ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19n03 |
|---|---|
| Clone Library Name | barley_pub |
>BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 423 bits (1088), Expect = e-118 Identities = 205/205 (100%), Positives = 205/205 (100%) Frame = +2 Query: 26 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 205 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA Sbjct: 1 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 60 Query: 206 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 385 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM Sbjct: 61 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 120 Query: 386 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 565 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL Sbjct: 121 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 180 Query: 566 MLLWGVALIVRRMPGRFSALMLIVL 640 MLLWGVALIVRRMPGRFSALMLIVL Sbjct: 181 MLLWGVALIVRRMPGRFSALMLIVL 205
>BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 421 bits (1081), Expect = e-117 Identities = 204/205 (99%), Positives = 204/205 (99%) Frame = +2 Query: 26 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 205 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA Sbjct: 1 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 60 Query: 206 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 385 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM Sbjct: 61 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 120 Query: 386 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 565 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL Sbjct: 121 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 180 Query: 566 MLLWGVALIVRRMPGRFSALMLIVL 640 MLLWG ALIVRRMPGRFSALMLIVL Sbjct: 181 MLLWGGALIVRRMPGRFSALMLIVL 205
>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 328 bits (840), Expect = 1e-89 Identities = 156/205 (76%), Positives = 178/205 (86%) Frame = +2 Query: 26 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 205 MS L+RWLLIPPV+ARL RY+ YRRHGAS FSA LGC W ILAWI PLEHPRWQRIR Sbjct: 1 MSALSRWLLIPPVSARLSERYQGYRRHGASPFSAALGCLWTILAWIVFPLEHPRWQRIRD 60 Query: 206 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 385 HK LYPHINA+RPRPLDP RYLIQT WL++ +S KE +PR R+F+ L+++RGRYHQWM Sbjct: 61 GHKALYPHINAARPRPLDPARYLIQTLWLVMISSTKERHEPRWRSFARLKDVRGRYHQWM 120 Query: 386 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 565 + LPERV KT HL+++KELGHLS GARR ILG+IVTFSLILALIC+TQPFNPL+QFIFL Sbjct: 121 DTLPERVRQKTTHLEKEKELGHLSNGARRFILGVIVTFSLILALICITQPFNPLSQFIFL 180 Query: 566 MLLWGVALIVRRMPGRFSALMLIVL 640 +LLWGVAL+VRRMPGRFSALMLIVL Sbjct: 181 LLLWGVALLVRRMPGRFSALMLIVL 205
>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 328 bits (840), Expect = 1e-89 Identities = 156/205 (76%), Positives = 178/205 (86%) Frame = +2 Query: 26 MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILAWIFIPLEHPRWQRIRA 205 MS L+RWLLIPPV+ARL RY+ YRRHGAS FSA LGC W ILAWI PLEHPRWQRIR Sbjct: 1 MSALSRWLLIPPVSARLSERYQGYRRHGASPFSAALGCLWTILAWIVFPLEHPRWQRIRD 60 Query: 206 EHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRYHQWM 385 HK LYPHINA+RPRPLDP RYLIQT WL++ +S KE +PR R+F+ L+++RGRYHQWM Sbjct: 61 GHKALYPHINAARPRPLDPARYLIQTLWLVMISSTKERHEPRWRSFARLKDVRGRYHQWM 120 Query: 386 NELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSLILALICVTQPFNPLAQFIFL 565 + LPERV KT HL+++KELGHLS GARR ILG+IVTFSLILALIC+TQPFNPL+QFIFL Sbjct: 121 DTLPERVRQKTTHLEKEKELGHLSNGARRFILGVIVTFSLILALICITQPFNPLSQFIFL 180 Query: 566 MLLWGVALIVRRMPGRFSALMLIVL 640 +LLWGVAL+VRRMPGRFSALMLIVL Sbjct: 181 LLLWGVALLVRRMPGRFSALMLIVL 205
>SQV8_CAEEL (Q09363) Probable glucuronosyltransferase sqv-8 (EC 2.4.1.135)| (Vulval invagination protein sqv-8) (Squashed vulva protein 8) Length = 356 Score = 34.7 bits (78), Expect = 0.25 Identities = 18/60 (30%), Positives = 32/60 (53%) Frame = -2 Query: 639 STINISAEKRPGIRRTISATPHSSIRKINCASGLNG*VTQINARISEKVTMIPRINRRAP 460 +TI + K G+R I + +R LNG V +I+ +I + ++++PR+NR P Sbjct: 45 ATIEVLTRKSDGLRTQIFEKERNLVR-------LNGKVEEIDTQIRDHLSLLPRVNRSTP 97
>DEDD2_HUMAN (Q8WXF8) DNA-binding death effector domain-containing protein 2| (FADD-like anti-apoptotic molecule 3) (DED-containing protein FLAME-3) Length = 326 Score = 33.9 bits (76), Expect = 0.42 Identities = 29/93 (31%), Positives = 40/93 (43%) Frame = +2 Query: 194 RIRAEHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPKPRRRAFSGLQNIRGRY 373 R+ A H +L PH+ R RP+ P RY T +S K T RR + + Sbjct: 91 RVLARH-DLLPHLARKRRRPVSPERYSYGT-----SSSSKRTEGSCRRRRQSSSSANSQQ 144 Query: 374 HQWMNELPERVSHKTQHLDEKKELGHLSAGARR 472 QW E S T+ +++ G S GARR Sbjct: 145 GQW-----ETGSPPTKR--QRRSRGRPSGGARR 170
>TEP1_MOUSE (P97499) Telomerase protein component 1 (Telomerase-associated| protein 1) (Telomerase protein 1) (p240) (p80 homolog) Length = 2629 Score = 32.7 bits (73), Expect = 0.94 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 146 MILAWIFIPLEHPRWQRIRAEHKNLYPHINASRPRPLDPVRYLIQTCWLLIGASRKETPK 325 ++ W+ +P E W+ + A ++ P PL P YL+Q+ L+G E P Sbjct: 1443 ILSTWLILPKETKSWEEVLAAS-------HSGNPFPLCPFAYLVQSLRSLLGEGPVERPG 1495 Query: 326 PR 331 R Sbjct: 1496 AR 1497
>KCNN3_HUMAN (Q9UGI6) Small conductance calcium-activated potassium channel| protein 3 (SK3) (SKCa3) Length = 736 Score = 32.0 bits (71), Expect = 1.6 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = -1 Query: 640 QHNQH*RREAPRHPPYDQRYPPQQHQEDKLRQRVKRLSNAD*RQNQREGDDDTEDQPPRP 461 Q Q +++ + PP PQQ L+ + +L +Q Q++ + QPP P Sbjct: 30 QQQQQQQQQQQQPPPPAPPAAPQQPLGPSLQPQPPQLQQQQQQQQQQQQQQQQQQQPPHP 89 Query: 460 GTQMTEL 440 +Q+ +L Sbjct: 90 LSQLAQL 96
>ANDR_CANFA (Q9TT90) Androgen receptor (Dihydrotestosterone receptor)| Length = 907 Score = 31.2 bits (69), Expect = 2.7 Identities = 15/52 (28%), Positives = 27/52 (51%) Frame = -1 Query: 610 PRHPPYDQRYPPQQHQEDKLRQRVKRLSNAD*RQNQREGDDDTEDQPPRPGT 455 PRHP PP H + + +Q+ ++ ++ +Q Q++GDD + R T Sbjct: 39 PRHPEAVSAAPPGAHLQQQQQQQQQQETSPRQQQQQQQGDDGSPQAQSRGPT 90
>BAR6_CHITE (P08726) Balbiani ring protein 6 (Giant secretory protein I-C)| (GSP-IC) (Fragment) Length = 235 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 12/66 (18%) Frame = -1 Query: 622 RREAPRHPPYDQRYPPQQHQ--EDKLRQRVKRLSNAD*R----------QNQREGDDDTE 479 R E P P +R P++ ++++R++ KR + + R + +R D+D E Sbjct: 107 RPERPERPEEPEREEPEREPKCDEEMREKFKRRCDNENRRFDARRCECGEKKRPDDNDDE 166 Query: 478 DQPPRP 461 D+P RP Sbjct: 167 DRPERP 172 Score = 29.6 bits (65), Expect = 7.9 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Frame = -1 Query: 622 RREAPRHPPYDQRYPPQQHQ--EDKLRQRVKR-LSNAD*RQNQRE------------GDD 488 R E P P +R P++ +D++R++VKR N + R + R D+ Sbjct: 31 RPERPERPEEPEREEPEREPKCDDEMREKVKRRCDNENRRFDARRCECGEKKRPDDNDDN 90 Query: 487 DTEDQPPRP 461 D ED+P RP Sbjct: 91 DDEDRPERP 99
>TEP1_RAT (O08653) Telomerase protein component 1 (rTLP1)| (Telomerase-associated protein 1) (Telomerase protein 1) (p240) (p230) (p80 telomerase homolog) Length = 2629 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%) Frame = +2 Query: 146 MILAWIFIPLEHPRWQR-IRAEHK-NLYPHINASRPRPLDPVRYLIQTCWLLIGASRKET 319 ++ W+ +P E W+ + A H NLYP L P YL+Q+ L+G E Sbjct: 1447 VLSTWLTLPKETKSWEEAVAASHSGNLYP---------LAPFAYLVQSLRSLLGEGPVER 1497 Query: 320 PKPR 331 P R Sbjct: 1498 PGAR 1501
>CHD4_HUMAN (Q14839) Chromodomain helicase-DNA-binding protein 4 (EC 3.6.1.-)| (ATP-dependent helicase CHD4) (CHD-4) (Mi-2 autoantigen 218 kDa protein) (Mi2-beta) Length = 1912 Score = 30.4 bits (67), Expect = 4.6 Identities = 12/47 (25%), Positives = 26/47 (55%) Frame = -1 Query: 583 YPPQQHQEDKLRQRVKRLSNAD*RQNQREGDDDTEDQPPRPGTQMTE 443 Y P + ++ KL + ++ S + ++ + E DDD + + P+ Q+ E Sbjct: 110 YTPGKKKKKKLGPKKEKKSKSKRKEEEEEDDDDDDSKEPKSSAQLLE 156
>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC| 2.7.11.23) Length = 706 Score = 29.6 bits (65), Expect = 7.9 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Frame = -1 Query: 622 RREAPR---HPPYDQRYPPQQHQEDKLRQRVKRLSNAD*RQNQREGDDDTEDQPPRPGTQ 452 RR PR +PP ++ YPP+ ++ R + D R R+ D + +P P + Sbjct: 471 RRPPPRDRDYPPRERDYPPRDSRDRDYHPRDRDYPPRDSRDYPRDSRDSRDSRPISPSRE 530 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,033,746 Number of Sequences: 219361 Number of extensions: 1733704 Number of successful extensions: 5301 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 5035 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5288 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
