>PTLCB_STRMU (P50976) PTS system lactose-specific EIICB component (EIICB-Lac)|
           (EII-Lac) [Includes: Lactose permease IIC component (PTS
           system lactose-specific EIIC component);
           Lactose-specific phosphotransferase enzyme IIB component
           (EC 2.7.1.69) (PTS sys
          Length = 568

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 30/148 (20%), Positives = 62/148 (41%)
 Frame = +2

Query: 26  LPXXTIERAKLEQVIKRLEKTARYFKNLGTLGFWSQLVCTFVSAGILSFSTVVTGKVTSP 205
           L   T  ++  + + ++LEKT +       + F S ++ +     I++      G   S 
Sbjct: 80  LVAGTTAKSLTDSMNRQLEKTNQ-------INFISTMLASMAGFLIMAADPAKEGGFLSA 132

Query: 206 FTFYTTAAGVAAAFISVFWSFGYIRLSERLRKTASAPAKAPPRADVIKSLKNGIVLNILG 385
           F       G+  AFI+ F +    ++  +   T   P + PP    +         +I+ 
Sbjct: 133 FM---GTKGLLTAFIAAFITVNVYKICVKNNVTIRMPEEVPPNISQVFKDIFPFAFSIII 189

Query: 386 MGAAVLGMQALVGALVAKALTTSAVPYY 469
           + A  L ++A++G  VA+++ T   P +
Sbjct: 190 LYAIQLAIKAVIGVNVAQSIGTLLAPLF 217

>ANXA7_DICDI (P24639) Annexin A7 (Annexin VII) (Synexin)|
          Length = 462

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 18/39 (46%), Positives = 21/39 (53%)
 Frame = +1

Query: 109 GYPRVLVPVGVHVCFCWNFVILHSCYWEGYIALYILHNC 225
           GYP V VPVGV V F    V+    Y +GY    I H+C
Sbjct: 128 GYPPVGVPVGVPVGFAPGMVV---GYHQGYFVGTITHDC 163

>CWC2_CANAL (Q59W50) Pre-mRNA-splicing factor CWC2|
          Length = 363

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 397 CSRYAGTCWCFGSKSPYYLCSPLLSDNFRWSKSCFG 504
           C  ++  C   GSK  Y+   P  SDNF+ ++ CFG
Sbjct: 84  CLFFSRGCCYLGSKCQYFHRLPKESDNFKPTQDCFG 119

>KRA51_HUMAN (Q6L8H4) Keratin-associated protein 5-1 (Keratin-associated protein|
           5.1) (Ultrahigh sulfur keratin-associated protein 5.1)
          Length = 278

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 27/96 (28%), Positives = 34/96 (35%)
 Frame = -2

Query: 478 SCLIIGDCRGSKGFCYQSTNKCLHTENSCAHPKNIEHNAIFQTFNHISPWRSLCGCACCF 299
           SC   G C GSKG C  S ++C     SC  P                   S CG +CC 
Sbjct: 216 SCSSCGSCAGSKGGCGSSCSQC-----SCCKP---------------CCCSSGCGSSCC- 254

Query: 298 P*SFRQTDVTK*PED*DKSCSNTSSSCVECKGRCNL 191
                Q+          K C + SS CV    +C +
Sbjct: 255 -----QSSCC-------KPCCSQSSCCVPVCCQCKI 278

>SEM3D_CHICK (Q90663) Semaphorin-3D precursor (Collapsin-2) (COLL-2)|
          Length = 761

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
 Frame = +1

Query: 229 WCCCSFYLSLLVIWLHPSV*KTTENSKRTRK---GSSTG*CD*KSEKWH-----CAQY-- 378
           W      L  L I+ HPS   T E S++ ++   GS  G       + H     CA    
Sbjct: 475 WTKEEVVLEELQIFKHPSFISTMEISQKQQQLYIGSRDGLVQLSLHRCHTYGKACADCCL 534

Query: 379 ------SWDGRSCSRYAGT 417
                 +WDG SCSRYA T
Sbjct: 535 ARDPYCAWDGNSCSRYAPT 553

>ODO2_HUMAN (P36957) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 453

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 501 KTGL*PAEVV***GTAEVVRAFATKA-PTSACIPRTAAPIPRILSTMP 361
           KTG  PA+       AE   A A KA PT+A +P  AAPIP  +  +P
Sbjct: 145 KTGAAPAKAK----PAEAPAAAAPKAEPTAAAVPPPAAPIPTQMPPVP 188

>KRA53_HUMAN (Q6L8H2) Keratin-associated protein 5-3 (Keratin-associated protein|
           5.3) (Ultrahigh sulfur keratin-associated protein 5.3)
           (Keratin-associated protein 5-9) (Keratin-associated
           protein 5.9) (UHS KerB-like)
          Length = 238

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 27/102 (26%), Positives = 31/102 (30%)
 Frame = -2

Query: 478 SCLIIGDCRGSKGFCYQSTNKCLHTENSCAHPKNIEHNAIFQTFNHISPWRSLCGCACCF 299
           SC   G C GSKG C  S   C     SC   K                    CG +CC 
Sbjct: 53  SCSSCGSCGGSKGVC-GSCGGCKGGCGSCGGSK------------------GGCGSSCCV 93

Query: 298 P*SFRQTDVTK*PED*DKSCSNTSSSCVECKGRCNLPSNNCG 173
           P                  CS++  SC   KG C     + G
Sbjct: 94  P----------------VCCSSSCGSCGGSKGVCGFRGGSKG 119

>CRVP1_NAJAT (Q7T1K6) Natrin-1 precursor (Cysteine-rich venom protein 1)|
           (NA-CRVP1) (Protein G2a)
          Length = 239

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 496 CFGSRCIPGSGFSEHHTVAFPRAGNFPG--AAPFRVNPPDGTC 618
           C  S C P S +S  +   +  +GNF G  A P+++ PP G C
Sbjct: 147 CAVSYC-PSSAWSYFYVCQYCPSGNFQGKTATPYKLGPPCGDC 188

>DNJ5G_HUMAN (Q8N7S2) DnaJ homolog subfamily C member 5G (Gamma cysteine string|
           protein) (Gamma-CSP)
          Length = 189

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +1

Query: 163 FVILHSCYWEGYIALYILHNCC--WCCCSFYLSLLVIWLHPSV*KTTENSKRTRKGSSTG 336
           + IL+SC+++  + L  L  CC   CCC F    L         +  + + +++   S  
Sbjct: 116 YFILNSCWFKTLVILCTLLTCCCFCCCCCFCCGALKPPPEQDSGRKYQQNVQSQPPRSGA 175

Query: 337 *CD*KSEK 360
            CD +SE+
Sbjct: 176 KCDFRSEE 183

>PTNC_SHIFL (P69804) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 188 GKVTSPFT-FYTTAAGVAAAFISVFWSFGYIRLSERLRKTASAPAKAPPRADVIKSL 355
           G VT+ FT F   A GV    ++V     YI+LS +  + A APA+A    D+   L
Sbjct: 213 GFVTAAFTNFNLVALGVIGTVMAVL----YIQLSPKYNRVAGAPAQAAGNNDLDNEL 265

>PTNC_ECOLI (P69801) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 188 GKVTSPFT-FYTTAAGVAAAFISVFWSFGYIRLSERLRKTASAPAKAPPRADVIKSL 355
           G VT+ FT F   A GV    ++V     YI+LS +  + A APA+A    D+   L
Sbjct: 213 GFVTAAFTNFNLVALGVIGTVMAVL----YIQLSPKYNRVAGAPAQAAGNNDLDNEL 265

>PTNC_ECOL6 (P69802) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 188 GKVTSPFT-FYTTAAGVAAAFISVFWSFGYIRLSERLRKTASAPAKAPPRADVIKSL 355
           G VT+ FT F   A GV    ++V     YI+LS +  + A APA+A    D+   L
Sbjct: 213 GFVTAAFTNFNLVALGVIGTVMAVL----YIQLSPKYNRVAGAPAQAAGNNDLDNEL 265

>PTNC_ECO57 (P69803) Mannose permease IIC component (PTS system|
           mannose-specific EIIC component) (EIIC-Man) (EII-P-Man)
          Length = 266

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 188 GKVTSPFT-FYTTAAGVAAAFISVFWSFGYIRLSERLRKTASAPAKAPPRADVIKSL 355
           G VT+ FT F   A GV    ++V     YI+LS +  + A APA+A    D+   L
Sbjct: 213 GFVTAAFTNFNLVALGVIGTVMAVL----YIQLSPKYNRVAGAPAQAAGNNDLDNEL 265

>SYA_GLUOX (Q5FQ21) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 879

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 146 FVSAGILSFSTVVTGKVTSPFTFYTTAAGVAAA 244
           F +AG++ F  V TG+ T P++  TTA  V  A
Sbjct: 38  FTNAGMVPFKNVFTGQETRPYSRATTAQKVVRA 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,326,810
Number of Sequences: 219361
Number of extensions: 2026497
Number of successful extensions: 6516
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6511
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5938641176
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)