>TOIP2_RAT (Q6P752) Torsin-1A-interacting protein 2|
          Length = 578

 Score = 35.0 bits (79), Expect = 0.15
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = +2

Query: 50  PVDGAGGVQEGGRHVRRGGAAQLRGAEDQGTAGFALLPNSIDPHRQAGEG-----HSPSA 214
           P +GAG   E G H+    AA   GA++ G A   L  +S  P   AGEG     H  S+
Sbjct: 150 PTEGAGEGGEAGAHLESSCAALPVGADEGGRANAHLESSSAAPTEGAGEGGEADVHLESS 209

Query: 215 EHVP 226
             VP
Sbjct: 210 SAVP 213

>FER_THEMA (P46797) Ferredoxin|
          Length = 60

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 30  CIDCATCRWMAPEVFKRVDGMSAVAAQPSSEEQRTKALQALLSCPTASIHTDK 188
           CI C  C  + P+VF+  D   A   QP ++    K   A  SCPT +I  ++
Sbjct: 10  CIGCGVCENLCPDVFQLGDDGKAKVLQPETDLPCAK--DAADSCPTGAISVEE 60

>FER1_DESDN (P07485) Ferredoxin-1 (Ferredoxin I) (FdI)|
          Length = 59

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 18  VDHR-CIDCATCRWMAPEVFKRVDG--MSAVAAQPSSEEQRTKALQALLSCPTASI 176
           +DH  CI C +C  + PEVF  +DG   + V A  S+ E    A+ A   CP  +I
Sbjct: 4   IDHEECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAIDA---CPVEAI 56

>FAS2_RHOFA (P46374) Ferredoxin fas2|
          Length = 304

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
 Frame = +3

Query: 21  DHRCIDCATCRWMAPEVFKRV-DGMSAVAAQPSSEEQRTKALQALLSCPTASIHTDKPAK 197
           + RC     C  +APEVF++  DG   +     S +  +    A  SCP  +I  ++ A 
Sbjct: 7   ERRCFGSGQCVLVAPEVFEQSNDGTVTLLVDKPSPDNHSLVRAAARSCPATAIRFEENAM 66

Query: 198 DILQVQSTFPLPIDDDLPGV 257
                + ++     DDLP +
Sbjct: 67  RQEPTEFSY-----DDLPAL 81

>FER_THELI (P29604) Ferredoxin|
          Length = 59

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 30  CIDCATCRWMAPEVFKRVDGMSAVAAQPSSEEQRTKALQALLSCPTASI 176
           CI C  C  + P+VF+  D   A A    ++ +  K  +A  SCPT +I
Sbjct: 10  CIGCGVCASICPDVFEMDDDGKAKALVAETDLECAK--EAAESCPTGAI 56

>EX5B_CHLPN (Q9Z7G7) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)|
          Length = 1050

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = +3

Query: 261 LCGYHSEDSYGATSYLIIHPEGNIMVDSPR------YTPKLVDKIEKLGGARYMFLTHID 422
           L  Y S     AT Y ++  +GN++  SPR         KL   ++ +    Y  L H+ 
Sbjct: 608 LHSYISHHGLLATFYRVMTTQGNVLFSSPRGDLIFQEMEKLCGYLDTISSYPYHQLLHLK 667

Query: 423 DVADHRKWAERLKCERIIHSGDVVDIT 503
           + ++  +W E L         + + IT
Sbjct: 668 NFSETGRWEEELAISSYSEDLETLKIT 694

>FER1_STRGO (P18324) Ferredoxin-1 (Fd-1)|
          Length = 68

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 30  CIDCATCRWMAPEVFKRVDG--MSAVAAQPSSEEQRTKALQALLSCPTASI 176
           C+    C   AP VF + D   ++ + A+P++++ R  A +A   CP+ ++
Sbjct: 11  CVGAGLCALTAPGVFDQDDDGIVTVLTAEPAADDDRRTAREAGHLCPSGAV 61

>TOIP2_MOUSE (Q8BYU6) Torsin-1A-interacting protein 2|
          Length = 502

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
 Frame = +2

Query: 56  DGAGGVQEGGRHVRRGGAAQLRGAEDQGTAGFALL-PNSID----PHRQAGEGHSPS-AE 217
           +GAG   E   H+    AA   GA D+G AG  LL  +S D     H   G G+  S   
Sbjct: 152 EGAGDRGEADEHLESSSAAPTEGAGDRGEAGQELLAEDSTDGQSLGHSNTGPGNQDSLRR 211

Query: 218 HVPAP 232
            +P P
Sbjct: 212 RLPVP 216

>RX2_CHICK (Q9PVX0) Retinal homeobox protein Rx2 (cRax2)|
          Length = 317

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 24/66 (36%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
 Frame = +2

Query: 50  PVDGAGGVQE-----GGRHVRRGGAAQLRGAEDQGTAGFALLPNSIDPHRQAGEG--HSP 208
           P  GAG  +E     G RH    G A+   AE QG       P S  P   AG+G    P
Sbjct: 53  PDGGAGSAKEAADKRGPRHCLPKGPAEPPPAEHQGRFQEPYCPGSASPELPAGDGGDGKP 112

Query: 209 SAEHVP 226
           S E  P
Sbjct: 113 SDEEQP 118

>FZD6_MOUSE (Q61089) Frizzled 6 precursor (Frizzled-6) (Fz-6) (mFz6)|
          Length = 709

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 441 KWAERLKCERIIHSGDVVDITADVERKLTG 530
           +W E L+C R+ H  D V +T+    +L+G
Sbjct: 116 RWPEELECNRLPHCDDTVPVTSHPHTELSG 145

>MOAA_HALSA (Q9HST4) Probable molybdenum cofactor biosynthesis protein A|
          Length = 357

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 327 NIMVDSPR--YTPKLVDKIEKLGGARYMFLTHIDDVADHRKWA 449
           N++V  P   Y P++VD +    G R   + ++ ++A H +WA
Sbjct: 159 NMVVFEPTAGYVPEMVDHVAARDGLRLQLIEYMPELAGHPEWA 201

>ZBT7A_MOUSE (O88939) Zinc finger and BTB domain-containing protein 7A|
           (Leukemia/lymphoma-related factor)
          Length = 565

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 21/62 (33%), Positives = 23/62 (37%)
 Frame = +2

Query: 32  HRLRHLPVDGAGGVQEGGRHVRRGGAAQLRGAEDQGTAGFALLPNSIDPHRQAGEGHSPS 211
           H  RHL  DG  GV       RRG   ++RG      AG    P   D  R   E H   
Sbjct: 474 HLHRHLKKDGCNGVPS-----RRGRKPRVRGVPPDVPAGAGAPPGLPDAPRNGQEKHFKD 528

Query: 212 AE 217
            E
Sbjct: 529 EE 530

>PER23_ARATH (O80912) Peroxidase 23 precursor (EC 1.11.1.7) (Atperox P23)|
           (ATP34)
          Length = 349

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 423 DVADHRKWAERLKCERIIHSGDVVDITADVERKLTGSGPW 542
           DV D  K A    C R +   D++ I + +   L+G GPW
Sbjct: 107 DVIDRMKAAIERACPRTVSCADIITIASQISVLLSG-GPW 145

>CAD23_RAT (P58365) Cadherin-23 precursor (Otocadherin)|
          Length = 3317

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
 Frame = +3

Query: 168  ASIHTDKPAKDILQVQS--TFPLPIDDDLPGVY---LCGYHSEDSYGATSYLIIHPEGNI 332
            A +  + PA   L V +     L  D+D+  V    L G HS+      S  ++     +
Sbjct: 1964 AEVMENSPAGTPLTVLNGPILALDADEDVYAVVTYQLLGTHSDLFVIDNSTGVVTVRSGV 2023

Query: 333  MVDSPRYTPK------LVDKIEKLGGARYMFLTHIDD 425
            ++D   ++P       L + + +L G  Y+F+T +DD
Sbjct: 2024 IIDREAFSPPFLELLLLAEDVGQLNGTAYLFITILDD 2060

>Y2443_MYCLE (P54138) Hypothetical glycosyl transferase ML2443 (EC 2.-.-.-)|
          Length = 428

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +3

Query: 174 IHTDKPAKDILQVQSTFPLPIDDDLPGVYLCGYHSEDSYGATSYLIIHPEGNIMVDSPRY 353
           ++TD  A+ ++ +    P  ID   PGV L  +   D   A + L +  +GN++    R 
Sbjct: 167 VNTDDEARQLISIHRADPAKIDVAHPGVDLDMFRPGDRRAARAALGLPLDGNVVAFVGRI 226

Query: 354 TP 359
            P
Sbjct: 227 QP 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,681,743
Number of Sequences: 219361
Number of extensions: 1912711
Number of successful extensions: 6684
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6677
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4757699440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)