ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19n20 |
|---|---|
| Clone Library Name | barley_pub |
>ASO_TOBAC (Q40588) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)| (ASO) Length = 578 Score = 65.9 bits (159), Expect = 9e-11 Identities = 46/123 (37%), Positives = 70/123 (56%), Gaps = 6/123 (4%) Frame = +3 Query: 255 INNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRAT---SVRR 425 INNVS LP L Y +++ T + PD P+ ++ K + P S +T V Sbjct: 392 INNVSLVLPTQLYLGSIRY--GINAFDT-KPPPDNFPKDYDVLK-QAPNSNSTYGNGVYM 447 Query: 426 LRYNATVEIVFQSP-VLADTYA--NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPV 596 L++N T++I+ Q+ LA + +P HLHG D +VL G G++ +EKDV +NL +PP+ Sbjct: 448 LKFNTTIDIILQNANALAKDVSEIHPWHLHGHDFWVLGYGEGKF-SEKDVKKFNLKNPPL 506 Query: 597 RNT 605 RNT Sbjct: 507 RNT 509
>ASO_CUCSA (P14133) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)| (ASO) Length = 587 Score = 55.5 bits (132), Expect = 1e-07 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Frame = +3 Query: 255 INNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKM--RKPTSRATSVRRL 428 INNVS LP T L A +++ P+ P ++ T+ V + Sbjct: 399 INNVSLALPPTPYL--AAMKMRLNTAFNQNPPPETFPLNYDINNPPPNPETTTGNGVYKF 456 Query: 429 RYNATVEIVFQSPVLAD---TYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVR 599 TV+++ Q+ + + + +P HLHG D +VL G G++ A +D NL +PP+R Sbjct: 457 NMGETVDVILQNANMLNPNMSEIHPWHLHGHDFWVLGYGEGKFYAPEDEKKLNLKNPPLR 516 Query: 600 NTV 608 NTV Sbjct: 517 NTV 519
>ASO_CUCPM (P37064) L-ascorbate oxidase (EC 1.10.3.3) (Ascorbase) (ASO)| Length = 552 Score = 51.2 bits (121), Expect = 2e-06 Identities = 51/188 (27%), Positives = 86/188 (45%), Gaps = 7/188 (3%) Frame = +3 Query: 66 PEMPDRHDSDTSFYFHGNLTSLQPHPLLRPVPANVHEHLFYALDSGNLCPHGESSCINHL 245 P+ P D D S F +T+ P +P P + +F L++ N+ ++ Sbjct: 312 PQTPAWDDFDRSKNFTYRITAAMGSP--KP-PVKFNRRIFL-LNTQNVIN-------GYV 360 Query: 246 GPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRAT---- 413 IN+VS LP T L Y N+ P+ P ++ PT+ T Sbjct: 361 KWAINDVSLALPPTPYLGAMKY--NLLHAFDQNPPPEVFPEDYDIDT--PPTNEKTRIGN 416 Query: 414 SVRRLRYNATVEIVFQSPVLAD---TYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLV 584 V + + V+++ Q+ + + +P HLHG D +VL G G++ AE++ ++ NL Sbjct: 417 GVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDGKFSAEEE-SSLNLK 475 Query: 585 DPPVRNTV 608 +PP+RNTV Sbjct: 476 NPPLRNTV 483
>ASO_CUCMA (P24792) L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase)| (ASO) Length = 579 Score = 50.1 bits (118), Expect = 5e-06 Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 7/188 (3%) Frame = +3 Query: 66 PEMPDRHDSDTSFYFHGNLTSLQPHPLLRPVPANVHEHLFYALDSGNLCPHGESSCINHL 245 PE P D D S F +T+ P PV +N + L++ N+ ++ Sbjct: 342 PETPAWDDFDRSKNFTYRITAAMGSPK-PPVKSN---RRIFLLNTQNVIN-------GYV 390 Query: 246 GPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRATS--- 416 IN+VS LP T L + N+ P+ P ++ PT+ T Sbjct: 391 KWAINDVSLALPPTPYLGAMKF--NLLHAFDQNPPPEVFPEDYDIDT--PPTNEKTKIGN 446 Query: 417 -VRRLRYNATVEIVFQSPVLAD---TYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLV 584 V + + V+++ Q+ + + +P HLHG D +VL G G++ AE++ ++ NL Sbjct: 447 GVYQFKIGEIVDVILQNANMMKENLSEIHPWHLHGHDFWVLGYGDGKFTAEEE-SSLNLK 505 Query: 585 DPPVRNTV 608 +PP+RNTV Sbjct: 506 NPPLRNTV 513
>LAC1_BOTCI (Q12570) Laccase (EC 1.10.3.2) (Benzenediol:oxygen oxidoreductase)| (Urishiol oxidase) (Diphenol oxidase) (Fragment) Length = 486 Score = 39.3 bits (90), Expect = 0.009 Identities = 18/40 (45%), Positives = 25/40 (62%) Frame = +3 Query: 489 NPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTV 608 +P+HLHG D + L+QG G Y A NLV+PP R+ + Sbjct: 370 HPIHLHGHDFWTLSQGTGAYTA---TTALNLVNPPRRDVL 406
>LAC2_TRAVI (Q99046) Laccase 2 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 519 Score = 35.4 bits (80), Expect = 0.13 Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 6/163 (3%) Frame = +3 Query: 138 HPLLR------PVPANVHEHLFYALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLL 299 HPL R P P V + L A + N INN +F P LL Sbjct: 326 HPLARMPVPGSPTPGGVDKALNLAFN------------FNGTNFFINNATFTPPTVPVLL 373 Query: 300 QAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRATSVRRLRYNATVEIVFQSPVLAD 479 Q +S T ++L A SV L ++T+EI + LA Sbjct: 374 QI-----LSGAQTAQDLLP-----------------AGSVYPLPAHSTIEITLPATALAP 411 Query: 480 TYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTV 608 +P HLHG F + + G TYN DP R+ V Sbjct: 412 GAPHPFHLHGH-AFAVVRSAGS-------TTYNYNDPIFRDVV 446
>LAC2_TRAVE (Q12718) Laccase 2 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) (Laccase I) Length = 519 Score = 35.4 bits (80), Expect = 0.13 Identities = 44/163 (26%), Positives = 58/163 (35%), Gaps = 6/163 (3%) Frame = +3 Query: 138 HPLLR------PVPANVHEHLFYALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLL 299 HPL R P P V + L A + N INN +F P LL Sbjct: 326 HPLARMPVPGSPTPGGVDKALNLAFN------------FNGTNFFINNATFTPPTVPVLL 373 Query: 300 QAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRATSVRRLRYNATVEIVFQSPVLAD 479 Q +S T ++L A SV L ++T+EI + LA Sbjct: 374 QI-----LSGAQTAQDLLP-----------------AGSVYPLPAHSTIEITLPATALAP 411 Query: 480 TYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTV 608 +P HLHG F + + G TYN DP R+ V Sbjct: 412 GAPHPFHLHGH-AFAVVRSAGS-------TTYNYNDPIFRDVV 446
>SDK2_HUMAN (Q58EX2) Protein sidekick-2 precursor| Length = 2170 Score = 33.9 bits (76), Expect = 0.38 Identities = 18/66 (27%), Positives = 34/66 (51%) Frame = +3 Query: 186 YALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAP 365 +AL S ++ + S ++ L P + FR+ AT + + + S++TL+ PD AP Sbjct: 1445 WALHSASVSHNASSFIVDRLKPF-TSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAP 1503 Query: 366 RMFNFT 383 + + T Sbjct: 1504 TILSVT 1509
>SDK2_MOUSE (Q6V4S5) Protein sidekick-2 precursor| Length = 2176 Score = 32.7 bits (73), Expect = 0.85 Identities = 17/66 (25%), Positives = 34/66 (51%) Frame = +3 Query: 186 YALDSGNLCPHGESSCINHLGPMINNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAP 365 +AL S ++ + + ++ L P + FR+ AT + + + S++TL+ PD AP Sbjct: 1451 WALHSASVSHNASAFTVDRLKPF-TSYKFRVKATNDIGDSEFSEESESLTTLQAAPDEAP 1509 Query: 366 RMFNFT 383 + + T Sbjct: 1510 TILSVT 1515
>MOL2B_HUMAN (Q86TA1) Mps one binder kinase activator-like 2B (Mob1 homolog 2b)| (Protein Mob3B) Length = 216 Score = 30.0 bits (66), Expect = 5.5 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 359 GTQDV*LHQNAQADVQSDVGEKAAVQCHGGD 451 GTQ LH+ AQA + S V KAAVQ G+ Sbjct: 24 GTQRFELHKRAQASLNSGVDLKAAVQLPSGE 54
>LAC1_TRAHI (Q02497) Laccase precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Ligninolytic phenoloxidase) Length = 520 Score = 30.0 bits (66), Expect = 5.5 Identities = 33/118 (27%), Positives = 45/118 (38%) Frame = +3 Query: 255 INNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRATSVRRLRY 434 IN SF +P T P+L + IS + D P + SV L Sbjct: 360 INGASF-VPPTVPVL-------LQIISGAQNAQDLLP--------------SGSVYSLPS 397 Query: 435 NATVEIVFQSPVLADTYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTV 608 NA +EI F + A +P HLHG F + + G YN +P R+ V Sbjct: 398 NADIEISFPATAAAPGAPHPFHLHGH-AFAVVRSAGS-------TVYNYDNPIFRDVV 447
>TREZ_BREHE (O52520) Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)| (MTHase) (4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase) (Maltooligosyl trehalose trehalohydrolase) Length = 589 Score = 30.0 bits (66), Expect = 5.5 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = +3 Query: 24 PGKEEHDTTSSIMVPEMPDRHDSDTSFYFHGNLTSLQPHPLLRPVPANVHEH 179 PG E T S + P D D + GN T + P P R +PA VH H Sbjct: 39 PGSEGWWTAS-----DAPPNGDVDYGYLLDGNTTPV-PEPRSRRLPAGVHNH 84
>2A5B_HUMAN (Q15173) Serine/threonine-protein phosphatase 2A 56 kDa regulatory| subunit beta isoform (PP2A, B subunit, B' beta isoform) (PP2A, B subunit, B56 beta isoform) (PP2A, B subunit, PR61 beta isoform) (PP2A, B subunit, R5 beta isoform) Length = 497 Score = 29.6 bits (65), Expect = 7.2 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = +3 Query: 75 PDRHDSDTSFYFHGNLTSLQPHPLLRPVPAN-VHEHL 182 P R S + F + N L P PLL+ VPA+ +HE L Sbjct: 41 PRRSHSSSQFRYQSNQQELTPLPLLKDVPASELHELL 77
>LAC1_MELAO (Q70KY3) Laccase-1 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Ligninolytic phenoloxidase) Length = 623 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 9/48 (18%) Frame = +3 Query: 489 NPMHLHGQDMFVL---------AQGLGRYDAEKDVATYNLVDPPVRNT 605 +PMHLHG D VL +Q +D D+A N +PP R+T Sbjct: 481 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDT 528
>LAC1_TRAVI (Q99044) Laccase 1 precursor (EC 1.10.3.2) (Benzenediol:oxygen| oxidoreductase) (Urishiol oxidase) (Diphenol oxidase) Length = 520 Score = 29.6 bits (65), Expect = 7.2 Identities = 33/118 (27%), Positives = 42/118 (35%) Frame = +3 Query: 255 INNVSFRLPATTPLLQAHYHGNMSSISTLRELPDRAPRMFNFTKMRKPTSRATSVRRLRY 434 IN SF P LLQ IS + D P + SV L Sbjct: 360 INGTSFTPPTVPVLLQI--------ISGAQNAQDLLP--------------SGSVYSLPS 397 Query: 435 NATVEIVFQSPVLADTYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDPPVRNTV 608 NA +EI F + A +P HLHG F + + G YN +P R+ V Sbjct: 398 NADIEISFPATAAAPGAPHPFHLHGH-AFAVVRSAGS-------TVYNYDNPIFRDVV 447
>VMSA_HBVIA (P24025) Major surface antigen precursor| Length = 388 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -2 Query: 483 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 391 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCRTCTTPAQGTSMYPSCC 300
>ITA1_RAT (P18614) Integrin alpha-1 precursor (Laminin and collagen receptor)| (VLA-1) (CD49a antigen) Length = 1180 Score = 29.6 bits (65), Expect = 7.2 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Frame = +3 Query: 72 MPDRHDSDTSFY--FHGNLTSLQPHPLLRP-VPANVHEHLFYALDSGNLCPHGESSCINH 242 M D+HD S NLT + P+L +P +VHEH+ +A D GN + CI+ Sbjct: 762 MLDKHDFQDSVRVTLDFNLTDPENGPVLDDALPNSVHEHIPFAKDCGN-----KERCISD 816 Query: 243 L 245 L Sbjct: 817 L 817
>VL2_HPV16 (P03107) Minor capsid protein L2| Length = 473 Score = 29.3 bits (64), Expect = 9.4 Identities = 18/58 (31%), Positives = 26/58 (44%) Frame = +3 Query: 45 TTSSIMVPEMPDRHDSDTSFYFHGNLTSLQPHPLLRPVPANVHEHLFYALDSGNLCPH 218 TTS+ P + D +++ T+ H N T P L P PA H + L S + H Sbjct: 136 TTSTDTTPAILDINNTVTTVTTHNNPTFTDPSVLQPPTPAETGGH--FTLSSSTISTH 191
>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP1 Length = 3596 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +3 Query: 432 YNATVEIVFQSPVLADTYANPMHLHGQDMFVLAQGLGRYDAEKDV 566 +N T V+ ++ ++ ANP+ +H D V A G+ + EKD+ Sbjct: 2040 WNKTTGDVWYDIIMPESAANPLAVHDLDSAVAAIGMSKEIPEKDM 2084
>POU1_DUGJA (P31370) POU domain protein 1 (DjPOU1)| Length = 559 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%) Frame = +3 Query: 234 INHLGPMINNVSFRLPATTPLLQAHYHG--NMSSISTLRELPDR--APRMFN 377 ++H+G N++ + PL+ + Y+ N S+IS+ LP R AP +FN Sbjct: 4 VSHIGSSHFNINSSIKTALPLINSQYNSLVNESTISSNINLPFRLDAPSLFN 55
>MAK1_SCHPO (Q9P7Q7) Peroxide stress-activated histidine kinase mak1 (EC| 2.7.13.3) (Mcs4-associated kinase 1) (His-Asp phosphorelay kinase phk3) Length = 1639 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Frame = +3 Query: 165 NVHEHLFYALDSGNLCPHGESSC------INHLGPMINNVSFRLPATTPLLQAHYHGNMS 326 N E A + CPH E C IN G +NN+ +LP P+ + N Sbjct: 578 NTKELSMSASSENSDCPHKEGECVGSFCNINAKGSSLNNIP-KLPRFVPVPSEFFKKNQR 636 Query: 327 SISTLRE 347 S TL++ Sbjct: 637 SWVTLKK 643
>FIO1_SCHPO (Q09920) Iron transport multicopper oxidase fio1 precursor (EC| 1.-.-.-) Length = 622 Score = 29.3 bits (64), Expect = 9.4 Identities = 17/63 (26%), Positives = 27/63 (42%) Frame = +3 Query: 411 TSVRRLRYNATVEIVFQSPVLADTYANPMHLHGQDMFVLAQGLGRYDAEKDVATYNLVDP 590 T+ Y V+++ + DT +P HLHG VL +G D ++ D Sbjct: 394 TNAYIFEYGDVVDVIIDNH---DTGKHPFHLHGHTFQVLERGEENAGLYSDQESHTYYDN 450 Query: 591 PVR 599 P+R Sbjct: 451 PMR 453
>VMSA_HBVWO (P17399) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -2 Query: 483 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 391 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300
>VMSA_HBVWJ (P17398) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -2 Query: 483 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 391 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300
>VMSA_HBVWI (P17397) Major surface antigen precursor| Length = 388 Score = 29.3 bits (64), Expect = 9.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = -2 Query: 483 MCPLAPGSGTRS--PPWHCTAAFSPTSLWTSAC 391 +CPL PGS T S P CT TS++ S C Sbjct: 268 VCPLIPGSSTTSTGPCKTCTTPAQGTSMFPSCC 300 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,617,671 Number of Sequences: 219361 Number of extensions: 1968003 Number of successful extensions: 5158 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4944 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5155 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
