>gb|AY846827.1| Triticum aestivum ribosomal protein L39 mRNA, complete cds
          Length = 171

 Score = 85.7 bits (43), Expect = 4e-14
 Identities = 68/79 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangctcg 60
           |||||||| ||||||||||| ||||||||| ||||| || ||||| |||||||| |||||
Sbjct: 92  ggaccgacaacaccatcaggtacaacgccaagcgcaggcactggcgccgcaccaagctcg 151

                              
Query: 61  nnttctaagcaggggatga 79
             |||||| | ||||||||
Sbjct: 152 gattctaatccggggatga 170

>gb|AY290722.1| Triticum aestivum ribosomal protein L39-like mRNA, partial sequence
          Length = 482

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 57/67 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangctcg 60
           |||||||| ||||||||||| ||||||| | ||||| || ||||| |||||||| |||||
Sbjct: 121 ggaccgacaacaccatcaggtacaacgcgaagcgcaggcactggcgccgcaccaagctcg 180

                  
Query: 61  nnttcta 67
             |||||
Sbjct: 181 ggttcta 187

>dbj|AK120800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012L04, full
           insert sequence
          Length = 387

 Score = 65.9 bits (33), Expect = 4e-08
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangctcg 60
           |||||||| ||||||||||| ||||||| | ||||| || ||||| |||||||| ||| |
Sbjct: 149 ggaccgacaacaccatcaggtacaacgcgaagcgcaggcactggcgccgcaccaagcttg 208

                        
Query: 61  nnttctaagcagg 73
             |||| ||||||
Sbjct: 209 ggttctgagcagg 221

>ref|XM_476336.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 378

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangctcg 60
           |||||| ||||||||||| ||||||| | ||||| || ||||| |||||||| |||||
Sbjct: 141 accgacaacaccatcaggtacaacgcgaagcgcaggcactggcgccgcaccaagctcg 198

>ref|XM_468273.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 156

 Score = 63.9 bits (32), Expect = 1e-07
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                     
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangct 58
           |||||||| ||||||||||| ||||||| | ||||| || ||||| |||||||| |||
Sbjct: 89  ggaccgacaacaccatcaggtacaacgcgaagcgcaggcactggcgccgcaccaagct 146

>dbj|AK059633.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A06, full
            insert sequence
          Length = 1230

 Score = 58.0 bits (29), Expect = 9e-06
 Identities = 60/73 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangctcg 60
            |||||||| ||||||||||| | ||||| | ||||| || ||||| |||||||| ||| |
Sbjct: 959  ggaccgacaacaccatcaggtataacgcgaagcgcaggcactggcgccgcaccaagcttg 1018

                         
Query: 61   nnttctaagcagg 73
              |||| ||||||
Sbjct: 1019 ggttctgagcagg 1031

>ref|XM_468271.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 357

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctggcnccgcaccangct 58
           |||||||| ||||||||||| | ||||| | ||||| || ||||| |||||||| |||
Sbjct: 290 ggaccgacaacaccatcaggtataacgcgaagcgcaggcactggcgccgcaccaagct 347

>gb|BT013257.1| Lycopersicon esculentum clone 134791F, mRNA sequence
          Length = 452

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 1   ggaccgacnacaccatcaggnacaacgccangcgcacgcnctgg 44
           |||||||| ||||||||||| ||||||| | ||||| || ||||
Sbjct: 126 ggaccgacaacaccatcaggtacaacgcgaagcgcaggcactgg 169

>ref|NM_119350.2| Arabidopsis thaliana structural constituent of ribosome AT4G31985
           mRNA, complete cds
          Length = 385

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggc 45
           |||||| ||||||||||| |||| |||| ||||| || |||||
Sbjct: 127 accgacaacaccatcaggtacaatgccaagcgcaggcactggc 169

>gb|AY057730.1| Arabidopsis thaliana AT4g31981/F13D4.162 mRNA, complete cds
          Length = 156

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggc 45
           |||||| ||||||||||| |||| |||| ||||| || |||||
Sbjct: 91  accgacaacaccatcaggtacaatgccaagcgcaggcactggc 133

>gb|AF372908.1|AF372908 Arabidopsis thaliana AT4g31981/F13D4.162 mRNA, complete cds
          Length = 321

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggc 45
           |||||| ||||||||||| |||| |||| ||||| || |||||
Sbjct: 127 accgacaacaccatcaggtacaatgccaagcgcaggcactggc 169

>emb|BX826958.1|CNS0A3AZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB80ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 307

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggc 45
           |||||| ||||||||||| |||| |||| ||||| || |||||
Sbjct: 111 accgacaacaccatcaggtacaatgccaagcgcaggcactggc 153

>dbj|AK118235.1| Arabidopsis thaliana mRNA for (NM_119350) Expressed protein;
           protein id: At4g31985.1, supported by cDNA: gi_13926316,
           supported by cDNA: gi_16323251 [Arabidopsis thaliana]
           sp|P51424|RL39_ARATH 60S ribosomal protein L39
           gb|AAK49624.1|AF372908_1 (AF372908) F13D4.162/F13D4.162
           [Arabidopsis thaliana] gb|AAL15360.1| (AY057730)
           AT4g31981/F13D4.162 [Arabidopsis thaliana], complete
           cds, clone: RAFL19-54-K12
          Length = 320

 Score = 46.1 bits (23), Expect = 0.033
 Identities = 37/43 (86%)
 Strand = Plus / Plus

                                                      
Query: 3   accgacnacaccatcaggnacaacgccangcgcacgcnctggc 45
           |||||| ||||||||||| |||| |||| ||||| || |||||
Sbjct: 125 accgacaacaccatcaggtacaatgccaagcgcaggcactggc 167

>gb|AC010369.7| Homo sapiens chromosome 5 clone CTD-2048F20, complete sequence
          Length = 160459

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    gcaggggatgaggacgatgg 88
             ||||||||||||||||||||
Sbjct: 31556 gcaggggatgaggacgatgg 31575

>gb|AC010493.6|AC010493 Homo sapiens chromosome 5 clone CTD-2347I17, complete sequence
          Length = 93862

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 69   gcaggggatgaggacgatgg 88
            ||||||||||||||||||||
Sbjct: 6170 gcaggggatgaggacgatgg 6151

>ref|NM_196662.1| Oryza sativa (japonica cultivar-group) contains similarity to
           gypsy-type retrotransposon (OSJNBa0012D19.23), mRNA
          Length = 1998

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 77  tgaggacgatggctcccgt 95
           |||||||||||||||||||
Sbjct: 897 tgaggacgatggctcccgt 915

>gb|AC087546.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0012D19,
              complete sequence
          Length = 153276

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     tgaggacgatggctcccgt 95
              |||||||||||||||||||
Sbjct: 121882 tgaggacgatggctcccgt 121900

>gb|AC163387.2| Mus musculus chromosome 1, clone RP24-181G14, complete sequence
          Length = 194188

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 148    gtttctgaaagatattatt 166
              |||||||||||||||||||
Sbjct: 130629 gtttctgaaagatattatt 130611

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 77       tgaggacgatggctcccgt 95
                |||||||||||||||||||
Sbjct: 15063263 tgaggacgatggctcccgt 15063281

>emb|BX827068.1|CNS0A3B9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB91ZB10 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 297

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 28/32 (87%)
 Strand = Plus / Plus

                                           
Query: 3   accgacnacaccatcaggnacaacgccangcg 34
           |||||| ||||||||||| |||| |||| |||
Sbjct: 89  accgacaacaccatcaggtacaatgccaagcg 120

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 8.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 77       tgaggacgatggctcccgt 95
                |||||||||||||||||||
Sbjct: 15071504 tgaggacgatggctcccgt 15071522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 515,225
Number of Sequences: 3902068
Number of extensions: 515225
Number of successful extensions: 33598
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33569
Number of HSP's gapped (non-prelim): 29
length of query: 167
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 145
effective length of database: 17,147,199,772
effective search space: 2486343966940
effective search space used: 2486343966940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)