>RL3_ORYSA (P35684) 60S ribosomal protein L3|
          Length = 388

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 47/49 (95%), Positives = 49/49 (100%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMKGLKQ 148
           KAFTKYALKYDSDAGKKEIQMQLEKMKKYA++VRVIAHTQIRKMKGLKQ
Sbjct: 127 KAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQ 175

>RL3A_ARATH (P17094) 60S ribosomal protein L3|
          Length = 388

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 40/49 (81%), Positives = 44/49 (89%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMKGLKQ 148
           KAFT YA +YDS+ GKK IQ QLEKMKKYATV+RV+AHTQIRKMKGLKQ
Sbjct: 127 KAFTGYAKQYDSEDGKKGIQAQLEKMKKYATVIRVLAHTQIRKMKGLKQ 175

>RL3B_ARATH (P22738) 60S ribosomal protein L3|
          Length = 389

 Score = 78.2 bits (191), Expect = 6e-15
 Identities = 35/49 (71%), Positives = 45/49 (91%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMKGLKQ 148
           KAFT+Y+ K++++ GKK+IQ QLEKMKKY +V+RV+AHTQIRKMKGLKQ
Sbjct: 127 KAFTRYSKKHETEEGKKDIQSQLEKMKKYCSVIRVLAHTQIRKMKGLKQ 175

>RL3_DICDI (P34113) 60S ribosomal protein L3|
          Length = 397

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 25/45 (55%), Positives = 35/45 (77%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMK 136
           KAFTKY  +Y+++ GKK I+  L+ +KK  +VVRVIAHTQ+ K+K
Sbjct: 128 KAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKLK 172

>RL3_RAT (P21531) 60S ribosomal protein L3 (L4)|
          Length = 402

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTKY  K+  D GKK+++     MKKY  V+R+IAHTQ+R
Sbjct: 127 KAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMR 168

>RL3_MOUSE (P27659) 60S ribosomal protein L3 (J1 protein)|
          Length = 402

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTKY  K+  D GKK+++     MKKY  V+R+IAHTQ+R
Sbjct: 127 KAFTKYCKKWQDDTGKKQLEKDFNSMKKYCQVIRIIAHTQMR 168

>RL3_MACFA (Q4R5Q0) 60S ribosomal protein L3|
          Length = 402

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTKY  K+  + GKK+++     MKKY  V+RVIAHTQ+R
Sbjct: 127 KAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMR 168

>RL3_HUMAN (P39023) 60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein B)|
           (TARBP-B)
          Length = 402

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 23/42 (54%), Positives = 30/42 (71%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTKY  K+  + GKK+++     MKKY  V+RVIAHTQ+R
Sbjct: 127 KAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMR 168

>RL3_TOXCA (P49149) 60S ribosomal protein L3|
          Length = 401

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMK 136
           KAF K+A K+  + G+K I+  L KMKKY + +RVIAHTQ++ MK
Sbjct: 127 KAFQKHAKKWQDEDGRKSIEADLNKMKKYCSKIRVIAHTQMKVMK 171

>RL3_ASPFU (Q8NKF4) 60S ribosomal protein L3 (Allergen Asp f 23)|
          Length = 392

 Score = 52.8 bits (125), Expect = 3e-07
 Identities = 27/43 (62%), Positives = 33/43 (76%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKYA K+  + G   I  +LE++KKY TVVRV+AHTQIRK
Sbjct: 128 KAFTKYAKKHAEENGAS-ITRELERIKKYCTVVRVLAHTQIRK 169

>RL3_CANGA (Q6FTJ2) 60S ribosomal protein L3|
          Length = 387

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 25/43 (58%), Positives = 33/43 (76%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKY+ KY  +    EI+ +L ++KKYATVVRV+ HTQ+RK
Sbjct: 128 KAFTKYSAKYAQNGA--EIERELARIKKYATVVRVLVHTQVRK 168

>RL3_DEBHA (Q6BXM5) 60S ribosomal protein L3|
          Length = 389

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 24/43 (55%), Positives = 34/43 (79%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKY+ KY  D    +++ +L ++KKYA+VVRV+AHTQI+K
Sbjct: 128 KAFTKYSAKYAQDGA--QVERELARIKKYASVVRVLAHTQIKK 168

>RL3_BOVIN (P39872) 60S ribosomal protein L3|
          Length = 402

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 23/42 (54%), Positives = 29/42 (69%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTKY  K+    GKK+++     MKKY  V+RVIAHTQ+R
Sbjct: 127 KAFTKYCKKWQDADGKKQLERDFSSMKKYCQVIRVIAHTQMR 168

>RL3_CAEEL (P50880) 60S ribosomal protein L3|
          Length = 401

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMK 136
           KAFTKYA K+  + GKK I+    K+KKY + +RVIAHTQ++ ++
Sbjct: 128 KAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172

>RL3_CAEBR (Q9NBK4) 60S ribosomal protein L3|
          Length = 401

 Score = 52.0 bits (123), Expect = 4e-07
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMK 136
           KAFTKYA K+  + GKK I+    K+KKY + +RVIAHTQ++ ++
Sbjct: 128 KAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILR 172

>RL3_NEUCR (P59671) 60S ribosomal protein L3|
          Length = 392

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 27/43 (62%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKY  K+ SD     I  +LE++KKY TVVRV+AHTQIRK
Sbjct: 128 KAFTKYVKKH-SDNNGAAITRELERIKKYCTVVRVLAHTQIRK 169

>RL3B_SCHPO (P36584) 60S ribosomal protein L3-B|
          Length = 387

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKYA KY      + I  +LE++KKY +VVRV+AHTQIRK
Sbjct: 127 KAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRK 167

>RL3A_SCHPO (P40372) 60S ribosomal protein L3-A|
          Length = 387

 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 26/43 (60%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKYA KY      + I  +LE++KKY +VVRV+AHTQIRK
Sbjct: 127 KAFTKYAKKYAEST--QSINRELERIKKYCSVVRVLAHTQIRK 167

>RL3_DROME (O16797) 60S ribosomal protein L3|
          Length = 415

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 24/45 (53%), Positives = 31/45 (68%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRKMK 136
           KAFTK + K+  D GKK I+    KM +Y  V+RVIAH+QIR +K
Sbjct: 127 KAFTKASKKWTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIK 171

>RL3_YEAST (P14126) 60S ribosomal protein L3 (YL1) (RP1) (Maintenance of|
           killer protein 8) (Trichodermin resistance protein)
          Length = 386

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 25/43 (58%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKY+ KY  D     I+ +L ++KKYA+VVRV+ HTQIRK
Sbjct: 127 KAFTKYSAKYAQDGAG--IERELARIKKYASVVRVLVHTQIRK 167

>RL3_KLULA (Q6CJR7) 60S ribosomal protein L3|
          Length = 387

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFTKY+ KY  +    ++  +L ++KKYA+VVRV+ HTQ+RK
Sbjct: 128 KAFTKYSAKYAENGA--QVDRELARIKKYASVVRVLVHTQVRK 168

>RL3L_HUMAN (Q92901) 60S ribosomal protein L3-like|
          Length = 406

 Score = 44.7 bits (104), Expect = 7e-05
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTK   ++    GKK++Q     MKKY  V+RVI HTQ++
Sbjct: 127 KAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMK 168

>RL3L_BOVIN (Q3SZ10) 60S ribosomal protein L3-like|
          Length = 406

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 20/42 (47%), Positives = 27/42 (64%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAFTK   ++    GKK++Q     MKKY  V+RVI HTQ++
Sbjct: 127 KAFTKACKRWRDADGKKQLQKDFAAMKKYCKVIRVIVHTQMK 168

>RL3_ASHGO (Q759R7) 60S ribosomal protein L3|
          Length = 388

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +2

Query: 2   KAFTKYALKYDSDAGKKEIQMQLEKMKKYATVVRVIAHTQIRK 130
           KAFT+      +  G   I+ +L ++KKYA+VVRV+AHTQ+RK
Sbjct: 128 KAFTQVPPPSTAQDGAA-IERELARIKKYASVVRVLAHTQVRK 169

>DNAJ_CLOTE (Q892R1) Chaperone protein dnaJ|
          Length = 375

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 2   KAFTKYALKY--DSDAGKKEIQMQLEKMKKYATVVRVIAHTQIR 127
           KAF K ALKY  D +AG KE +   E+ K+     +V++  Q R
Sbjct: 23  KAFRKLALKYHPDKNAGNKEAE---ERFKEINEAYQVLSDPQKR 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,689,666
Number of Sequences: 219361
Number of extensions: 149303
Number of successful extensions: 466
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 80,573,946
effective HSP length: 25
effective length of database: 75,089,921
effective search space used: 1802158104
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)