ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19n04 |
|---|---|
| Clone Library Name | barley_pub |
>SNF8_XENTR (Q5RJU0) Vacuolar sorting protein SNF8| Length = 257 Score = 204 bits (519), Expect = 1e-52 Identities = 98/177 (55%), Positives = 127/177 (71%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L F++ LEEFA KHK +IRKN FR QF +MCA +GVDPLAS KG W+E+LG+GDFYYE Sbjct: 40 LEMFKTNLEEFASKHKQEIRKNPQFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYE 99 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 LGVQI+++C+A + HNGGLI L EL + + + R +S DD +RAI KLKVLG+GF Sbjct: 100 LGVQIIEVCLALKHHNGGLITLAELHQHVLKGRGKLAQDVSQDDIIRAIKKLKVLGNGFG 159 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 + VG LV+SVP ELN DH +L+LA+ KG+VTV +++ +W T RA LE L Sbjct: 160 IIPVGGSYLVQSVPAELNMDHTVVLQLAEKKGFVTVNEIKSSLNWETERAKHVLEHL 216
>SNF8_RAT (Q5RK19) Vacuolar sorting protein SNF8 (ELL-associated protein of| 30 kDa) Length = 258 Score = 197 bits (502), Expect = 1e-50 Identities = 95/177 (53%), Positives = 123/177 (69%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L F++ LEEFA KHK +IRKN FR QF +MCA +GVDPLAS KG W+E+LG+GDFYYE Sbjct: 40 LDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYE 99 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 LGVQI+++C+A + NGGLI L EL + + + R +S DD +RAI KLK LG+GF Sbjct: 100 LGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFG 159 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 + VG L++SVP ELN DH +L+LA+ GYVTV +++ W T RA LE L Sbjct: 160 IIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHL 216
>SNF8_MOUSE (Q9CZ28) Vacuolar sorting protein SNF8| Length = 258 Score = 197 bits (502), Expect = 1e-50 Identities = 95/177 (53%), Positives = 123/177 (69%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L F++ LEEFA KHK +IRKN FR QF +MCA +GVDPLAS KG W+E+LG+GDFYYE Sbjct: 40 LDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYE 99 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 LGVQI+++C+A + NGGLI L EL + + + R +S DD +RAI KLK LG+GF Sbjct: 100 LGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFG 159 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 + VG L++SVP ELN DH +L+LA+ GYVTV +++ W T RA LE L Sbjct: 160 IIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKTSLKWETERARQVLEHL 216
>SNF8_HUMAN (Q96H20) Vacuolar sorting protein SNF8 (ELL-associated protein of| 30 kDa) Length = 258 Score = 197 bits (502), Expect = 1e-50 Identities = 95/177 (53%), Positives = 123/177 (69%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L F++ LEEFA KHK +IRKN FR QF +MCA +GVDPLAS KG W+E+LG+GDFYYE Sbjct: 40 LDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYE 99 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 LGVQI+++C+A + NGGLI L EL + + + R +S DD +RAI KLK LG+GF Sbjct: 100 LGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFG 159 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 + VG L++SVP ELN DH +L+LA+ GYVTV +++ W T RA LE L Sbjct: 160 IIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHL 216
>SNF8_BRARE (Q5U3V9) Vacuolar sorting protein SNF8| Length = 258 Score = 197 bits (500), Expect = 2e-50 Identities = 96/177 (54%), Positives = 123/177 (69%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L TF++ LEEFA KHK +IRK+S FR QF EMCA +GVDPLAS KG W E+LG+GDFYYE Sbjct: 40 LDTFKTHLEEFASKHKQEIRKSSQFRVQFQEMCATIGVDPLASGKGFWPEMLGVGDFYYE 99 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 LGVQI+++C+A + NGGLI L EL + + R +S DD +RAI KLK +G+GF Sbjct: 100 LGVQIIEVCLALKHRNGGLITLDELHHRVLKGRGKFAQDVSQDDLVRAIKKLKAMGNGFG 159 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 + VG LV+SVP ELN DH +L+LA+ KGYVTV ++ + W RA L+ L Sbjct: 160 MIPVGGTYLVQSVPAELNMDHTVVLQLAEKKGYVTVSEIRESLKWEKERACHVLDHL 216
>SNF8_YEAST (Q12483) Vacuolar sorting protein SNF8 (Vacuolar protein| sorting-associated protein VPS22) Length = 233 Score = 115 bits (287), Expect = 1e-25 Identities = 63/177 (35%), Positives = 99/177 (55%) Frame = +2 Query: 2 LATFRSQLEEFARKHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYE 181 L F+ +L EFA+KH S+++ + FR +F MC+ +G+DPL+ L + DFYYE Sbjct: 36 LMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRD-KHLFTVNDFYYE 94 Query: 182 LGVQIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 + +++++IC T+ NGG+I EL K+ +K L DD ++I LK L FE Sbjct: 95 VCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGL-----DDLEKSIDMLKSLEC-FE 148 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQAKGYVTVEQVEKEFSWSTGRAIDALETL 532 +F + KK +RSVP EL D ILE+ GY ++ ++ W R+ AL+ + Sbjct: 149 IFQIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEM 205
>GLPR_SHIFL (P0ACL1) Glycerol-3-phosphate regulon repressor| Length = 252 Score = 32.3 bits (72), Expect = 0.85 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 422 HNGILELAQAKGYVTVEQVEKEFSWS 499 HNGI+EL + +GYV+ E++ + FS S Sbjct: 7 HNGIIELVKQQGYVSTEELVEHFSVS 32
>GLPR_ECOLI (P0ACL0) Glycerol-3-phosphate regulon repressor| Length = 252 Score = 32.3 bits (72), Expect = 0.85 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +2 Query: 422 HNGILELAQAKGYVTVEQVEKEFSWS 499 HNGI+EL + +GYV+ E++ + FS S Sbjct: 7 HNGIIELVKQQGYVSTEELVEHFSVS 32
>ZDS_CAPAN (Q9SMJ3) Zeta-carotene desaturase, chloroplast precursor (EC| 1.14.99.30) (Carotene 7,8-desaturase) Length = 588 Score = 32.0 bits (71), Expect = 1.1 Identities = 23/81 (28%), Positives = 37/81 (45%) Frame = +2 Query: 59 RKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYELGVQIVDICIATRSHNGGL 238 +K V + C G+ L K W EL G+ Y +GV +V + + +NG + Sbjct: 347 QKKIVKADAYVAACVVPGIKRLVPQK--WRELEFFGNIYKLIGVPVVTVQL---RYNGWV 401 Query: 239 IDLLELRKLLCQKRKTDLGSL 301 +L +L + KR T L +L Sbjct: 402 TELQDLERSRQSKRATGLDNL 422
>KIF4A_XENLA (Q91784) Chromosome-associated kinesin KLP1 (Chromokinesin)| Length = 1226 Score = 30.0 bits (66), Expect = 4.2 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%) Frame = +2 Query: 197 VDICIATRSHNGGLIDLLELRKLLCQ-----KRKTDLGSLSSDDCLRAISKLKVLGSGFE 361 V++ ++T L DLLE RK+L Q K+KTD G R + L + E Sbjct: 754 VEVLVSTEEAQRHLNDLLEDRKILAQDIAQLKQKTDAGERIPTKIRRRTYTVAELENLEE 813 Query: 362 VFSVGKKKLVRSVPTELNKDHNGILELAQ 448 SV K+ + S+ TE+ I +L Q Sbjct: 814 EASVTKQ--IESLETEMELRSAQIADLQQ 840
>YGCL_ECOLI (Q46901) Hypothetical protein ygcL| Length = 502 Score = 29.3 bits (64), Expect = 7.2 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +2 Query: 194 IVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDDCLRAISKLKVLG 349 ++D I R NGG + ++ L+ L C + + L D L A++ L +G Sbjct: 4 LIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIG 55
>RBGPR_HUMAN (Q9H2M9) Rab3 GTPase-activating protein non-catalytic subunit (Rab3| GTPase-activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) (RGAP-iso) Length = 1393 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Frame = -1 Query: 438 SSIPLWSLFNSVGTDR-TSFFFPTENTSKPLPRTLSLLIARKQSSDDNDPRSVFLFWQ 268 +S P S + +VG++ T FF+ E +++PL ++L +A K +S + S +L W+ Sbjct: 296 NSPPAMSQYITVGSNPFTGFFYALEGSTQPLLSHVALAVASKLTSALFNAASGWLGWK 353
>RS1_HELPJ (Q9ZKF6) 30S ribosomal protein S1| Length = 552 Score = 28.9 bits (63), Expect = 9.3 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Frame = +2 Query: 17 SQLEEFARKHKSD--IRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYELGV 190 S EEFA+KHK+D I+ V + F G+D L N+ +L + ++G Sbjct: 445 SPTEEFAQKHKTDSVIQGKVVSIKDFGVFIHADGIDVLIKNE----DLNPLKKDEIKIGQ 500 Query: 191 QIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDD 313 +I + +A N + + +L +K K +L + ++ D Sbjct: 501 EITCVVVAIEKSNNKV--RASVHRLERKKEKEELQAFNTSD 539
>RBSK_ECOLI (P0A9J6) Ribokinase (EC 2.7.1.15)| Length = 309 Score = 28.9 bits (63), Expect = 9.3 Identities = 21/57 (36%), Positives = 26/57 (45%) Frame = +2 Query: 80 QQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYELGVQIVDICIATRSHNGGLIDLL 250 Q HE + + L S +GVWA + G G VQ VD A + NG LI L Sbjct: 210 QVLHEKGIRTVLITLGS-RGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL 265
>RBSK_ECO57 (P0A9J7) Ribokinase (EC 2.7.1.15)| Length = 309 Score = 28.9 bits (63), Expect = 9.3 Identities = 21/57 (36%), Positives = 26/57 (45%) Frame = +2 Query: 80 QQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYELGVQIVDICIATRSHNGGLIDLL 250 Q HE + + L S +GVWA + G G VQ VD A + NG LI L Sbjct: 210 QVLHEKGIRTVLITLGS-RGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITAL 265
>RS1_HELPY (P56008) 30S ribosomal protein S1| Length = 556 Score = 28.9 bits (63), Expect = 9.3 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%) Frame = +2 Query: 17 SQLEEFARKHKSD--IRKNSVFRQQFHEMCAKVGVDPLASNKGVWAELLGIGDFYYELGV 190 S EEFA+KHK+D I+ V + F G+D L N+ +L + ++G Sbjct: 449 SPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGIDVLIKNE----DLNPLKKDEIKIGQ 504 Query: 191 QIVDICIATRSHNGGLIDLLELRKLLCQKRKTDLGSLSSDD 313 +I + +A N + + +L +K K +L + ++ D Sbjct: 505 EITCVVVAIEKSNNKV--RASVHRLERKKEKEELQAFNTSD 543
>RPOL_BPSP6 (P06221) DNA-directed RNA polymerase (EC 2.7.7.6)| Length = 874 Score = 28.9 bits (63), Expect = 9.3 Identities = 12/37 (32%), Positives = 21/37 (56%) Frame = +2 Query: 41 KHKSDIRKNSVFRQQFHEMCAKVGVDPLASNKGVWAE 151 K D+R ++V ++F +MC + DPL + WA+ Sbjct: 464 KKTFDVRVSNVLDEEFQDMCRDIAADPLTFTQ--WAK 498
>KNTC1_HUMAN (P50748) Kinetochore-associated protein 1 (Rough deal homolog) (hRod)| (HsROD) (Rod) Length = 2209 Score = 28.9 bits (63), Expect = 9.3 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Frame = +2 Query: 248 LELRKLLCQKRKTDLGSLSSDDC---LRAISKLKVLGSGFEVFSVGKKKLVRSVPTELNK 418 +++ K+LC +K +L D+C L+ ++ L FEVF + S+ +L + Sbjct: 960 VDILKILCDIQKDNLQK--KDECEEMLKLFKEVASLQENFEVFLSFEDYSNSSLVADLRE 1017 Query: 419 DHNGILELAQAK 454 H E+AQAK Sbjct: 1018 QHIKAHEVAQAK 1029 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,450,756 Number of Sequences: 219361 Number of extensions: 1417025 Number of successful extensions: 3815 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3771 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3813 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
