKRGVAVYILLDQ 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,567,746 Number of Sequences: 219361 Number of extensions: 1379643 Number of successful extensions: 6116 Number of sequences better than 10.0: 63 Number of HSP's better than 10.0 without gapping: 5501 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6071 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
