Clone Information

BLAST Search Result

Clone Name	bags19m03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AP2M1_RAT (P84092) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-...	172	5e-43
2	AP2M1_MOUSE (P84091) AP-2 complex subunit mu-1 (Adaptin mu-1) (A...	172	5e-43
3	AP2M1_HUMAN (Q96CW1) AP-2 complex subunit mu-1 (Adaptin mu-1) (A...	172	5e-43
4	AP2M_DICDI (P54672) AP-2 complex subunit mu (Clathrin coat assem...	172	9e-43
5	AP2M_CAEEL (P35603) AP-2 complex subunit mu (Clathrin coat assem...	169	4e-42
6	AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related ...	153	3e-37
7	AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related ...	152	7e-37
8	AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assem...	139	6e-33
9	AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related ...	137	2e-32
10	AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related ...	134	2e-31
11	AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (...	130	4e-30
12	AP1M1_SCHPO (Q9HFE5) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (...	122	1e-27
13	AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin c...	105	1e-22
14	AP4M1_MOUSE (Q9JKC7) AP-4 complex subunit mu-1 (Adapter-related ...	78	2e-14
15	AP4M1_HUMAN (O00189) AP-4 complex subunit mu-1 (Adapter-related ...	75	1e-13
16	AP4M1_RAT (Q2PWT8) AP-4 complex subunit mu-1 (Adapter-related pr...	74	2e-13
17	AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related pr...	66	9e-11
18	AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related ...	66	9e-11
19	AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related ...	66	9e-11
20	AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related pr...	65	1e-10
21	AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related ...	65	1e-10
22	AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related ...	65	1e-10
23	AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assem...	60	6e-09
24	AP2M_YEAST (Q99186) AP-2 complex subunit mu (Clathrin coat assem...	54	3e-07
25	APM2_YEAST (P38700) Adaptin medium chain homolog APM2	40	0.007
26	AP3M_ASHGO (Q750L8) AP-3 complex subunit mu (Adapter-related pro...	38	0.025
27	AOX1_CANAL (O93853) Alternative oxidase 1, mitochondrial precurs...	33	0.62
28	ICAM1_MACMU (Q5NKV6) Intercellular adhesion molecule 1 precursor...	31	3.1
29	CARA_BACHK (Q6HES7) Carbamoyl-phosphate synthase small chain (EC...	30	6.9
30	CARA_BACCZ (Q636D9) Carbamoyl-phosphate synthase small chain (EC...	30	6.9
31	CARA_BACCR (Q819S2) Carbamoyl-phosphate synthase small chain (EC...	30	6.9
32	CARA_BACC1 (Q732I2) Carbamoyl-phosphate synthase small chain (EC...	30	6.9
33	CARA_BACAN (Q81WF1) Carbamoyl-phosphate synthase small chain (EC...	30	6.9
34	ACSL1_RAT (P18163) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1...	29	9.0
35	TOPK_MOUSE (Q9JJ78) T-lymphokine-activated killer cell-originate...	29	9.0
36	SYC_PYRAB (Q9UYV2) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...	29	9.0

>AP2M1_RAT (P84092) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)|
           (Clathrin coat assembly protein AP50) (Clathrin
           coat-associated protein AP50) (Plasma membrane adaptor
           AP-2 50 kDa protein) (Clathrin assembly protein complex
           2 medium chain)
          Length = 435

 Score =  172 bits (437), Expect = 5e-43
 Identities = 86/197 (43%), Positives = 125/197 (63%)
 Frame = +1

Query: 7   IYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXX 186
           ++  N +G+VLI+R+YRDD+G N VDAFR++++  ++    PV  I   SF +++     
Sbjct: 5   LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIW 64

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                         F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN
Sbjct: 65  LAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQN 123

Query: 367 LSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVES 546
                LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ES
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLES 180

Query: 547 VNLLMSSKGSVLRCDVT 597
           VNLLMS +G VL   V+
Sbjct: 181 VNLLMSPQGQVLSAHVS 197

to top

>AP2M1_MOUSE (P84091) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)|
           (Clathrin coat assembly protein AP50) (Clathrin
           coat-associated protein AP50) (Plasma membrane adaptor
           AP-2 50 kDa protein) (Clathrin assembly protein complex
           2 medium chain)
          Length = 435

 Score =  172 bits (437), Expect = 5e-43
 Identities = 86/197 (43%), Positives = 125/197 (63%)
 Frame = +1

Query: 7   IYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXX 186
           ++  N +G+VLI+R+YRDD+G N VDAFR++++  ++    PV  I   SF +++     
Sbjct: 5   LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIW 64

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                         F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN
Sbjct: 65  LAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQN 123

Query: 367 LSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVES 546
                LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ES
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLES 180

Query: 547 VNLLMSSKGSVLRCDVT 597
           VNLLMS +G VL   V+
Sbjct: 181 VNLLMSPQGQVLSAHVS 197

to top

>AP2M1_HUMAN (Q96CW1) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)|
           (Clathrin coat assembly protein AP50) (Clathrin
           coat-associated protein AP50) (Plasma membrane adaptor
           AP-2 50 kDa protein) (HA2 50 kDa subunit) (Clathrin
           assembly protein co
          Length = 435

 Score =  172 bits (437), Expect = 5e-43
 Identities = 86/197 (43%), Positives = 125/197 (63%)
 Frame = +1

Query: 7   IYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXX 186
           ++  N +G+VLI+R+YRDD+G N VDAFR++++  ++    PV  I   SF +++     
Sbjct: 5   LFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIW 64

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                         F+F+ +   +  +YFG    E+ I+NNFVLIYELLDEI+DFGYPQN
Sbjct: 65  LAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQN 123

Query: 367 LSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVES 546
                LK +ITQ+G++S   +K     +   T QVTG +GWRREG+ Y++NE+FLD++ES
Sbjct: 124 SETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLES 180

Query: 547 VNLLMSSKGSVLRCDVT 597
           VNLLMS +G VL   V+
Sbjct: 181 VNLLMSPQGQVLSAHVS 197

to top

>AP2M_DICDI (P54672) AP-2 complex subunit mu (Clathrin coat assembly protein|
           AP50) (Clathrin coat-associated protein AP50) (Plasma
           membrane adaptor AP-2 50 kDa protein) (Clathrin assembly
           protein complex 2 medium chain)
          Length = 439

 Score =  172 bits (435), Expect = 9e-43
 Identities = 86/199 (43%), Positives = 129/199 (64%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXX 180
           +A++ +N +G+VLI+R+YRDD+   + +AFR+ ++  +E  + PV+ IG  SF+Y++   
Sbjct: 3   SALFLMNGKGEVLISRIYRDDISRGVGNAFRLEVIGVQETRS-PVKLIGSTSFMYIKVGN 61

Query: 181 XXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP 360
                           F+ + + V +FKSYF    DED+IRNNFVL+YELLDEI+DFGYP
Sbjct: 62  IYIVGVSRQNVNACMVFEVLHQLVDIFKSYFDN-LDEDSIRNNFVLVYELLDEILDFGYP 120

Query: 361 QNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIV 540
           QN S ++LKLYITQ   +     K     +   T+  TG   WR   + YK+NE+++D+V
Sbjct: 121 QNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIHATGTTPWRTPDIKYKRNELYIDVV 180

Query: 541 ESVNLLMSSKGSVLRCDVT 597
           ESVNLLMS++G++LR DV+
Sbjct: 181 ESVNLLMSAEGNILRADVS 199

to top

>AP2M_CAEEL (P35603) AP-2 complex subunit mu (Clathrin coat assembly protein|
           AP50) (Clathrin coat-associated protein AP50) (Plasma
           membrane adaptor AP-2 50 kDa protein) (Clathrin assembly
           protein complex 2 medium chain) (Dumpy protein 23)
          Length = 441

 Score =  169 bits (429), Expect = 4e-42
 Identities = 88/203 (43%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
 Frame = +1

Query: 7   IYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXX 186
           ++  N +G+VLI+R+YRDDV  N VDAFR++++  ++    PV  +   SF +++     
Sbjct: 5   LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMARTSFFHVKRGNVW 64

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                         F+F+       +SYFG   +E+ ++NNFVLIYELLDEI+DFGYPQN
Sbjct: 65  ICAVTRQNVNAAMVFEFLKRFADTMQSYFG-KLNEENVKNNFVLIYELLDEILDFGYPQN 123

Query: 367 LSPEILKLYITQEGVRSPFSSKPSDKPVP-------NATLQVTGAVGWRREGLVYKKNEV 525
             P +LK +ITQ+GVR+      +D PVP         T QVTG +GWRREG+ Y++NE+
Sbjct: 124 TDPGVLKTFITQQGVRT------ADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNEL 177

Query: 526 FLDIVESVNLLMSSKGSVLRCDV 594
           FLD++E VNLLM+ +G VL   V
Sbjct: 178 FLDVIEYVNLLMNQQGQVLSAHV 200

to top

>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex|
           1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex
           AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1
           subunit) (Clathrin assembly protein assembly protein
           complex 1
          Length = 422

 Score =  153 bits (387), Expect = 3e-37
 Identities = 87/199 (43%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTC-PVRQIGGCSFLYMRXX 177
           +A+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F++++  
Sbjct: 3   SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 62

Query: 178 XXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGY 357
                            F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGY
Sbjct: 63  NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGY 121

Query: 358 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDI 537
           PQ    +IL+ YITQEG         +  P P AT  VT AV WR EG+ Y+KNEVFLD+
Sbjct: 122 PQTTDSKILQEYITQEG-----HKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDV 174

Query: 538 VESVNLLMSSKGSVLRCDV 594
           +ESVNLL+S+ G+VLR ++
Sbjct: 175 IESVNLLVSANGNVLRSEI 193

to top

>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex|
           1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex
           AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1
           subunit) (Clathrin assembly protein assembly protein
           complex 1
          Length = 422

 Score =  152 bits (384), Expect = 7e-37
 Identities = 86/199 (43%), Positives = 122/199 (61%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTC-PVRQIGGCSFLYMRXX 177
           +A+Y L+L+G VLI R YR DV  + V+ F   +M+ +E G   P+   GG  F++++  
Sbjct: 3   SAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHN 62

Query: 178 XXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGY 357
                            F F+ + V +F  YF    +E++IR+NFV+IYELLDE+MDFGY
Sbjct: 63  NLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGY 121

Query: 358 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDI 537
           PQ    +IL+ YITQEG         +  P P AT  VT AV WR EG+ Y+KNEVFLD+
Sbjct: 122 PQTTDSKILQEYITQEG-----HKLETGAPRPPAT--VTNAVSWRSEGIKYRKNEVFLDV 174

Query: 538 VESVNLLMSSKGSVLRCDV 594
           +E+VNLL+S+ G+VLR ++
Sbjct: 175 IEAVNLLVSANGNVLRSEI 193

to top

>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein|
           AP47) (Clathrin coat-associated protein AP47) (Golgi
           adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit)
           (Clathrin assembly protein assembly protein complex 1
           medium chain) (Uncoor
          Length = 422

 Score =  139 bits (350), Expect = 6e-33
 Identities = 74/199 (37%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTC-PVRQIGGCSFLYMRXX 177
           +A++ L+L+G  +I+R YR D+    +D F   +M+ +E G+  PV      +F++++  
Sbjct: 4   SAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFIKHT 63

Query: 178 XXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGY 357
                              F+ + V +F  YF    +E+++R+NFV+IYELLDE+MDFG+
Sbjct: 64  NIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDV-EEESVRDNFVVIYELLDEMMDFGF 122

Query: 358 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDI 537
           PQ     IL+ YITQEG +   + +P         + VT AV WR EG+ Y+KNEVFLD+
Sbjct: 123 PQTTESRILQEYITQEGQKLISAPRPP--------MAVTNAVSWRSEGIKYRKNEVFLDV 174

Query: 538 VESVNLLMSSKGSVLRCDV 594
           +ESVN+L S+ G+VL+ ++
Sbjct: 175 IESVNMLASANGTVLQSEI 193

to top

>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex|
           1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex
           AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2
           subunit) (Clathrin assembly protein assembly protein
           complex 1
          Length = 423

 Score =  137 bits (345), Expect = 2e-32
 Identities = 76/199 (38%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGT-CPVRQIGGCSFLYMRXX 177
           +A++ L+++G  LI+R Y+ DV    +D F   +MQ +E G   P+   G   FL+++  
Sbjct: 4   SAVFILDVKGKPLISRNYKGDVPMTEIDHFMPLLMQREEEGVLAPLLSHGRVHFLWIKHS 63

Query: 178 XXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGY 357
                            + F+ + V +F  YF    +E++IR+NFV++Y+LLDE+MDFG+
Sbjct: 64  NLYLVATTLKNANASLVYSFLYKTVEVFCEYFK-ELEEESIRDNFVIVYDLLDELMDFGF 122

Query: 358 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDI 537
           PQ    +IL+ YITQ+G +   + K    P       VT AV WR EG+ YKKNEVF+D+
Sbjct: 123 PQTTDSKILQEYITQQGNKLE-TGKSRVPPT------VTNAVSWRSEGIKYKKNEVFIDV 175

Query: 538 VESVNLLMSSKGSVLRCDV 594
           +ESVNLL+++ GSVL  ++
Sbjct: 176 IESVNLLVNANGSVLLSEI 194

to top

>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex|
           1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex
           AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2
           subunit) (Clathrin assembly protein assembly protein
           complex 1
          Length = 423

 Score =  134 bits (338), Expect = 2e-31
 Identities = 73/199 (36%), Positives = 118/199 (59%), Gaps = 1/199 (0%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGT-CPVRQIGGCSFLYMRXX 177
           +A++ L+++G  LI+R Y+ DV  + ++ F   ++Q +E G   P+   G   FL+++  
Sbjct: 4   SAVFILDVKGKPLISRNYKGDVAMSKIEHFMPLLVQREEEGALAPLLSHGQVHFLWIKHS 63

Query: 178 XXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGY 357
                            + F+ + + +F  YF    +E++IR+NFV++YELLDE+MDFG+
Sbjct: 64  NLYLVATTSKNANASLVYSFLYKTIEVFCEYFK-ELEEESIRDNFVIVYELLDELMDFGF 122

Query: 358 PQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDI 537
           PQ    +IL+ YITQ+  +   + K    P       VT AV WR EG+ YKKNEVF+D+
Sbjct: 123 PQTTDSKILQEYITQQSNKLE-TGKSRVPPT------VTNAVSWRSEGIKYKKNEVFIDV 175

Query: 538 VESVNLLMSSKGSVLRCDV 594
           +ESVNLL+++ GSVL  ++
Sbjct: 176 IESVNLLVNANGSVLLSEI 194

to top

>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin|
           assembly protein complex 1 medium chain) (Clathrin coat
           assembly protein AP54) (Clathrin coat-associated protein
           AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa
           subunit)
          Length = 475

 Score =  130 bits (326), Expect = 4e-30
 Identities = 77/204 (37%), Positives = 115/204 (56%), Gaps = 6/204 (2%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTC--PVRQIGGCSFLYMRX 174
           +A+YF +  G  L++R YRDD+  + +D F + +   +E      P     G  +L+++ 
Sbjct: 3   SAVYFCDHNGKPLLSRRYRDDIPLSAIDKFPILLSDLEEQSNLIPPCLNHNGLEYLFIQH 62

Query: 175 XXXXXXXXXXXXXXXXCA-FKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDF 351
                            A F F+ + V +   Y   T +E++IR+NFV+IYELLDE+MD+
Sbjct: 63  NDLYVVAIVTSLSANAAAIFTFLHKLVEVLSDYLK-TVEEESIRDNFVIIYELLDEVMDY 121

Query: 352 GYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNAT---LQVTGAVGWRREGLVYKKNE 522
           G PQ    ++LK YITQ+     F    S K   NAT   + +T +V WR EG+ +KKNE
Sbjct: 122 GIPQITETKMLKQYITQKS----FKLVKSAKKKRNATRPPVALTNSVSWRPEGITHKKNE 177

Query: 523 VFLDIVESVNLLMSSKGSVLRCDV 594
            FLDIVES+N+LM+ KG VLR ++
Sbjct: 178 AFLDIVESINMLMTQKGQVLRSEI 201

to top

>AP1M1_SCHPO (Q9HFE5) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin|
           assembly protein complex 1 medium chain)
          Length = 426

 Score =  122 bits (305), Expect = 1e-27
 Identities = 72/201 (35%), Positives = 115/201 (57%), Gaps = 3/201 (1%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAF---RMHIMQTKELGTCPVRQIGGCSFLYMR 171
           +AI+ LNL+G V+I+R YR D+  ++V+ F   +  + + +   T P     G +++Y+ 
Sbjct: 3   SAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFST-PCLTHEGINYIYIH 61

Query: 172 XXXXXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDF 351
                                F+ +   +F  YF     E++IR+NFVL+YELLDEIMDF
Sbjct: 62  HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFK-ELQEESIRDNFVLVYELLDEIMDF 120

Query: 352 GYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFL 531
           G+PQ    +IL+ YITQ       +S    K  P   + +T A+ WR EG+ Y+KNEVFL
Sbjct: 121 GFPQTTETKILQEYITQ-------TSNTVKKHAP-PPIAMTNAISWRSEGIHYRKNEVFL 172

Query: 532 DIVESVNLLMSSKGSVLRCDV 594
           D++ESVNL+ ++ G+V++ ++
Sbjct: 173 DVIESVNLIAAADGTVIQSEI 193

to top

>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly|
           protein AP50) (Clathrin coat-associated protein AP50)
           (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin
           assembly protein complex 2 medium chain)
          Length = 446

 Score =  105 bits (262), Expect = 1e-22
 Identities = 58/204 (28%), Positives = 108/204 (52%), Gaps = 5/204 (2%)
 Frame = +1

Query: 1   AAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXX 180
           + ++  NL+GD LI + +R D+  ++ + FR+ I+   +    P+  IG  +++Y +   
Sbjct: 3   SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTDYRH-PIVSIGSSTYIYTKHED 61

Query: 181 XXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP 360
                            +F+   +     YFG   +E+ +++N   I+ELLDE++D+G  
Sbjct: 62  LYVVAITKGNPNVMIVLEFLESLIQDLTHYFG-KLNENTVKDNVSFIFELLDEMIDYGII 120

Query: 361 QNLSPEILKLYITQEGVRSPFSS-----KPSDKPVPNATLQVTGAVGWRREGLVYKKNEV 525
           Q   P+ L   ++   V+   ++       S +     + ++ G+V WRR G+ Y+KN +
Sbjct: 121 QTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSI 180

Query: 526 FLDIVESVNLLMSSKGSVLRCDVT 597
           ++DIVE +NLL+SS G+VLR DV+
Sbjct: 181 YIDIVERMNLLISSTGNVLRSDVS 204

to top

>AP4M1_MOUSE (Q9JKC7) AP-4 complex subunit mu-1 (Adapter-related protein complex|
           4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter
           complex mu subunit) (Mu-adaptin-related protein 2)
           (mu-ARP2) (mu4)
          Length = 449

 Score = 77.8 bits (190), Expect = 2e-14
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 13/208 (6%)
 Frame = +1

Query: 10  YFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQI-GGCSFLYMRXXXXX 186
           + L+ +GD LI + +R D GG  V       +     G  PV    G   F+++R     
Sbjct: 6   FILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHGDRHFIHIRHSGLY 65

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                          + +     L   Y G + +E  I  N  L+YELLDE++D+GY Q 
Sbjct: 66  LVATTLENVSPFSLLELLSRLATLLGDYCG-SLNEGTISRNVALVYELLDEVLDYGYVQT 124

Query: 367 LSPEILKLYITQEGVRS-PFS-----------SKPSDKPVPNATLQVTGAVGWRREGLVY 510
            S E+L+ +I  E V S PFS           ++     V  ++      +  R +    
Sbjct: 125 TSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQNKVAPSSAASRPVLSSRSDQS-- 182

Query: 511 KKNEVFLDIVESVNLLMSSKGSVLRCDV 594
           +KNEVFLD+VE +++L++S GS+L+ DV
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDV 210

to top

>AP4M1_HUMAN (O00189) AP-4 complex subunit mu-1 (Adapter-related protein complex|
           4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter
           complex mu subunit) (Mu-adaptin-related protein 2)
           (mu-ARP2) (mu4)
          Length = 453

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 13/208 (6%)
 Frame = +1

Query: 10  YFLNLRGDVLINRLYRDDVGG-NMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXX 186
           + L+ +GD LI + +R D GG ++ + F   +       +  V    G  F+++R     
Sbjct: 6   FILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGDESPVVMHHHGRHFIHIRHSGLY 65

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                          + +     L   Y G +  E  I  N  L+YELLDE++D+GY Q 
Sbjct: 66  LVVTTSENVSPFSLLELLSRLATLLGDYCG-SLGEGTISRNVALVYELLDEVLDYGYVQT 124

Query: 367 LSPEILKLYITQEGVRS-PFS-----------SKPSDKPVPNATLQVTGAVGWRREGLVY 510
            S E+L+ +I  E V S PFS           ++     V  ++      +  R +    
Sbjct: 125 TSTEMLRNFIQTEAVVSKPFSLFDLSSVGLFGAETQQSKVAPSSAASRPVLSSRSDQS-- 182

Query: 511 KKNEVFLDIVESVNLLMSSKGSVLRCDV 594
           +KNEVFLD+VE +++L++S GS+L+ DV
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDV 210

to top

>AP4M1_RAT (Q2PWT8) AP-4 complex subunit mu-1 (Adapter-related protein complex|
           4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter
           complex mu subunit) (Mu-adaptin-related protein 2)
           (mu-ARP2) (mu4)
          Length = 453

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 13/208 (6%)
 Frame = +1

Query: 10  YFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQI-GGCSFLYMRXXXXX 186
           + L+ +GD LI + +R D GG  V       +     G  PV        F+++R     
Sbjct: 6   FILSSKGDPLIYKDFRGDSGGRDVAELFYRKLTGLPGGESPVVMYHDDRHFIHIRHSGLY 65

Query: 187 XXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQN 366
                          + +     L   Y G + +E  I  N  L+YELLDE++D+GY Q 
Sbjct: 66  LVATTSENVSPFSLLELLSRLATLLGDYCG-SLNEGTISRNVALVYELLDEVLDYGYVQT 124

Query: 367 LSPEILKLYI-TQEGVRSPFS-----------SKPSDKPVPNATLQVTGAVGWRREGLVY 510
            S ++L+ +I T+  V  PFS           ++     V  ++      +  R +    
Sbjct: 125 TSTDMLRNFIQTEAAVSKPFSLFDLSSVGLFGAETQQNRVAPSSAASRPVLSSRSDQS-- 182

Query: 511 KKNEVFLDIVESVNLLMSSKGSVLRCDV 594
           +KNEVFLD+VE +++L++S GS+L+ DV
Sbjct: 183 QKNEVFLDVVERLSVLIASNGSLLKVDV 210

to top

>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex|
           3 mu-2 subunit) (Clathrin coat assembly protein AP47
           homolog 2) (Clathrin coat-associated protein AP47
           homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2)
           (HA1 47 kDa subu
          Length = 418

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
 Frame = +1

Query: 4   AIYFLNLRGDVLINRLYRDDVGGNMVDAF-RMHIMQTKELGTCPVRQIGGCSFLYMRXXX 180
           +++ +N  GD+ + + ++  V  ++ D F       T+     PV        L +    
Sbjct: 4   SLFLINSAGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63

Query: 181 XXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP 360
                            +F+   V  F+ YFG    E  I++N V++YE+L+E++D G+P
Sbjct: 64  IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFG-VCSEPVIKDNVVVVYEVLEEMLDNGFP 122

Query: 361 QNLSPEILKLYIT-----QEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEV 525
                 ILK  I      +  V +   S      +P   L V   V WRR G+ Y  NE 
Sbjct: 123 LATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSV---VPWRRTGVKYTNNEA 179

Query: 526 FLDIVESVNLLMSSKGSVLRCDV 594
           + D+VE ++ ++   GS +  ++
Sbjct: 180 YFDVVEEIDAIIDKSGSTVTAEI 202

to top

>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex|
           3 mu-2 subunit) (Clathrin coat assembly protein AP47
           homolog 2) (Clathrin coat-associated protein AP47
           homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2)
           (HA1 47 kDa su
          Length = 418

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
 Frame = +1

Query: 4   AIYFLNLRGDVLINRLYRDDVGGNMVDAF-RMHIMQTKELGTCPVRQIGGCSFLYMRXXX 180
           +++ +N  GD+ + + ++  V  ++ D F       T+     PV        L +    
Sbjct: 4   SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63

Query: 181 XXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP 360
                            +F+   V  F+ YFG    E  I++N V++YE+L+E++D G+P
Sbjct: 64  IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFG-VCSEPVIKDNVVVVYEVLEEMLDNGFP 122

Query: 361 QNLSPEILKLYIT-----QEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEV 525
                 ILK  I      +  V +   S      +P   L V   V WRR G+ Y  NE 
Sbjct: 123 LATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSV---VPWRRTGVKYTNNEA 179

Query: 526 FLDIVESVNLLMSSKGSVLRCDV 594
           + D+VE ++ ++   GS +  ++
Sbjct: 180 YFDVVEEIDAIIDKSGSTVTAEI 202

to top

>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex|
           3 mu-2 subunit) (Clathrin coat assembly protein AP47
           homolog 2) (Clathrin coat-associated protein AP47
           homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2)
           (HA1 47 kDa su
          Length = 418

 Score = 65.9 bits (159), Expect = 9e-11
 Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
 Frame = +1

Query: 4   AIYFLNLRGDVLINRLYRDDVGGNMVDAF-RMHIMQTKELGTCPVRQIGGCSFLYMRXXX 180
           +++ +N  GD+ + + ++  V  ++ D F       T+     PV        L +    
Sbjct: 4   SLFLINSSGDIFLEKHWKSVVSRSVCDYFFEAQERATEAENVPPVIPTPHHYLLSVYRHK 63

Query: 181 XXXXXXXXXXXXXXCAFKFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP 360
                            +F+   V  F+ YFG    E  I++N V++YE+L+E++D G+P
Sbjct: 64  IFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFG-VCSEPVIKDNVVVVYEVLEEMLDNGFP 122

Query: 361 QNLSPEILKLYIT-----QEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEV 525
                 ILK  I      +  V +   S      +P   L V   V WRR G+ Y  NE 
Sbjct: 123 LATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSV---VPWRRTGVKYTNNEA 179

Query: 526 FLDIVESVNLLMSSKGSVLRCDV 594
           + D++E ++ ++   GS +  ++
Sbjct: 180 YFDVIEEIDAIIDKSGSTITAEI 202

to top

>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex|
           3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex
           mu3A subunit) (Clathrin coat assembly protein AP47
           homolog 1) (Clathrin coat-associated protein AP47
           homolog 1) (Golgi ada
          Length = 418

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
 Frame = +1

Query: 232 KFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGV 411
           +F+      F+ YFG    E AI++N V++YELL+E++D G+P      ILK  I    +
Sbjct: 81  EFLHRVADTFQDYFGEC-SEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTI 139

Query: 412 -RSPFSSKPSDKPVPNA--TLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVL 582
            RS  +S      V +   T Q++  + WRR G+ Y  NE + D+VE ++ ++   GS +
Sbjct: 140 LRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTV 198

Query: 583 RCDV 594
             ++
Sbjct: 199 FAEI 202

to top

>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex|
           3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex
           mu3A subunit)
          Length = 418

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
 Frame = +1

Query: 232 KFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGV 411
           +F+      F+ YFG    E AI++N V++YELL+E++D G+P      ILK  I    +
Sbjct: 81  EFLHRVADTFQDYFGEC-SEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTI 139

Query: 412 -RSPFSSKPSDKPVPNA--TLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVL 582
            RS  +S      V +   T Q++  + WRR G+ Y  NE + D+VE ++ ++   GS +
Sbjct: 140 LRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTV 198

Query: 583 RCDV 594
             ++
Sbjct: 199 FAEI 202

to top

>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex|
           3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex
           mu3A subunit)
          Length = 418

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/124 (32%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
 Frame = +1

Query: 232 KFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGV 411
           +F+      F+ YFG    E AI++N V++YELL+E++D G+P      ILK  I    +
Sbjct: 81  EFLHRVADTFQDYFGEC-SEAAIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTI 139

Query: 412 -RSPFSSKPSDKPVPNA--TLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVL 582
            RS  +S      V +   T Q++  + WRR G+ Y  NE + D+VE ++ ++   GS +
Sbjct: 140 LRSVVNSITGSSNVGDTLPTGQLSN-IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTV 198

Query: 583 RCDV 594
             ++
Sbjct: 199 FAEI 202

to top

>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein|
           AP47 homolog) (Clathrin coat-associated protein AP47
           homolog) (Golgi adaptor AP-1 47 kDa protein homolog)
           (HA1 47 kDa subunit homolog) (Clathrin assembly protein
           assembly protein
          Length = 418

 Score = 59.7 bits (143), Expect = 6e-09
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
 Frame = +1

Query: 232 KFVVEAVALFKSYFGGTFDEDAIRNNFVLIYELLDEIMDFGYP----QNLSPEILK-LYI 396
           +F+       + YFG    E +I++N V++YELL+E++D G+P     N+  E++K   I
Sbjct: 81  EFLHRVAETLQDYFGEC-SEASIKDNVVIVYELLEEMLDNGFPLATESNILKELIKPPTI 139

Query: 397 TQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGS 576
            +  V S   S      +P   L     + WRR G+ Y  NE + D+ E ++ ++   GS
Sbjct: 140 LRSVVNSITGSSNVGDQLPTGQL---SNIPWRRVGVKYTNNEAYFDVTEEIDAIIDKSGS 196

Query: 577 VLRCDV 594
            +  ++
Sbjct: 197 TVFAEI 202

to top

>AP2M_YEAST (Q99186) AP-2 complex subunit mu (Clathrin coat assembly protein|
           AP50) (Clathrin coat-associated protein AP50) (Plasma
           membrane adaptor AP-2 50 kDa protein) (Clathrin assembly
           protein complex 2 medium chain) (Adaptin medium chain
           APM4)
          Length = 491

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 45/226 (19%), Positives = 101/226 (44%), Gaps = 39/226 (17%)
 Frame = +1

Query: 25  RGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFLYMRXXXXXXX---X 195
           RG++++N+ +++ +  ++ D FR+ ++   ++ + PV  +G  +F ++R           
Sbjct: 11  RGELVLNKFFKNSLKRSISDIFRVQVINNLDVRS-PVLTLGSTTFHHIRSRHGDNLWLVT 69

Query: 196 XXXXXXXXXCAFKFVVEAVALFKSYFGGTFD-EDAIRNNFVLIYELLDEIMDF-GYP--Q 363
                      ++F+ +  A+  +Y     D E+A++  F++++E+LD ++   G P   
Sbjct: 70  ITRSNANSAAIWEFLYKLDAVMNAY---RLDREEALKEEFMIVHEMLDIMLGGNGIPIDT 126

Query: 364 NLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVG------------------- 486
            L+  I ++ +            P    V +++   T + G                   
Sbjct: 127 ELNSVIAQMSVKPVRNMGGLLDSPDGNDVLSSSSSPTSSAGELHFPKFLTKRSSSFLGQG 186

Query: 487 -------------WRREGLVYKKNEVFLDIVESVNLLMSSKGSVLR 585
                        WR +G+++KK+EVFL + E +N+L+S  GS+L+
Sbjct: 187 DSTSDFYDNNKITWRPKGIIHKKDEVFLYVNERINILVSRDGSILK 232

to top

>APM2_YEAST (P38700) Adaptin medium chain homolog APM2|
          Length = 605

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 16/35 (45%), Positives = 23/35 (65%)
 Frame = +1

Query: 481 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLR 585
           + WR +G+ Y KNE FLD++E V  LM  +  V+R
Sbjct: 258 ISWRTKGIHYAKNEFFLDVIERVQYLMDFEKGVIR 292



 Score = 37.0 bits (84), Expect = 0.043
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 235 FVVEAVALFKSYFG-GTFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYI 396
           F+ +   L + YF      ++ I +N +L+ EL+DE +DFG  Q   P I+K YI
Sbjct: 82  FLEQFYHLLQKYFEIEVLTKNVILDNILLVLELIDECIDFGIVQVTDPSIIKDYI 136

to top

>AP3M_ASHGO (Q750L8) AP-3 complex subunit mu (Adapter-related protein complex 3|
           mu subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A
           subunit)
          Length = 411

 Score = 37.7 bits (86), Expect = 0.025
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 445 PVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVL 582
           PV    ++    V WR     Y  NE+++D+VE+VN  +  KGS L
Sbjct: 128 PVATGKVEAGQTVPWRTADCRYVNNEIYVDLVETVNATLRQKGSSL 173

to top

>AOX1_CANAL (O93853) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 379

 Score = 33.1 bits (74), Expect = 0.62
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +1

Query: 412 RSPFSSK--PSDKPVPNATLQVTGAVGWRREGL 504
           R+PF+ K   SDKP PN  L VT   GW R+ L
Sbjct: 345 RNPFALKIKDSDKPQPNYNLDVTRPQGWERKDL 377

to top

>ICAM1_MACMU (Q5NKV6) Intercellular adhesion molecule 1 precursor (ICAM-1)|
          Length = 532

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
 Frame = -1

Query: 300 DSIFIKSSTKVGLEE--------GHCLHNKLESTRN-ISIAANHDHNVNITDPHVKEGT 151
           +S+  K+S KV  EE        G  L N+ + TR  ++I +    NVN+T P V EGT
Sbjct: 268 NSLSAKASVKVTAEEEGTQQLLCGVMLGNQTQETRQTVTIYSFPAPNVNLTKPEVSEGT 326

to top

>CARA_BACHK (Q6HES7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 HNKLESTRNISIAANHDHNVNITDPHVKEGTASYLSNRACTKLFCLHNVHPECINHISPD 64
           H K  ST++   +    H V + D  +K G    L+ R C  +   +N   E I  +SPD
Sbjct: 152 HVKRVSTKDPYPSPGRGHRVVLVDFGMKHGILRELNKRDCDVIVVPYNTTAEEILRLSPD 211

Query: 63  IVAV---*AIDEDVPAKVE 16
            + +       +DVP  +E
Sbjct: 212 GIMLSNGPGDPKDVPEAIE 230

to top

>CARA_BACCZ (Q636D9) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 HNKLESTRNISIAANHDHNVNITDPHVKEGTASYLSNRACTKLFCLHNVHPECINHISPD 64
           H K  ST++   +    H V + D  +K G    L+ R C  +   +N   E I  +SPD
Sbjct: 152 HVKRVSTKDPYPSPGRGHRVVLVDFGMKHGILRELNKRDCDVIVVPYNTTAEEILRLSPD 211

Query: 63  IVAV---*AIDEDVPAKVE 16
            + +       +DVP  +E
Sbjct: 212 GIMLSNGPGDPKDVPEAIE 230

to top

>CARA_BACCR (Q819S2) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 HNKLESTRNISIAANHDHNVNITDPHVKEGTASYLSNRACTKLFCLHNVHPECINHISPD 64
           H K  ST++   +    H V + D  +K G    L+ R C  +   +N   E I  +SPD
Sbjct: 152 HVKRVSTKDPYPSPGRGHRVVLVDFGMKHGILRELNKRDCDVIVVPYNTTAEEILRLSPD 211

Query: 63  IVAV---*AIDEDVPAKVE 16
            + +       +DVP  +E
Sbjct: 212 GIMLSNGPGDPKDVPEAIE 230

to top

>CARA_BACC1 (Q732I2) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 HNKLESTRNISIAANHDHNVNITDPHVKEGTASYLSNRACTKLFCLHNVHPECINHISPD 64
           H K  ST++   +    H V + D  +K G    L+ R C  +   +N   E I  +SPD
Sbjct: 152 HVKRVSTKDPYPSPGRGHRVVLVDFGMKHGILRELNKRDCDVIVVPYNTTAEEILRLSPD 211

Query: 63  IVAV---*AIDEDVPAKVE 16
            + +       +DVP  +E
Sbjct: 212 GIMLSNGPGDPKDVPEAIE 230

to top

>CARA_BACAN (Q81WF1) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 365

 Score = 29.6 bits (65), Expect = 6.9
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 243 HNKLESTRNISIAANHDHNVNITDPHVKEGTASYLSNRACTKLFCLHNVHPECINHISPD 64
           H K  ST++   +    H V + D  +K G    L+ R C  +   +N   E I  +SPD
Sbjct: 152 HVKRVSTKDPYPSPGRGHRVVLVDFGMKHGILRELNKRDCDVIVVPYNTTAEEILRLSPD 211

Query: 63  IVAV---*AIDEDVPAKVE 16
            + +       +DVP  +E
Sbjct: 212 GIMLSNGPGDPKDVPEAIE 230

to top

>ACSL1_RAT (P18163) Long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 1) (LACS 1)
           (Long-chain-fatty-acid--CoA ligase, liver isozyme)
          Length = 699

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -2

Query: 596 VTSHRRTLPLEDIRRFTLSTMSKKTSFFLYTRPSLLQPTAPVTCRVAFGTGLSEGLEEN 420
           +  + RTLP   +  F     +  T+F+  TRP  L+P   ++ +    TG +EG+  +
Sbjct: 18  IRQYVRTLPTNTLMGF--GAFAALTTFWYATRPKALKPPCDLSMQSVEVTGTTEGVRRS 74

to top

>TOPK_MOUSE (Q9JJ78) T-lymphokine-activated killer cell-originated protein|
           kinase (EC 2.7.12.2) (T-LAK cell-originated protein
           kinase) (PDZ-binding kinase)
          Length = 330

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 569 LEDIRRFTLSTMSKKTSFFLYTRPSLLQPTAPVTCRVAFGTGLSEGLEENGDR 411
           +E I  F     S+K    L + P +  P +P   ++ FGTG+S  L +   R
Sbjct: 1   MEGINNFKTPNKSEKRKSVLCSTPCVNIPASPFMQKLGFGTGVSVYLMKRSPR 53

to top

>SYC_PYRAB (Q9UYV2) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 477

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 307 NFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSP 420
           NFV + ELL         Q  SPE+++L++ Q+  RSP
Sbjct: 273 NFVTVRELL---------QRYSPEVIRLFVLQKHYRSP 301


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,417,843
Number of Sequences: 219361
Number of extensions: 1747533
Number of successful extensions: 4791
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 4659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4756
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5196311029
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result