ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19n15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_482753.1| Oryza sativa (japonica cultivar-group), mRNA 519 e-144
2ref|XM_507254.1| PREDICTED Oryza sativa (japonica cultivar-group... 519 e-144
3dbj|AK099156.1| Oryza sativa (japonica cultivar-group) cDNA clon... 519 e-144
4dbj|AK061573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 519 e-144
5gb|AY105251.1| Zea mays PCO080180 mRNA sequence 424 e-115
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 260 5e-66
7dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic D... 260 5e-66
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
9dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
10dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 48 0.035
11gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, comple... 46 0.14
12dbj|AK070593.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
13ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predic... 44 0.55
14emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 44 0.55
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
16dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.55
17dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.55
18gb|AC082648.6| Homo sapiens BAC clone CTD-2057N4 from 7, complet... 42 2.2
19gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, comple... 42 2.2
20gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromoso... 42 2.2
21gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
22gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
23emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 ... 40 8.6
24gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome... 40 8.6
25emb|CR726406.2|CNS0GNFW Tetraodon nigroviridis full-length cDNA 40 8.6
26emb|CR725253.2|CNS0GMJV Tetraodon nigroviridis full-length cDNA 40 8.6
27gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 8.6
28ref|XM_789318.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 8.6
29emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J... 40 8.6
30emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.6
31emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 8.6
32gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, co... 40 8.6
33gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.6
34dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
35gb|AC079117.6| Homo sapiens BAC clone RP11-122D13 from 2, comple... 40 8.6
36dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 8.6
37dbj|AK068594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.6
38gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 8.6

>ref|XM_482753.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 920

 Score =  519 bits (262), Expect = e-144
 Identities = 454/518 (87%)
 Strand = Plus / Plus

                                                                       
Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 197

                                                                       
Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
           |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 198 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 257

                                                                       
Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289
           ||||||||||||| |  |||||| | ||||| |||||||| ||| |||||||  |||| |
Sbjct: 258 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 317

                                                                       
Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349
           ||||||| |  || ||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 318 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 377

                                                                       
Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409
           ||||||||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct: 378 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 437

                                                                       
Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469
           ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 438 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 497

                                                                       
Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529
           |||||||  ||||||| || || || ||||| |||||||||  ||||||||| ||||| |
Sbjct: 498 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 557

                                                                       
Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589
           || | || || |||   || |||||||| || ||||||||||| |||||||||||| |||
Sbjct: 558 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 617

                                                 
Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627
           | ||||||||||||||||||  ||||||||||||||||
Sbjct: 618 atgaggatttcgaaatggccaattttgatgatgtgaaa 655



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>ref|XM_507254.1| PREDICTED Oryza sativa (japonica cultivar-group), B1144B06.21 mRNA
          Length = 992

 Score =  519 bits (262), Expect = e-144
 Identities = 454/518 (87%)
 Strand = Plus / Plus

                                                                       
Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 257

                                                                       
Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
           |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 258 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 317

                                                                       
Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289
           ||||||||||||| |  |||||| | ||||| |||||||| ||| |||||||  |||| |
Sbjct: 318 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 377

                                                                       
Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349
           ||||||| |  || ||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 378 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 437

                                                                       
Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409
           ||||||||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct: 438 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 497

                                                                       
Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469
           ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 498 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 557

                                                                       
Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529
           |||||||  ||||||| || || || ||||| |||||||||  ||||||||| ||||| |
Sbjct: 558 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 617

                                                                       
Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589
           || | || || |||   || |||||||| || ||||||||||| |||||||||||| |||
Sbjct: 618 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 677

                                                 
Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627
           | ||||||||||||||||||  ||||||||||||||||
Sbjct: 678 atgaggatttcgaaatggccaattttgatgatgtgaaa 715



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>dbj|AK099156.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067L05, full
           insert sequence
          Length = 920

 Score =  519 bits (262), Expect = e-144
 Identities = 454/518 (87%)
 Strand = Plus / Plus

                                                                       
Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 138 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 197

                                                                       
Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
           |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 198 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 257

                                                                       
Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289
           ||||||||||||| |  |||||| | ||||| |||||||| ||| |||||||  |||| |
Sbjct: 258 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 317

                                                                       
Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349
           ||||||| |  || ||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 318 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 377

                                                                       
Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409
           ||||||||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct: 378 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 437

                                                                       
Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469
           ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 438 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 497

                                                                       
Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529
           |||||||  ||||||| || || || ||||| |||||||||  ||||||||| ||||| |
Sbjct: 498 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 557

                                                                       
Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589
           || | || || |||   || |||||||| || ||||||||||| |||||||||||| |||
Sbjct: 558 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 617

                                                 
Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627
           | ||||||||||||||||||  ||||||||||||||||
Sbjct: 618 atgaggatttcgaaatggccaattttgatgatgtgaaa 655



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>dbj|AK061573.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G01, full
           insert sequence
          Length = 992

 Score =  519 bits (262), Expect = e-144
 Identities = 454/518 (87%)
 Strand = Plus / Plus

                                                                       
Query: 110 gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 198 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 257

                                                                       
Query: 170 gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
           |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 258 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 317

                                                                       
Query: 230 cgcagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaa 289
           ||||||||||||| |  |||||| | ||||| |||||||| ||| |||||||  |||| |
Sbjct: 318 cgcagtacaaggtcgaccgtgctatcagcactgctatctacttcctgcttccatcaggga 377

                                                                       
Query: 290 gtgtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagc 349
           ||||||| |  || ||||| ||||| || |||||||| ||||| ||||||||||||||||
Sbjct: 378 gtgtttctcacctccatcgcattccctgtgctgaaacatggcacttctacaagggagagc 437

                                                                       
Query: 350 ctctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccac 409
           ||||||||||||||||||||||||| ||||| |||||||||||||| || || |||||||
Sbjct: 438 ctctcacggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccac 497

                                                                       
Query: 410 acctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctt 469
           ||||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct: 498 acctggaggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctt 557

                                                                       
Query: 470 tccctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcgga 529
           |||||||  ||||||| || || || ||||| |||||||||  ||||||||| ||||| |
Sbjct: 558 tccctaccctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaa 617

                                                                       
Query: 530 agcgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagt 589
           || | || || |||   || |||||||| || ||||||||||| |||||||||||| |||
Sbjct: 618 agagggatcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagt 677

                                                 
Query: 590 acgaggatttcgaaatggcctcttttgatgatgtgaaa 627
           | ||||||||||||||||||  ||||||||||||||||
Sbjct: 678 atgaggatttcgaaatggccaattttgatgatgtgaaa 715



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>gb|AY105251.1| Zea mays PCO080180 mRNA sequence
          Length = 947

 Score =  424 bits (214), Expect = e-115
 Identities = 427/498 (85%)
 Strand = Plus / Plus

                                                                       
Query: 112 gagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcggc 171
           ||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 162 gagatgacggcgacggaggtggctgcgctgctggatctgaagccgcacccggagggcggc 221

                                                                       
Query: 172 tactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgccg 231
           | |||| |||||||||||||||||  |||| || | ||| ||||  ||||||||||||| 
Sbjct: 222 ttctacaccgagaccttccgcgacggctccatcacgctcaccacgtcccagctcccgccc 281

                                                                       
Query: 232 cagtacaaggttgggcgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagt 291
           || ||||||||    |||||||| |||||||| || |||||| | ||||| ||||| |||
Sbjct: 282 cactacaaggtaaaccgtgctgttagcaccgcaatttatttcctacttcccgcagggagt 341

                                                                       
Query: 292 gtttcacgtctgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcct 351
           ||||| ||||| || || ||||| || |||||||||||||| ||||||||||||||||||
Sbjct: 342 gtttcccgtctccaccgcattccctgtgctgaaacctggcacttctacaagggagagcct 401

                                                                       
Query: 352 ctcacggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacac 411
           ||||||||||| ||||| |||||||| || ||||||||||| || || ||||| ||||||
Sbjct: 402 ctcacggtcttcgagcttcacgacgacggtcacattgaccttactgtcattggcccacac 461

                                                                       
Query: 412 ctggacgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttc 471
           || || || ||||||||||||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 462 cttgaggcaggccagcgcccccagtataccgtgccaccgaacgtgtggtttgggtcgttc 521

                                                                       
Query: 472 cctacgttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaag 531
           || ||  | || ||||||||||| ||||| |||||||||  ||||||||| |||||||||
Sbjct: 522 cccacactagacgtcgagtcgttcgcatctgatggcagcgttcttgtcaagtctcggaag 581

                                                                       
Query: 532 cgagaccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtac 591
            | ||||| |||  ||| |||||||| || |||||||| || |||||||||||| |||||
Sbjct: 582 agggaccctgagctgcattactcccttgttggctgcacctgtgcccctggcttccagtac 641

                             
Query: 592 gaggatttcgaaatggcc 609
           |||||||| |||||||||
Sbjct: 642 gaggattttgaaatggcc 659



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  260 bits (131), Expect = 5e-66
 Identities = 236/271 (87%)
 Strand = Plus / Plus

                                                                            
Query: 357      ggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacacctgga 416
                |||||||||||||||||| ||||| |||||||||||||| || || ||||||||||||||
Sbjct: 22353227 ggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccacacctgga 22353286

                                                                            
Query: 417      cgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttccctac 476
                 ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 22353287 ggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctttccctac 22353346

                                                                            
Query: 477      gttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaagcgaga 536
                  ||||||| || || || ||||| |||||||||  ||||||||| ||||| ||| | ||
Sbjct: 22353347 cctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaaagaggga 22353406

                                                                            
Query: 537      ccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtacgagga 596
                 || |||   || |||||||| || ||||||||||| |||||||||||| |||| |||||
Sbjct: 22353407 tcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagtatgagga 22353466

                                               
Query: 597      tttcgaaatggcctcttttgatgatgtgaaa 627
                |||||||||||||  ||||||||||||||||
Sbjct: 22353467 tttcgaaatggccaattttgatgatgtgaaa 22353497



 Score =  178 bits (90), Expect = 1e-41
 Identities = 117/126 (92%)
 Strand = Plus / Plus

                                                                            
Query: 110      gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
                ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 22351428 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 22351487

                                                                            
Query: 170      gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
                |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 22351488 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 22351547

                      
Query: 230      cgcagt 235
                ||||||
Sbjct: 22351548 cgcagt 22351553



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                            
Query: 247      cgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagtgtttcacgtctgcat 306
                |||||| | ||||| |||||||| ||| |||||||  |||| |||||||| |  || |||
Sbjct: 22353002 cgtgctatcagcactgctatctacttcctgcttccatcagggagtgtttctcacctccat 22353061

                                                                     
Query: 307      cgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggt 359
                || ||||| || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 22353062 cgcattccctgtgctgaaacatggcacttctacaagggagagcctctcacggt 22353114



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>dbj|AP005483.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1144B06
          Length = 133689

 Score =  260 bits (131), Expect = 5e-66
 Identities = 236/271 (87%)
 Strand = Plus / Plus

                                                                         
Query: 357   ggtctttgagctacacgacgatggccacattgacctcaccgtaattggtccacacctgga 416
             |||||||||||||||||| ||||| |||||||||||||| || || ||||||||||||||
Sbjct: 50210 ggtctttgagctacacgatgatggacacattgacctcactgtcatcggtccacacctgga 50269

                                                                         
Query: 417   cgctggccagcgcccccagtacaccgtgccaccaaatgtgtggtttggttctttccctac 476
              ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 50270 ggctggccagcgtccccagtataccgtgccaccaaatgtgtggttcggttctttccctac 50329

                                                                         
Query: 477   gttggatgtcgagtcgtttgcatcggatggcagccatcttgtcaactctcggaagcgaga 536
               ||||||| || || || ||||| |||||||||  ||||||||| ||||| ||| | ||
Sbjct: 50330 cctggatgttgaatcattcgcatctgatggcagcgttcttgtcaagtctcgaaagaggga 50389

                                                                         
Query: 537   ccccgagaagcactactccctcgtcggctgcacttgcgcccctggcttcgagtacgagga 596
              || |||   || |||||||| || ||||||||||| |||||||||||| |||| |||||
Sbjct: 50390 tcctgagcttcattactccctagttggctgcacttgtgcccctggcttccagtatgagga 50449

                                            
Query: 597   tttcgaaatggcctcttttgatgatgtgaaa 627
             |||||||||||||  ||||||||||||||||
Sbjct: 50450 tttcgaaatggccaattttgatgatgtgaaa 50480



 Score =  178 bits (90), Expect = 1e-41
 Identities = 117/126 (92%)
 Strand = Plus / Plus

                                                                         
Query: 110   gcgagatgacggccacggaggtagcggcgctgctggatctgaagccgcacccggagggcg 169
             ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 48411 gcgagatgacggcgacggaggtggcggcgctgctggatctgaagccgcacccggagggcg 48470

                                                                         
Query: 170   gctactacgccgagaccttccgcgactcctccgtctccctcgccaccgcccagctcccgc 229
             |||||||| ||||||| |||||||||  |||||||||| || ||||||| ||||||||||
Sbjct: 48471 gctactacaccgagacgttccgcgacggctccgtctccgtcaccaccgcgcagctcccgc 48530

                   
Query: 230   cgcagt 235
             ||||||
Sbjct: 48531 cgcagt 48536



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 96/113 (84%)
 Strand = Plus / Plus

                                                                         
Query: 247   cgtgctgtgagcaccgctatctatttcttgcttcctgcaggaagtgtttcacgtctgcat 306
             |||||| | ||||| |||||||| ||| |||||||  |||| |||||||| |  || |||
Sbjct: 49985 cgtgctatcagcactgctatctacttcctgcttccatcagggagtgtttctcacctccat 50044

                                                                  
Query: 307   cgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggt 359
             || ||||| || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 50045 cgcattccctgtgctgaaacatggcacttctacaagggagagcctctcacggt 50097



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                           
Query: 140     tgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgactcct 199
               ||||||||||| |||  ||||| || ||||||| ||||   ||||||||||||||| |||
Sbjct: 5015515 tgctggatctgcagcgccaccccgacggcggcttctacctggagaccttccgcgacccct 5015456

                          
Query: 200     ccgtctccctc 210
               || ||||||||
Sbjct: 5015455 ccatctccctc 5015445



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                          
Query: 302     tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360
               ||||||| || ||||| ||||| |||||||| | ||||| ||| || ||||||||||||
Sbjct: 5016976 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 5016918



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 181     gagaccttccgcgactcctccgtctccctc 210
               ||||||||||||||| ||||| ||||||||
Sbjct: 5018754 gagaccttccgcgacccctccatctccctc 5018725



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                                
Query: 313     ccttgcgctgaaacctggcatttctacaagggagagcctctcacggtct 361
               ||||| ||||| |||||||| | ||||| ||| || |||||||||||||
Sbjct: 5013820 ccttgtgctgagacctggcactactacatgggggaacctctcacggtct 5013772



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>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1172G12
          Length = 171974

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                         
Query: 140   tgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgactcct 199
             ||||||||||| |||  ||||| || ||||||| ||||   ||||||||||||||| |||
Sbjct: 57629 tgctggatctgcagcgccaccccgacggcggcttctacctggagaccttccgcgacccct 57570

                        
Query: 200   ccgtctccctc 210
             || ||||||||
Sbjct: 57569 ccatctccctc 57559



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 302   tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360
             ||||||| || ||||| ||||| |||||||| | ||||| ||| || ||||||||||||
Sbjct: 59090 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 59032



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 181   gagaccttccgcgactcctccgtctccctc 210
             ||||||||||||||| ||||| ||||||||
Sbjct: 60868 gagaccttccgcgacccctccatctccctc 60839



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 313   ccttgcgctgaaacctggcatttctacaagggagagcctctcacggtct 361
             ||||| ||||| |||||||| | ||||| ||| || |||||||||||||
Sbjct: 55934 ccttgtgctgagacctggcactactacatgggggaacctctcacggtct 55886



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                               
Query: 148     ctgaagccgcacccggagggcggctactacgccgagaccttccgcgac 195
               ||||||||||| ||||| |||||||  ||||| |||||||| ||||||
Sbjct: 2861230 ctgaagccgcatccggaaggcggctggtacgcggagacctttcgcgac 2861277



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>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence
          Length = 118183

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 197   cctccgtctccctcgccaccgcc 219
             |||||||||||||||||||||||
Sbjct: 58174 cctccgtctccctcgccaccgcc 58152



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>dbj|AK070593.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023058D05, full
            insert sequence
          Length = 2512

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                       
Query: 302  tgcatcgtattccttgcgctgaaacctggcatttctacaagggagagcctctcacggtc 360
            ||||||| || ||||| ||||| |||||||| | ||||| ||| || ||||||||||||
Sbjct: 1900 tgcatcgcatcccttgtgctgagacctggcactactacatgggggaacctctcacggtc 1958



 Score = 44.1 bits (22), Expect = 0.55
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 181 gagaccttccgcgactcctccgtctccctc 210
           ||||||||||||||| ||||| ||||||||
Sbjct: 122 gagaccttccgcgacccctccatctccctc 151



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>ref|XM_472010.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1902

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 504 tggcagccatcttgtcaactct 525
           ||||||||||||||||||||||
Sbjct: 957 tggcagccatcttgtcaactct 978



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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 504   tggcagccatcttgtcaactct 525
             ||||||||||||||||||||||
Sbjct: 98101 tggcagccatcttgtcaactct 98122



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 504      tggcagccatcttgtcaactct 525
                ||||||||||||||||||||||
Sbjct: 16568868 tggcagccatcttgtcaactct 16568889



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 201     cgtctccctcgccaccgcccagctcc 226
               |||||||||||||||||||| |||||
Sbjct: 5401527 cgtctccctcgccaccgccctgctcc 5401552



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>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full
           insert sequence
          Length = 2291

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 504 tggcagccatcttgtcaactct 525
           ||||||||||||||||||||||
Sbjct: 958 tggcagccatcttgtcaactct 979



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>gb|AC082648.6| Homo sapiens BAC clone CTD-2057N4 from 7, complete sequence
          Length = 50485

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ttcttgcttcctgcaggaagt 291
             |||||||||||||||||||||
Sbjct: 11158 ttcttgcttcctgcaggaagt 11138



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>gb|AC079763.7| Homo sapiens BAC clone RP11-153N17 from 7, complete sequence
          Length = 157848

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ttcttgcttcctgcaggaagt 291
             |||||||||||||||||||||
Sbjct: 10915 ttcttgcttcctgcaggaagt 10895



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>gb|AC146446.3| Pan troglodytes BAC clone RP43-5P22 from chromosome 7, complete
             sequence
          Length = 164152

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   ttcttgcttcctgcaggaagt 291
             |||||||||||||||||||||
Sbjct: 16711 ttcttgcttcctgcaggaagt 16691



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>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017N18, complete sequence
          Length = 156643

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tccgcgactcctccgtctcc 207
             ||||||||||||||||||||
Sbjct: 31522 tccgcgactcctccgtctcc 31503



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>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I,
             complete sequence
          Length = 99587

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   tccgcgactcctccgtctcc 207
             ||||||||||||||||||||
Sbjct: 18813 tccgcgactcctccgtctcc 18794



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>emb|BX571802.15| Zebrafish DNA sequence from clone CH211-197A16 in linkage group 10,
             complete sequence
          Length = 196999

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   aggatttcgaaatggcctct 612
             ||||||||||||||||||||
Sbjct: 84424 aggatttcgaaatggcctct 84443



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>gb|AC122379.4| Mus musculus BAC clone RP23-476A7 from chromosome 13, complete sequence
          Length = 171737

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 501   ggatggcagccatcttgtca 520
             ||||||||||||||||||||
Sbjct: 99525 ggatggcagccatcttgtca 99544



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>emb|CR726406.2|CNS0GNFW Tetraodon nigroviridis full-length cDNA
          Length = 1099

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ggtagcggcgctgctggatc 148
           ||||||||||||||||||||
Sbjct: 411 ggtagcggcgctgctggatc 392



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>emb|CR725253.2|CNS0GMJV Tetraodon nigroviridis full-length cDNA
          Length = 1111

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 ggtagcggcgctgctggatc 148
           ||||||||||||||||||||
Sbjct: 422 ggtagcggcgctgctggatc 403



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                          
Query: 136    gcgctgctggatctgaagccgcacccggagggcggctactacgccgagaccttccgcgac 195
              |||| ||||| ||| || ||||||||||| |||||| ||||   ||||||||| ||||||
Sbjct: 515066 gcgcggctgggtctcaaaccgcacccggaaggcggccactatcgcgagacctttcgcgac 515007



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>ref|XM_789318.1| PREDICTED: Strongylocentrotus purpuratus similar to Est1p-like
            protein A (LOC589683), partial mRNA
          Length = 4816

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  tggcatttctacaagggaga 347
            ||||||||||||||||||||
Sbjct: 3021 tggcatttctacaagggaga 3040



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>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3
             Contains part of the TNR gene for tenascin R (restrictin,
             janusin), a novel gene and one CpG island, complete
             sequence
          Length = 138636

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    atccagaggaggagatgggc 105
             ||||||||||||||||||||
Sbjct: 92462 atccagaggaggagatgggc 92481



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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 147    tctgaagccgcacccggagggcgg 170
              |||| |||||||||||||||||||
Sbjct: 330111 tctgcagccgcacccggagggcgg 330134



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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 207    cctcgccaccgcccagctcccgccgcag 234
              ||||||||||||| || |||||||||||
Sbjct: 290137 cctcgccaccgccgagatcccgccgcag 290110



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>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence
          Length = 185980

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 409   cacctggacgctggccagcgcccc 432
             ||||||||||||||||| ||||||
Sbjct: 63224 cacctggacgctggccaccgcccc 63201



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 216     cgcccagctcccgccgcagt 235
               ||||||||||||||||||||
Sbjct: 3958642 cgcccagctcccgccgcagt 3958623



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      tccgcgactcctccgtctcc 207
                ||||||||||||||||||||
Sbjct: 28603730 tccgcgactcctccgtctcc 28603711



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>gb|AC079117.6| Homo sapiens BAC clone RP11-122D13 from 2, complete sequence
          Length = 160324

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 281    ctgcaggaagtgtttcacgtctgc 304
              ||||||||||||| ||||||||||
Sbjct: 142130 ctgcaggaagtgtatcacgtctgc 142153



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 144     ggatctgaagccgcacccgg 163
               ||||||||||||||||||||
Sbjct: 4201148 ggatctgaagccgcacccgg 4201129



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>dbj|AK068594.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154G15, full
           insert sequence
          Length = 1948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 188 tccgcgactcctccgtctcc 207
           ||||||||||||||||||||
Sbjct: 276 tccgcgactcctccgtctcc 295



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 412     ctggacgctggccagcgccc 431
               ||||||||||||||||||||
Sbjct: 4301052 ctggacgctggccagcgccc 4301071


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,736,618
Number of Sequences: 3902068
Number of extensions: 3736618
Number of successful extensions: 71997
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71438
Number of HSP's gapped (non-prelim): 552
length of query: 628
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 605
effective length of database: 17,143,297,704
effective search space: 10371695110920
effective search space used: 10371695110920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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