ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19k19 |
|---|---|
| Clone Library Name | barley_pub |
>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)| (Fertility restorer) (Restorer for CMS) Length = 791 Score = 60.1 bits (144), Expect = 4e-09 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 35/143 (24%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLV--- 175 +M ++G+NP+ TY +I + V+DA+ YF +M D GL P +N +I GL Sbjct: 396 KMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCN 455 Query: 176 --------------------------------KVDRIDEAQGFFDLMTEKEVKPNIASCE 259 K R+ E++ F+LM VKPN+ + Sbjct: 456 KWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYN 515 Query: 260 SLLRAYINVARLDDAIKMAKGIL 328 +L+ Y ++D+A+K+ G++ Sbjct: 516 TLINGYCLAGKMDEAMKLLSGMV 538 Score = 55.5 bits (132), Expect = 9e-08 Identities = 31/87 (35%), Positives = 47/87 (54%) Frame = +2 Query: 8 MGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDR 187 M GI+PD Y + +LI + + VD A+ FSKM GL PNA + VI L K R Sbjct: 362 MVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGR 421 Query: 188 IDEAQGFFDLMTEKEVKPNIASCESLL 268 +++A +F+ M ++ + P SL+ Sbjct: 422 VEDAMLYFEQMIDEGLSPGNIVYNSLI 448 Score = 55.1 bits (131), Expect = 1e-07 Identities = 29/105 (27%), Positives = 55/105 (52%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVD 184 EM +RGI + + +I+S + V ++ F M +G++PN +N +I+G Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525 Query: 185 RIDEAQGFFDLMTEKEVKPNIASCESLLRAYINVARLDDAIKMAK 319 ++DEA M +KPN + +L+ Y ++R++DA+ + K Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFK 570 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/91 (29%), Positives = 45/91 (49%) Frame = +2 Query: 20 GINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEA 199 G+ P+ TY LI +D+A+ S M VGL+PN ++ +I+G K+ R+++A Sbjct: 506 GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDA 565 Query: 200 QGFFDLMTEKEVKPNIASCESLLRAYINVAR 292 F M V P+I + +L+ R Sbjct: 566 LVLFKEMESSGVSPDIITYNIILQGLFQTRR 596 Score = 50.1 bits (118), Expect = 4e-06 Identities = 27/90 (30%), Positives = 47/90 (52%) Frame = +2 Query: 8 MGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDR 187 M + G+ PD TY ++ +A+G+ KM G+ P+ ++ ++ L K R Sbjct: 257 MVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGR 316 Query: 188 IDEAQGFFDLMTEKEVKPNIASCESLLRAY 277 EA+ FD MT++ +KP I + +LL+ Y Sbjct: 317 CMEARKIFDSMTKRGLKPEITTYGTLLQGY 346 Score = 46.2 bits (108), Expect = 6e-05 Identities = 28/92 (30%), Positives = 46/92 (50%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVD 184 EM +RGI PD TY +I + + +D A+ + M G+ P+ +N ++ G Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280 Query: 185 RIDEAQGFFDLMTEKEVKPNIASCESLLRAYI 280 + EA GF M V+P++ + SLL Y+ Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVT-YSLLMDYL 311 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/101 (25%), Positives = 43/101 (42%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVD 184 +M G+ PD TY LL++ + +A F M GL+P + ++ G Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350 Query: 185 RIDEAQGFFDLMTEKEVKPNIASCESLLRAYINVARLDDAI 307 + E G DLM + P+ L+ AY ++D A+ Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/100 (23%), Positives = 48/100 (48%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVD 184 EM G++PD TY ++++ F+ A + ++ + G + + +N ++ GL K Sbjct: 571 EMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNK 630 Query: 185 RIDEAQGFFDLMTEKEVKPNIASCESLLRAYINVARLDDA 304 D+A F + ++K + ++ A + V R D+A Sbjct: 631 LTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEA 670 Score = 42.0 bits (97), Expect = 0.001 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Frame = +2 Query: 11 GERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRI 190 G + PD TY +LI C R +D + G R +A AF ++ GL R Sbjct: 79 GADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRT 138 Query: 191 DEAQGF-FDLMTEKEVKPNIASCESLLRAYINVARLDDAIKM 313 +A MTE PN+ S LL+ + R +A+++ Sbjct: 139 SDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEALEL 180 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/100 (23%), Positives = 47/100 (47%) Frame = +2 Query: 8 MGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDR 187 M +RG+ P+ TY L++ + + G M G+ P+ F+ +I K + Sbjct: 327 MTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGK 386 Query: 188 IDEAQGFFDLMTEKEVKPNIASCESLLRAYINVARLDDAI 307 +D+A F M ++ + PN + +++ R++DA+ Sbjct: 387 VDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426 Score = 39.3 bits (90), Expect = 0.007 Identities = 23/77 (29%), Positives = 37/77 (48%) Frame = +2 Query: 14 ERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRID 193 E G + TY +++ + DDA+ F + + L+ A FN +I L+KV R D Sbjct: 609 ESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRND 668 Query: 194 EAQGFFDLMTEKEVKPN 244 EA+ F + + PN Sbjct: 669 EAKDLFVAFSSNGLVPN 685
>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915| Length = 463 Score = 54.7 bits (130), Expect = 2e-07 Identities = 27/98 (27%), Positives = 51/98 (52%) Frame = +2 Query: 20 GINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEA 199 G++PD TY LI R +++A +M D G+RP+ +N +I+G + +D Sbjct: 43 GVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHV 102 Query: 200 QGFFDLMTEKEVKPNIASCESLLRAYINVARLDDAIKM 313 FD M E + P++ S +L+ Y + + ++A ++ Sbjct: 103 LYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRV 140 Score = 46.6 bits (109), Expect = 4e-05 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +2 Query: 5 EMGERGINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVD 184 E+ RG+ DEYT+ +++ R A +F M ++G+ N N ++ GL K Sbjct: 318 EIERRGMKADEYTHTIIVNGLLRTGQTRRAEEHFVSMGEMGIGLNLVTCNCLVDGLCKAG 377 Query: 185 RIDEAQGFFDLMTEKE 232 +D A +F+ M K+ Sbjct: 378 HVDRAMRYFESMEVKD 393 Score = 31.6 bits (70), Expect = 1.4 Identities = 18/86 (20%), Positives = 39/86 (45%) Frame = +2 Query: 50 LLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEK 229 + ++S + ++ A +G+ P+ +N +ISG + I+EA M + Sbjct: 18 ICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDA 77 Query: 230 EVKPNIASCESLLRAYINVARLDDAI 307 ++P++A+ SL+ LD + Sbjct: 78 GIRPDVATYNSLIAGAARRLMLDHVL 103
>PHNC_MYCMS (Q6MUF4) Phosphonates import ATP-binding protein phnC (EC 3.6.3.28)| Length = 250 Score = 33.5 bits (75), Expect = 0.38 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Frame = -2 Query: 370 KCLQFISKHDTLIQKNTLSHLNCI----IQPCNIDVCSQQRFAASNIWLDLLFGHQIKEP 203 K L F + D +I N+L LN + I+ N+ QQR A + F EP Sbjct: 119 KILGFFKREDKMIALNSLDKLNLLDYAYIRADNLSGGQQQRVALARTLAQQPFLIIADEP 178 Query: 202 LCLINPINLHQATYDFV---KGIGIGPETNIKHLAEVTNSVIHIINPEAGLNE*DI 44 + ++PI +Q DF K GI NI H+ +I GLN +I Sbjct: 179 VSALDPILANQVMKDFKNINKKDGITVIINIHHVDLAKKYATRVI----GLNNGEI 230
>CEMA_PHYPA (Q6YXR1) Chloroplast envelope membrane protein| Length = 439 Score = 31.2 bits (69), Expect = 1.9 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 244 IWLDLLFGHQIKEPLCLINPINLHQATYDFVKGIGIGPETNIKHLAEVTNSVIHIINPEA 65 +WLD + + +KEP I +HQ T VK I E ++ L + ++++I A Sbjct: 276 VWLDKIMVNSLKEPQSQDLNIEIHQKTIQLVK---IYNENSLNTLLHLLTDIVYVITLSA 332
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 30.4 bits (67), Expect = 3.2 Identities = 18/49 (36%), Positives = 21/49 (42%) Frame = -1 Query: 221 SSDQRTPVPHQSYQPSPSHL*LC*RHWHWA*DQHQTSC*SNQQRHPHYQ 75 SS Q HQ YQ P H H H+ QHQ Q +H H+Q Sbjct: 14 SSQQHEHQQHQQYQQPPQH------HQHYEAPQHQ-----QQHQHHHHQ 51
>IF4A1_RABIT (P29562) Eukaryotic initiation factor 4A-I (EC 3.6.1.-)| (ATP-dependent RNA helicase eIF4A-1) (eIF4A-I) (eIF-4A-I) (Fragment) Length = 398 Score = 29.6 bits (65), Expect = 5.5 Identities = 23/129 (17%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Frame = +2 Query: 68 FRVDNVDDAV--GYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKP 241 F +D D+ + G+ +++D+ + N+N ++S + D ++ + F VK Sbjct: 171 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 230 Query: 242 NIASCESLLRAYINVAR----LDDAIKMAKGILLDESIVFTDXXXXXXXXXXXXXXRNGD 409 + E + + YINV R LD + + + + ++++F + R+ Sbjct: 231 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT 290 Query: 410 MTKLYEDVE 436 ++ ++ D++ Sbjct: 291 VSAMHGDMD 299
>IF4A1_PONPY (Q5R5F5) Eukaryotic initiation factor 4A-I (EC 3.6.1.-)| (ATP-dependent RNA helicase eIF4A-1) (eIF4A-I) (eIF-4A-I) Length = 406 Score = 29.6 bits (65), Expect = 5.5 Identities = 23/129 (17%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Frame = +2 Query: 68 FRVDNVDDAV--GYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKP 241 F +D D+ + G+ +++D+ + N+N ++S + D ++ + F VK Sbjct: 179 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238 Query: 242 NIASCESLLRAYINVAR----LDDAIKMAKGILLDESIVFTDXXXXXXXXXXXXXXRNGD 409 + E + + YINV R LD + + + + ++++F + R+ Sbjct: 239 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT 298 Query: 410 MTKLYEDVE 436 ++ ++ D++ Sbjct: 299 VSAMHGDMD 307
>IF4A1_MOUSE (P60843) Eukaryotic initiation factor 4A-I (EC 3.6.1.-)| (ATP-dependent RNA helicase eIF4A-1) (eIF4A-I) (eIF-4A-I) Length = 406 Score = 29.6 bits (65), Expect = 5.5 Identities = 23/129 (17%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Frame = +2 Query: 68 FRVDNVDDAV--GYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKP 241 F +D D+ + G+ +++D+ + N+N ++S + D ++ + F VK Sbjct: 179 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238 Query: 242 NIASCESLLRAYINVAR----LDDAIKMAKGILLDESIVFTDXXXXXXXXXXXXXXRNGD 409 + E + + YINV R LD + + + + ++++F + R+ Sbjct: 239 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT 298 Query: 410 MTKLYEDVE 436 ++ ++ D++ Sbjct: 299 VSAMHGDMD 307
>IF4A1_HUMAN (P60842) Eukaryotic initiation factor 4A-I (EC 3.6.1.-)| (ATP-dependent RNA helicase eIF4A-1) (eIF4A-I) (eIF-4A-I) Length = 406 Score = 29.6 bits (65), Expect = 5.5 Identities = 23/129 (17%), Positives = 58/129 (44%), Gaps = 6/129 (4%) Frame = +2 Query: 68 FRVDNVDDAV--GYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKP 241 F +D D+ + G+ +++D+ + N+N ++S + D ++ + F VK Sbjct: 179 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238 Query: 242 NIASCESLLRAYINVAR----LDDAIKMAKGILLDESIVFTDXXXXXXXXXXXXXXRNGD 409 + E + + YINV R LD + + + + ++++F + R+ Sbjct: 239 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFT 298 Query: 410 MTKLYEDVE 436 ++ ++ D++ Sbjct: 299 VSAMHGDMD 307
>RS2_AQUAE (O67809) 30S ribosomal protein S2| Length = 274 Score = 28.9 bits (63), Expect = 9.3 Identities = 18/59 (30%), Positives = 30/59 (50%) Frame = +2 Query: 101 YFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKPNIASCESLLRAY 277 Y ++ + GL N K I L ++R++E G FD++ +KEV+ E L + Y Sbjct: 91 YVNERWVGGLLTNFQTVRKSIMKLQTLERMEE-DGIFDVLPKKEVRNLRRKMEKLRKLY 148
>IF4A1_MACFA (Q4R8K5) Eukaryotic initiation factor 4A-I (EC 3.6.1.-)| (ATP-dependent RNA helicase eIF4A-1) (eIF4A-I) (eIF-4A-I) Length = 406 Score = 28.9 bits (63), Expect = 9.3 Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 6/100 (6%) Frame = +2 Query: 68 FRVDNVDDAV--GYFSKMFDVGLRPNANAFNKVISGLVKVDRIDEAQGFFDLMTEKEVKP 241 F +D D+ + G+ +++D+ + N+N ++S + D ++ + F VK Sbjct: 179 FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKK 238 Query: 242 NIASCESLLRAYINVAR----LDDAIKMAKGILLDESIVF 349 + E + + YINV R LD + + + + ++++F Sbjct: 239 EELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIF 278
>CFTR_SHEEP (Q00555) Cystic fibrosis transmembrane conductance regulator (CFTR)| (cAMP-dependent chloride channel) (ATP-binding cassette transporter sub-family C member 7) Length = 1481 Score = 28.9 bits (63), Expect = 9.3 Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 14/124 (11%) Frame = +2 Query: 20 GINPDEYTYVLLIESCFRVDNVDDAVGYFSKMFDVGLRPNANAFNKVISGLVKVDR---- 187 G++ DEY Y +I++C +++ + FS+ ++ L + + + R Sbjct: 508 GVSYDEYRYRSVIKAC----QLEEDISKFSEKDNIVLGEGGITLSGGQRARISLARAVYK 563 Query: 188 ------IDEAQGFFDLMTEKEVKPNIASCESLLRA----YINVARLDDAIKMAKGILLDE 337 +D G+ D++TEKE+ SC L A + ++++ K K ++L E Sbjct: 564 DADLYLLDSPFGYLDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKKADKILILHE 620 Query: 338 SIVF 349 V+ Sbjct: 621 GSVY 624 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,275,372 Number of Sequences: 219361 Number of extensions: 1079456 Number of successful extensions: 2683 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2627 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2682 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4142954952 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
