| Clone Name | bags19n09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123519.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0017B18, complete sequence Length = 150279 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 307 tgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctctacgtc 366 |||| ||||||||||| ||||||||||||||||||| || |||| |||| |||||||| Sbjct: 102678 tgcagcttcaacggcgtgtggaacggcggcggcggcgttgggcaggacgagatctacgtc 102737 Query: 367 acctccagcttctactacat 386 || ||||||||||||||||| Sbjct: 102738 acatccagcttctactacat 102757 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 122869 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 122928 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 122929 tctacgttgcgaccagtttctactacatggc 122959 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 181 ggcaaatacacctacaacggggagcaatacgacgccatagcagcaccgcaagg 233 ||||||| |||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 102552 ggcaaattcacctacaacggggagcagtacgaagcaatggcagcaccacaagg 102604 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcgg 341 |||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 75039 ccaagaactgcagcttcaacggcgtctggaacggtggtggcgg 75081
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 307 tgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctctacgtc 366 |||| ||||||||||| ||||||||||||||||||| || |||| |||| |||||||| Sbjct: 1206872 tgcagcttcaacggcgtgtggaacggcggcggcggcgttgggcaggacgagatctacgtc 1206931 Query: 367 acctccagcttctactacat 386 || ||||||||||||||||| Sbjct: 1206932 acatccagcttctactacat 1206951 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 13850926 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 13850867 Query: 363 cgt 365 ||| Sbjct: 13850866 cgt 13850864 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 13814444 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 13814385 Query: 363 cgt 365 ||| Sbjct: 13814384 cgt 13814382 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 1227063 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 1227122 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 1227123 tctacgttgcgaccagtttctactacatggc 1227153 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 181 ggcaaatacacctacaacggggagcaatacgacgccatagcagcaccgcaagg 233 ||||||| |||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 1206746 ggcaaattcacctacaacggggagcagtacgaagcaatggcagcaccacaagg 1206798 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcgg 341 |||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 1179233 ccaagaactgcagcttcaacggcgtctggaacggtggtggcgg 1179275
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 307 tgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctctacgtc 366 |||| ||||||||||| ||||||||||||||||||| || |||| |||| |||||||| Sbjct: 1204593 tgcagcttcaacggcgtgtggaacggcggcggcggcgttgggcaggacgagatctacgtc 1204652 Query: 367 acctccagcttctactacat 386 || ||||||||||||||||| Sbjct: 1204653 acatccagcttctactacat 1204672 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 13932928 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 13932869 Query: 363 cgt 365 ||| Sbjct: 13932868 cgt 13932866 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 13896446 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 13896387 Query: 363 cgt 365 ||| Sbjct: 13896386 cgt 13896384 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 1224784 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 1224843 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 1224844 tctacgttgcgaccagtttctactacatggc 1224874 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 181 ggcaaatacacctacaacggggagcaatacgacgccatagcagcaccgcaagg 233 ||||||| |||||||||||||||||| ||||| || || |||||||| ||||| Sbjct: 1204467 ggcaaattcacctacaacggggagcagtacgaagcaatggcagcaccacaagg 1204519 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcgg 341 |||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 1176954 ccaagaactgcagcttcaacggcgtctggaacggtggtggcgg 1176996
>gb|AC145812.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0096A19 map near 50283S, complete sequence Length = 139969 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 88485 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 88426 Query: 363 cgt 365 ||| Sbjct: 88425 cgt 88423 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Minus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 52003 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 51944 Query: 363 cgt 365 ||| Sbjct: 51943 cgt 51941
>dbj|AK119786.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F08, full insert sequence Length = 1689 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 1127 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 1186 Query: 363 cgt 365 ||| Sbjct: 1187 cgt 1189 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 49 gagtacctcaaaggaaaagattacaacgtctacgttcacagctacttgca 98 ||||| ||||| ||||||||||| ||| | || |||||||| |||||||| Sbjct: 873 gagtatctcaagggaaaagattataacctttatgttcacagttacttgca 922
>dbj|AK104429.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-C10, full insert sequence Length = 1686 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 1124 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 1183 Query: 363 cgt 365 ||| Sbjct: 1184 cgt 1186 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 49 gagtacctcaaaggaaaagattacaacgtctacgttcacagctacttgca 98 ||||| ||||| ||||||||||| ||| | || |||||||| |||||||| Sbjct: 870 gagtatctcaagggaaaagattataacctttatgttcacagttacttgca 919
>dbj|AK104082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-C02, full insert sequence Length = 1686 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 1124 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 1183 Query: 363 cgt 365 ||| Sbjct: 1184 cgt 1186 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 49 gagtacctcaaaggaaaagattacaacgtctacgttcacagctacttgca 98 ||||| ||||| ||||||||||| ||| | || |||||||| |||||||| Sbjct: 870 gagtatctcaagggaaaagattataacctttatgttcacagttacttgca 919
>dbj|AK069955.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036G10, full insert sequence Length = 1691 Score = 77.8 bits (39), Expect = 4e-11 Identities = 57/63 (90%) Strand = Plus / Plus Query: 303 gaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagctcta 362 |||||||| ||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct: 1129 gaactgcagcttcaacggcgtgtggaacggcggcggcggcgccggcatggccgacctcta 1188 Query: 363 cgt 365 ||| Sbjct: 1189 cgt 1191 Score = 44.1 bits (22), Expect = 0.52 Identities = 43/50 (86%) Strand = Plus / Plus Query: 49 gagtacctcaaaggaaaagattacaacgtctacgttcacagctacttgca 98 ||||| ||||| ||||||||||| ||| | || |||||||| |||||||| Sbjct: 875 gagtatctcaagggaaaagattataacctttatgttcacagttacttgca 924
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 1132258 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 1132317 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 1132318 tctacgttgcgaccagtttctactacatggc 1132348
>dbj|AK100760.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119H05, full insert sequence Length = 1834 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 792 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 851 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 852 tctacgttgcgaccagtttctactacatggc 882
>dbj|AK059453.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B11, full insert sequence Length = 735 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 231 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 290 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 291 tctacgttgcgaccagtttctactacatggc 321
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 1132258 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 1132317 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 1132318 tctacgttgcgaccagtttctactacatggc 1132348
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126974 Score = 69.9 bits (35), Expect = 9e-09 Identities = 77/91 (84%) Strand = Plus / Plus Query: 299 ccaagaactgcaccttcaacggcgcgtggaacggcggcggcggccccggccaggccgagc 358 |||| ||||||| ||||||||| | ||||||||||||||| ||| | || |||| ||||| Sbjct: 71241 ccaacaactgcagcttcaacggagtgtggaacggcggcggtggcgctgggcaggacgagc 71300 Query: 359 tctacgtcacctccagcttctactacatggc 389 ||||||| | |||| |||||||||||||| Sbjct: 71301 tctacgttgcgaccagtttctactacatggc 71331
>gb|BT018406.1| Zea mays clone EL01N0326A05.d mRNA sequence Length = 1460 Score = 48.1 bits (24), Expect = 0.033 Identities = 54/64 (84%) Strand = Plus / Plus Query: 137 ccaaaaacggaccagtcagctactgcgtgctgcgcggatacgatggcaaatacacctaca 196 |||| ||||||||| |||||| |||| |||||||||||| ||| ||||| ||||||| Sbjct: 614 ccaagaacggaccattcagctcctgcatgctgcgcggatttagtggtaaatatacctaca 673 Query: 197 acgg 200 |||| Sbjct: 674 acgg 677 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 70 tacaacgtctacgttcacagctacttgc 97 ||||| || ||||||||||||||||||| Sbjct: 547 tacaatgtatacgttcacagctacttgc 574
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 562 tactccctgctcgtggacgggtt 584 ||||||||||||||||||||||| Sbjct: 2443458 tactccctgctcgtggacgggtt 2443436
>emb|AL354815.10| Human DNA sequence from clone RP11-760M1 on chromosome 13 Contains three novel genes, the 5' end of the TNFRSF19 gene for tumour necrosis factor receptor superfamily member 19 and two CpG islands, complete sequence Length = 168663 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 479 tgagcttcctggaggccaaggc 500 |||||||||||||||||||||| Sbjct: 53200 tgagcttcctggaggccaaggc 53221
>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence Length = 165158 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggccaggccg 355 |||||||||||||||||||| ||||| Sbjct: 75703 cggcggcggcggccccggcccggccg 75678
>gb|AC123886.7| Homo sapiens BAC clone RP11-404O21 from 2, complete sequence Length = 162447 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggccaggccg 355 |||||||||||||||||||| ||||| Sbjct: 42224 cggcggcggcggccccggcccggccg 42199 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 42352 cggcggcggcggccccggcc 42333 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 42288 cggcggcggcggccccggcc 42269 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 42181 cggcggcggcggccccggcc 42162 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 42116 cggcggcggcggccccggcc 42097
>dbj|AK072692.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140I22, full insert sequence Length = 1706 Score = 44.1 bits (22), Expect = 0.52 Identities = 49/58 (84%) Strand = Plus / Plus Query: 49 gagtacctcaaaggaaaagattacaacgtctacgttcacagctacttgcactacggcg 106 ||||| ||||| ||||||||||| ||| | || || |||||||| |||||||| |||| Sbjct: 717 gagtatctcaagggaaaagattataacatttatgtgcacagctatttgcactatggcg 774
>gb|AC151766.1| Ornithorhynchus anatinus chromosome UNK clone OABb-433A1, complete sequence Length = 161653 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 acggcggcggcggccccggcc 349 ||||||||||||||||||||| Sbjct: 73274 acggcggcggcggccccggcc 73254
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 gcggcggcggccccggccagg 352 ||||||||||||||||||||| Sbjct: 780421 gcggcggcggccccggccagg 780441
>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence Length = 185904 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gtggaacggcggcggcggccc 344 ||||||||||||||||||||| Sbjct: 79592 gtggaacggcggcggcggccc 79572
>gb|U82749.1|MAU82749 Mycobacterium avium glyceraldehyde-3-phosphate dehydrogenase homolog (gapdh) gene, complete cds; and phosphoglycerate kinase gene, partial cds Length = 2530 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 442 gcggcgttcagggccgccgccgagg 466 |||||||||| |||||||||||||| Sbjct: 1134 gcggcgttcaaggccgccgccgagg 1158
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gtggaacggcggcggcggccc 344 ||||||||||||||||||||| Sbjct: 2576712 gtggaacggcggcggcggccc 2576692
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 cagggccgccgccgaggagat 470 ||||||||||||||||||||| Sbjct: 5509759 cagggccgccgccgaggagat 5509779
>gb|AY111776.1| Zea mays CL39796_1 mRNA sequence Length = 952 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 301 aagaactgcaccttcaacggcgcgtggaacggcggcggcgg 341 ||||||||||||||||| ||| ||||| ||||||||||| Sbjct: 811 aagaactgcaccttcaatggcatatggaatggcggcggcgg 771 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 531 gccctacatctgcatggaccttgtctaccagta 563 ||||||| | ||||||||||||| ||||||||| Sbjct: 581 gccctacctgtgcatggaccttgcctaccagta 549
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 324 gtggaacggcggcggcggccc 344 ||||||||||||||||||||| Sbjct: 2576663 gtggaacggcggcggcggccc 2576643
>gb|AC125180.6| Mus musculus BAC clone RP23-322K1 from chromosome 14, complete sequence Length = 200560 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 134888 cggcggcggcggccccggcc 134869
>gb|AC164157.3| Mus musculus BAC clone RP24-297C1 from chromosome 6, complete sequence Length = 176868 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 152290 cggcggcggcggccccggcc 152309
>gb|DQ215467.1| Taeniopygia guttata clone 0058P0010H07 MGC15397 variant 1-like mRNA, complete sequence Length = 1115 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 74 cggcggcggcggccccggcc 93
>ref|NM_001030604.1| Gallus gallus SLIT-ROBO Rho GTPase activating protein 3 (SRGAP3), mRNA Length = 2858 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gacagcgaggcgagcagcgg 428 |||||||||||||||||||| Sbjct: 2566 gacagcgaggcgagcagcgg 2585
>ref|XM_469478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2109 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 1753 ggcggcagctccggccaggccgagctct 1780
>ref|NM_015209.1| Homo sapiens kazrin (KIAA1026), transcript variant A, mRNA Length = 1475 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 332 cggcggcggcggccccggcc 351
>ref|XM_513047.1| PREDICTED: Pan troglodytes similar to KIAA1026 protein (LOC456454), mRNA Length = 2790 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 1077 cggcggcggcggccccggcc 1096
>gb|BC050920.1| Mus musculus atrophin 1, mRNA (cDNA clone MGC:63230 IMAGE:6406687), complete cds Length = 4421 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 70 cggcggcggcggccccggcc 51
>gb|AY505119.1| Homo sapiens kazrin isoform A mRNA, complete cds Length = 1475 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 332 cggcggcggcggccccggcc 351
>ref|XM_882735.1| PREDICTED: Bos taurus hypothetical protein LOC617310 (LOC617310), mRNA Length = 641 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 245 cggcggcggcggccccggcc 226
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tgagaatcagcgcgccatgc 294 |||||||||||||||||||| Sbjct: 4975152 tgagaatcagcgcgccatgc 4975133
>ref|NM_007881.4| Mus musculus atrophin 1 (Atn1), mRNA Length = 4426 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 70 cggcggcggcggccccggcc 51
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 28219463 ggcggcagctccggccaggccgagctct 28219490
>ref|XM_977723.1| PREDICTED: Mus musculus hypothetical protein LOC669002 (LOC669002), mRNA Length = 915 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 247 cggcggcggcggccccggcc 266
>ref|XM_989737.1| PREDICTED: Mus musculus hypothetical protein LOC667319 (LOC667319), mRNA Length = 915 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 247 cggcggcggcggccccggcc 266
>ref|XM_001003232.1| PREDICTED: Mus musculus hypothetical protein LOC677407 (LOC677407), mRNA Length = 915 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 247 cggcggcggcggccccggcc 266
>ref|XM_542202.2| PREDICTED: Canis familiaris similar to adenomatosis polyposis coli 2 (LOC485084), mRNA Length = 7620 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 4734 cggcggcggcggccccggcc 4753
>ref|XM_533529.2| PREDICTED: Canis familiaris similar to SMC5 protein, transcript variant 1 (LOC476327), mRNA Length = 3354 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggccaggccgagctct 361 ||||||||||||| ||||| ||||||||||| Sbjct: 129 cggcggcggcggcgccggcggggccgagctct 98
>ref|XM_844186.1| PREDICTED: Canis familiaris similar to Growth-arrest-specific protein 1 precursor (GAS-1) (LOC607496), mRNA Length = 1032 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 277 cggcggcggcggccccggcc 258
>ref|NM_017228.1| Rattus norvegicus atrophin 1 (Atn1), mRNA Length = 4387 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 61 cggcggcggcggccccggcc 42
>emb|AL391597.15| Human DNA sequence from clone RP11-357P18 on chromosome 1 Contains the 3' end of the DAF gene for decay accelerating factor for complement (CD55, Cromer blood group system) and the 5' end of CR2 gene for complement component (3d/Epstein Barr virus) receptor 2, complete sequence Length = 141124 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 aagagtacctcaaaggaaaa 66 |||||||||||||||||||| Sbjct: 82012 aagagtacctcaaaggaaaa 81993
>emb|AL034395.6|HS243L18 Human DNA sequence from clone RP1-243L18 on chromosome 1p36.11-36.23 Contains the 5' end of a novel gene (KIAA1026) and a CpG island, complete sequence Length = 110654 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 91789 cggcggcggcggccccggcc 91770
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caacggggagcaatacgacg 214 |||||||||||||||||||| Sbjct: 4221121 caacggggagcaatacgacg 4221140
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 acgccggcggcgttcagggc 455 |||||||||||||||||||| Sbjct: 41392 acgccggcggcgttcagggc 41411
>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29 Length = 339650 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 acggcggcggcggccccggc 348 |||||||||||||||||||| Sbjct: 253122 acggcggcggcggccccggc 253103
>emb|AJ719759.1| Gallus gallus mRNA for hypothetical protein, clone 6c21 Length = 2858 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gacagcgaggcgagcagcgg 428 |||||||||||||||||||| Sbjct: 2566 gacagcgaggcgagcagcgg 2585
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 ccggccaggccgagctctac 363 |||||||||||||||||||| Sbjct: 75378 ccggccaggccgagctctac 75359
>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete sequence Length = 180877 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 94155 cggcggcggcggccccggcc 94136
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 336 cggcggccccggccaggccgagct 359 ||||||||||||||||||| |||| Sbjct: 389516 cggcggccccggccaggccaagct 389493
>dbj|AB028949.1| Homo sapiens mRNA for KIAA1026 protein, partial cds Length = 5592 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 417 cggcggcggcggccccggcc 436
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 acggcggcggcggccccggc 348 |||||||||||||||||||| Sbjct: 3333768 acggcggcggcggccccggc 3333787
>gb|U31777.1|RNU31777 Rattus norvegicus atrophin-1 (DRPLA) mRNA, complete cds Length = 4387 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 61 cggcggcggcggccccggcc 42
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 70604 ggcggcagctccggccaggccgagctct 70631
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 acggcggcggcggccccggc 348 |||||||||||||||||||| Sbjct: 3511400 acggcggcggcggccccggc 3511381
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggccaggccgag 357 ||||||||||| | |||||||||||||| Sbjct: 698744 cggcggcggcgtcaccggccaggccgag 698771
>gb|AF298154.1|AF298154 Arcanobacterium pyogenes BirA (birA) gene, partial cds; and neuraminidase NanH (nanH) gene, complete cds Length = 4802 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 314 tcaacggcgcgtggaacggcggcg 337 |||||||||||||| ||||||||| Sbjct: 1984 tcaacggcgcgtggcacggcggcg 2007
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 acggcggcggcggccccggc 348 |||||||||||||||||||| Sbjct: 2008955 acggcggcggcggccccggc 2008974
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 28310787 ggcggcagctccggccaggccgagctct 28310814
>gb|AC022210.8| Homo sapiens BAC clone RP11-617F9 from 2, complete sequence Length = 164846 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggccaggccgag 357 ||||||||||||| ||||||||||||| Sbjct: 86053 cggcggcggcggcggcggccaggccgag 86080
>gb|AF271693.1|AF271693 Mycobacteriophage Bxb1, complete sequence Length = 50550 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 gggccgccgccgaggagatctgcccgat 479 |||| |||||||||||||||||| |||| Sbjct: 24802 gggcagccgccgaggagatctgctcgat 24775
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 cgagcagcgggaagaccacg 438 |||||||||||||||||||| Sbjct: 2260764 cgagcagcgggaagaccacg 2260783
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggccaggc 353 |||||||||||||| ||||||||| Sbjct: 1449210 cggcggcggcggcctcggccaggc 1449233
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 396 cgtcggcctgatcgacagcg 415 |||||||||||||||||||| Sbjct: 3237174 cgtcggcctgatcgacagcg 3237155
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 cggcggcggccccggccagg 352 |||||||||||||||||||| Sbjct: 774402 cggcggcggccccggccagg 774421
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 caacggggagcaatacgacg 214 |||||||||||||||||||| Sbjct: 4315185 caacggggagcaatacgacg 4315204
>ref|NM_210247.1| Eremothecium gossypii AER033Wp (AER033W), mRNA Length = 840 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggccaggccgag 357 ||||||||||| | |||||||||||||| Sbjct: 651 cggcggcggcgtcaccggccaggccgag 678
>gb|BT023990.1| Zea mays clone EL01N0412C01 mRNA sequence Length = 1802 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 24 cggcggcggcggccccggcc 43
>gb|BC036877.1| Homo sapiens cDNA clone IMAGE:5242289, partial cds Length = 2697 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 2294 cggcggcggcggccccggcc 2275
>gb|AY781175.1| Oryza sativa (indica cultivar-group) gibberellic acid-insensitive (GAI) gene, promoter region and complete cds Length = 3494 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 3025 ggcggcagctccggccaggccgagctct 3052
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 acggcggcggcggccccggc 348 |||||||||||||||||||| Sbjct: 223562 acggcggcggcggccccggc 223581
>gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence Length = 227538 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 cggcggcggcggccccggcc 349 |||||||||||||||||||| Sbjct: 141392 cggcggcggcggccccggcc 141373
>gb|AY500153.1| Mycobacteriophage Bethlehem, complete genome Length = 52250 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 gggccgccgccgaggagatctgcccgat 479 |||| |||||||||||||||||| |||| Sbjct: 25994 gggcagccgccgaggagatctgctcgat 25967
>gb|AY500152.1| Mycobacteriophage U2, complete genome Length = 51277 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 452 gggccgccgccgaggagatctgcccgat 479 |||| |||||||||||||||||| |||| Sbjct: 24856 gggcagccgccgaggagatctgctcgat 24829
>dbj|AB030956.1| Oryza sativa (japonica cultivar-group) mRNA for OsGAI, complete cds Length = 2500 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 334 ggcggcggccccggccaggccgagctct 361 |||||| || |||||||||||||||||| Sbjct: 1737 ggcggcagctccggccaggccgagctct 1764 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,589,245 Number of Sequences: 3902068 Number of extensions: 4589245 Number of successful extensions: 112978 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 109748 Number of HSP's gapped (non-prelim): 3229 length of query: 598 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 575 effective length of database: 17,143,297,704 effective search space: 9857396179800 effective search space used: 9857396179800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)