| Clone Name | bags19n15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482753.1| Oryza sativa (japonica cultivar-group), mRNA Length = 920 Score = 519 bits (262), Expect = e-144 Identities = 454/518 (87%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 138 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 197 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 198 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 257 Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289 ||||||||||||| | |||||| | ||||| |||||||| ||| ||||||| |||| | Sbjct: 258 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 317 Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349 ||||||| | || ||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 318 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 377 Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409 ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||||| Sbjct: 378 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 437 Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 438 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 497 Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529 ||||||| ||||||| || || || ||||| ||||||||| ||||||||| ||||| | Sbjct: 498 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 557 Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589 || | || || ||| || |||||||| || ||||||||||| |||||||||||| ||| Sbjct: 558 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 617 Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627 | |||||||||||||||||| |||||||||||||||| Sbjct: 618 atgaggatttcgaaatggccaattttgatgatgtgaaa 655
>ref|XM_507254.1| PREDICTED Oryza sativa (japonica cultivar-group), B1144B06.21 mRNA Length = 992 Score = 519 bits (262), Expect = e-144 Identities = 454/518 (87%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 198 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 257 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 258 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 317 Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289 ||||||||||||| | |||||| | ||||| |||||||| ||| ||||||| |||| | Sbjct: 318 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 377 Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349 ||||||| | || ||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 378 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 437 Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409 ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||||| Sbjct: 438 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 497 Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 498 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 557 Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529 ||||||| ||||||| || || || ||||| ||||||||| ||||||||| ||||| | Sbjct: 558 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 617 Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589 || | || || ||| || |||||||| || ||||||||||| |||||||||||| ||| Sbjct: 618 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 677 Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627 | |||||||||||||||||| |||||||||||||||| Sbjct: 678 atgaggatttcgaaatggccaattttgatgatgtgaaa 715
>dbj|AK099156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067L05, full insert sequence Length = 920 Score = 519 bits (262), Expect = e-144 Identities = 454/518 (87%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 138 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 197 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 198 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 257 Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289 ||||||||||||| | |||||| | ||||| |||||||| ||| ||||||| |||| | Sbjct: 258 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 317 Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349 ||||||| | || ||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 318 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 377 Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409 ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||||| Sbjct: 378 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 437 Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 438 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 497 Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529 ||||||| ||||||| || || || ||||| ||||||||| ||||||||| ||||| | Sbjct: 498 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 557 Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589 || | || || ||| || |||||||| || ||||||||||| |||||||||||| ||| Sbjct: 558 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 617 Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627 | |||||||||||||||||| |||||||||||||||| Sbjct: 618 atgaggatttcgaaatggccaattttgatgatgtgaaa 655
>dbj|AK061573.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G01, full insert sequence Length = 992 Score = 519 bits (262), Expect = e-144 Identities = 454/518 (87%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 198 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 257 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 258 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 317 Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289 ||||||||||||| | |||||| | ||||| |||||||| ||| ||||||| |||| | Sbjct: 318 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 377 Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349 ||||||| | || ||||| ||||| || |||||||| ||||| |||||||||||||||| Sbjct: 378 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 437 Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409 ||||||||||||||||||||||||| ||||| |||||||||||||| || || ||||||| Sbjct: 438 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 497 Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469 ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||| Sbjct: 498 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 557 Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529 ||||||| ||||||| || || || ||||| ||||||||| ||||||||| ||||| | Sbjct: 558 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 617 Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589 || | || || ||| || |||||||| || ||||||||||| |||||||||||| ||| Sbjct: 618 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 677 Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627 | |||||||||||||||||| |||||||||||||||| Sbjct: 678 atgaggatttcgaaatggccaattttgatgatgtgaaa 715
>gb|AY105251.1| Zea mays PCO080180 mRNA sequence Length = 947 Score = 424 bits (214), Expect = e-115 Identities = 427/498 (85%) Strand = Plus / Plus Query: 112 gagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcggc 171 ||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 162 gagatgacggcgacggaggtggctgcgctgctggatctgaagccgcacccggagggcggc 221 Query: 172 tactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgccg 231 | |||| ||||||||||||||||| |||| || | ||| |||| ||||||||||||| Sbjct: 222 ttctacaccgagaccttccgcgacggctccatcacgctcaccacgtcccagctcccgccc 281 Query: 232 cagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagt 291 || |||||||| |||||||| |||||||| || |||||| | ||||| ||||| ||| Sbjct: 282 cactacaaggtaaaccgtgctgttagcaccgcaatttatttcctacttcccgcagggagt 341 Query: 292 gtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcct 351 ||||| ||||| || || ||||| || |||||||||||||| |||||||||||||||||| Sbjct: 342 gtttcccgtctccaccgcattccctgtgctgaaacctggcacttctacaagggagagcct 401 Query: 352 ctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacac 411 ||||||||||| ||||| |||||||| || ||||||||||| || || ||||| |||||| Sbjct: 402 ctcacggtcttcgagcttcacgacgacggtcacattgaccttactgtcattggcccacac 461 Query: 412 ctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttc 471 || || || ||||||||||||||||| ||||||||||| || ||||||||||| || ||| Sbjct: 462 cttgaggcaggccagcgcccccagtataccgtgccaccgaacgtgtggtttgggtcgttc 521 Query: 472 cctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaag 531 || || | || ||||||||||| ||||| ||||||||| ||||||||| ||||||||| Sbjct: 522 cccacactagacgtcgagtcgttcgcatctgatggcagcgttcttgtcaagtctcggaag 581 Query: 532 cgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtac 591 | ||||| ||| ||| |||||||| || |||||||| || |||||||||||| ||||| Sbjct: 582 agggaccctgagctgcattactcccttgttggctgcacctgtgcccctggcttccagtac 641 Query: 592 gaggatttcgaaatggcc 609 |||||||| ||||||||| Sbjct: 642 gaggattttgaaatggcc 659
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 260 bits (131), Expect = 5e-66 Identities = 236/271 (87%) Strand = Plus / Plus Query: 357 ggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacacctgga 416 |||||||||||||||||| ||||| |||||||||||||| || || |||||||||||||| Sbjct: 22353227 ggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccacacctgga 22353286 Query: 417 cgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttccctac 476 ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 22353287 ggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctttccctac 22353346 Query: 477 gttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaagcgaga 536 ||||||| || || || ||||| ||||||||| ||||||||| ||||| ||| | || Sbjct: 22353347 cctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaaagaggga 22353406 Query: 537 ccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtacgagga 596 || ||| || |||||||| || ||||||||||| |||||||||||| |||| ||||| Sbjct: 22353407 tcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagtatgagga 22353466 Query: 597 tttcgaaatggcctcttttgatgatgtgaaa 627 ||||||||||||| |||||||||||||||| Sbjct: 22353467 tttcgaaatggccaattttgatgatgtgaaa 22353497 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 22351428 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 22351487 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 22351488 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 22351547 Query: 230 cgcagt 235 |||||| Sbjct: 22351548 cgcagt 22351553 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 247 cgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagtgtttcacgtctgcat 306 |||||| | ||||| |||||||| ||| ||||||| |||| |||||||| | || ||| Sbjct: 22353002 cgtgctatcagcactgctatctacttcctgcttccatcagggagtgtttctcacctccat 22353061 Query: 307 cgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggt 359 || ||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 22353062 cgcattccctgtgctgaaacatggcacttctacaagggagagcctctcacggt 22353114
>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1144B06 Length = 133689 Score = 260 bits (131), Expect = 5e-66 Identities = 236/271 (87%) Strand = Plus / Plus Query: 357 ggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacacctgga 416 |||||||||||||||||| ||||| |||||||||||||| || || |||||||||||||| Sbjct: 50210 ggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccacacctgga 50269 Query: 417 cgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttccctac 476 ||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 50270 ggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctttccctac 50329 Query: 477 gttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaagcgaga 536 ||||||| || || || ||||| ||||||||| ||||||||| ||||| ||| | || Sbjct: 50330 cctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaaagaggga 50389 Query: 537 ccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtacgagga 596 || ||| || |||||||| || ||||||||||| |||||||||||| |||| ||||| Sbjct: 50390 tcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagtatgagga 50449 Query: 597 tttcgaaatggcctcttttgatgatgtgaaa 627 ||||||||||||| |||||||||||||||| Sbjct: 50450 tttcgaaatggccaattttgatgatgtgaaa 50480 Score = 178 bits (90), Expect = 1e-41 Identities = 117/126 (92%) Strand = Plus / Plus Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 48411 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 48470 Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229 |||||||| ||||||| ||||||||| |||||||||| || ||||||| |||||||||| Sbjct: 48471 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 48530 Query: 230 cgcagt 235 |||||| Sbjct: 48531 cgcagt 48536 Score = 89.7 bits (45), Expect = 1e-14 Identities = 96/113 (84%) Strand = Plus / Plus Query: 247 cgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagtgtttcacgtctgcat 306 |||||| | ||||| |||||||| ||| ||||||| |||| |||||||| | || ||| Sbjct: 49985 cgtgctatcagcactgctatctacttcctgcttccatcagggagtgtttctcacctccat 50044 Query: 307 cgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggt 359 || ||||| || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 50045 cgcattccctgtgctgaaacatggcacttctacaagggagagcctctcacggt 50097
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 140 tgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgactcct 199 ||||||||||| ||| ||||| || ||||||| |||| ||||||||||||||| ||| Sbjct: 5015515 tgctggatctgcagcgccaccccgacggcggcttctacctggagaccttccgcgacccct 5015456 Query: 200 ccgtctccctc 210 || |||||||| Sbjct: 5015455 ccatctccctc 5015445 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 302 tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360 ||||||| || ||||| ||||| |||||||| | ||||| ||| || |||||||||||| Sbjct: 5016976 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 5016918 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 181 gagaccttccgcgactcctccgtctccctc 210 ||||||||||||||| ||||| |||||||| Sbjct: 5018754 gagaccttccgcgacccctccatctccctc 5018725 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 313 ccttgcgctgaaacctggcatttctacaagggagagcctctcacggtct 361 ||||| ||||| |||||||| | ||||| ||| || ||||||||||||| Sbjct: 5013820 ccttgtgctgagacctggcactactacatgggggaacctctcacggtct 5013772
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 54.0 bits (27), Expect = 6e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 140 tgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgactcct 199 ||||||||||| ||| ||||| || ||||||| |||| ||||||||||||||| ||| Sbjct: 57629 tgctggatctgcagcgccaccccgacggcggcttctacctggagaccttccgcgacccct 57570 Query: 200 ccgtctccctc 210 || |||||||| Sbjct: 57569 ccatctccctc 57559 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Minus Query: 302 tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360 ||||||| || ||||| ||||| |||||||| | ||||| ||| || |||||||||||| Sbjct: 59090 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 59032 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Minus Query: 181 gagaccttccgcgactcctccgtctccctc 210 ||||||||||||||| ||||| |||||||| Sbjct: 60868 gagaccttccgcgacccctccatctccctc 60839 Score = 42.1 bits (21), Expect = 2.2 Identities = 42/49 (85%) Strand = Plus / Minus Query: 313 ccttgcgctgaaacctggcatttctacaagggagagcctctcacggtct 361 ||||| ||||| |||||||| | ||||| ||| || ||||||||||||| Sbjct: 55934 ccttgtgctgagacctggcactactacatgggggaacctctcacggtct 55886
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 48.1 bits (24), Expect = 0.035 Identities = 42/48 (87%) Strand = Plus / Plus Query: 148 ctgaagccgcacccggagggcggctactacgccgagaccttccgcgac 195 ||||||||||| ||||| ||||||| ||||| |||||||| |||||| Sbjct: 2861230 ctgaagccgcatccggaaggcggctggtacgcggagacctttcgcgac 2861277
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 197 cctccgtctccctcgccaccgcc 219 ||||||||||||||||||||||| Sbjct: 58174 cctccgtctccctcgccaccgcc 58152
>dbj|AK070593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058D05, full insert sequence Length = 2512 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 302 tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360 ||||||| || ||||| ||||| |||||||| | ||||| ||| || |||||||||||| Sbjct: 1900 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 1958 Score = 44.1 bits (22), Expect = 0.55 Identities = 28/30 (93%) Strand = Plus / Plus Query: 181 gagaccttccgcgactcctccgtctccctc 210 ||||||||||||||| ||||| |||||||| Sbjct: 122 gagaccttccgcgacccctccatctccctc 151
>ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1902 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tggcagccatcttgtcaactct 525 |||||||||||||||||||||| Sbjct: 957 tggcagccatcttgtcaactct 978
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence Length = 172435 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tggcagccatcttgtcaactct 525 |||||||||||||||||||||| Sbjct: 98101 tggcagccatcttgtcaactct 98122
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tggcagccatcttgtcaactct 525 |||||||||||||||||||||| Sbjct: 16568868 tggcagccatcttgtcaactct 16568889
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.55 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 cgtctccctcgccaccgcccagctcc 226 |||||||||||||||||||| ||||| Sbjct: 5401527 cgtctccctcgccaccgccctgctcc 5401552
>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full insert sequence Length = 2291 Score = 44.1 bits (22), Expect = 0.55 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tggcagccatcttgtcaactct 525 |||||||||||||||||||||| Sbjct: 958 tggcagccatcttgtcaactct 979
>gb|AC082648.6| Homo sapiens BAC clone CTD-2057N4 from 7, complete sequence Length = 50485 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ttcttgcttcctgcaggaagt 291 ||||||||||||||||||||| Sbjct: 11158 ttcttgcttcctgcaggaagt 11138
>gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, complete sequence Length = 157848 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ttcttgcttcctgcaggaagt 291 ||||||||||||||||||||| Sbjct: 10915 ttcttgcttcctgcaggaagt 10895
>gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromosome 7, complete sequence Length = 164152 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 ttcttgcttcctgcaggaagt 291 ||||||||||||||||||||| Sbjct: 16711 ttcttgcttcctgcaggaagt 16691
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tccgcgactcctccgtctcc 207 |||||||||||||||||||| Sbjct: 31522 tccgcgactcctccgtctcc 31503
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tccgcgactcctccgtctcc 207 |||||||||||||||||||| Sbjct: 18813 tccgcgactcctccgtctcc 18794
>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10, complete sequence Length = 196999 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 aggatttcgaaatggcctct 612 |||||||||||||||||||| Sbjct: 84424 aggatttcgaaatggcctct 84443
>gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome 13, complete sequence Length = 171737 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 ggatggcagccatcttgtca 520 |||||||||||||||||||| Sbjct: 99525 ggatggcagccatcttgtca 99544
>emb|CR726406.2|CNS0GNFW Tetraodon nigroviridis full-length cDNA Length = 1099 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggtagcggcgctgctggatc 148 |||||||||||||||||||| Sbjct: 411 ggtagcggcgctgctggatc 392
>emb|CR725253.2|CNS0GMJV Tetraodon nigroviridis full-length cDNA Length = 1111 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggtagcggcgctgctggatc 148 |||||||||||||||||||| Sbjct: 422 ggtagcggcgctgctggatc 403
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 8.6 Identities = 50/60 (83%) Strand = Plus / Minus Query: 136 gcgctgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgac 195 |||| ||||| ||| || ||||||||||| |||||| |||| ||||||||| |||||| Sbjct: 515066 gcgcggctgggtctcaaaccgcacccggaaggcggccactatcgcgagacctttcgcgac 515007
>ref|XM_789318.1| PREDICTED: Strongylocentrotus purpuratus similar to Est1p-like protein A (LOC589683), partial mRNA Length = 4816 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 328 tggcatttctacaagggaga 347 |||||||||||||||||||| Sbjct: 3021 tggcatttctacaagggaga 3040
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 atccagaggaggagatgggc 105 |||||||||||||||||||| Sbjct: 92462 atccagaggaggagatgggc 92481
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 tctgaagccgcacccggagggcgg 170 |||| ||||||||||||||||||| Sbjct: 330111 tctgcagccgcacccggagggcgg 330134
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 8.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 207 cctcgccaccgcccagctcccgccgcag 234 ||||||||||||| || ||||||||||| Sbjct: 290137 cctcgccaccgccgagatcccgccgcag 290110
>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence Length = 185980 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 cacctggacgctggccagcgcccc 432 ||||||||||||||||| |||||| Sbjct: 63224 cacctggacgctggccaccgcccc 63201
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 216 cgcccagctcccgccgcagt 235 |||||||||||||||||||| Sbjct: 3958642 cgcccagctcccgccgcagt 3958623
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 tccgcgactcctccgtctcc 207 |||||||||||||||||||| Sbjct: 28603730 tccgcgactcctccgtctcc 28603711
>gb|AC079117.6| Homo sapiens BAC clone RP11-122D13 from 2, complete sequence Length = 160324 Score = 40.1 bits (20), Expect = 8.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgcaggaagtgtttcacgtctgc 304 ||||||||||||| |||||||||| Sbjct: 142130 ctgcaggaagtgtatcacgtctgc 142153
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggatctgaagccgcacccgg 163 |||||||||||||||||||| Sbjct: 4201148 ggatctgaagccgcacccgg 4201129
>dbj|AK068594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154G15, full insert sequence Length = 1948 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 tccgcgactcctccgtctcc 207 |||||||||||||||||||| Sbjct: 276 tccgcgactcctccgtctcc 295
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 8.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 412 ctggacgctggccagcgccc 431 |||||||||||||||||||| Sbjct: 4301052 ctggacgctggccagcgccc 4301071 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,736,618 Number of Sequences: 3902068 Number of extensions: 3736618 Number of successful extensions: 71997 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71438 Number of HSP's gapped (non-prelim): 552 length of query: 628 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 605 effective length of database: 17,143,297,704 effective search space: 10371695110920 effective search space used: 10371695110920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)