ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19k09 |
|---|---|
| Clone Library Name | barley_pub |
>TMF1_HUMAN (P82094) TATA element modulatory factor (TMF)| Length = 1093 Score = 40.0 bits (92), Expect = 0.005 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +2 Query: 416 ESALRQKDGELASYMSRLASLESIRNSLAEELVKLTEQCEKLRNEAAALP 565 +S L+ ++GE+ + +LE R+ +AEELVKLT Q ++L + +P Sbjct: 990 QSQLKLREGEITHLQLEIGNLEKTRSIMAEELVKLTNQNDELEEKVKEIP 1039
>GFAP_RAT (P47819) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 430 Score = 36.6 bits (83), Expect = 0.050 Identities = 43/189 (22%), Positives = 76/189 (40%), Gaps = 12/189 (6%) Frame = +2 Query: 32 YLATKEEAALQ----EGRAKQLEEEIKELRFRHKKELQEA----ADHRALLETDXXXXXX 187 Y +EA L E + + LEEEI+ LR H++E++E A + +E D Sbjct: 170 YRQEADEATLARVDLERKVESLEEEIQFLRKIHEEEVRELQEQLAQQQVHVEMDVAKPDL 229 Query: 188 XXXXXXXTSSHDLPKIPLPDQTKNAPQRKLSSVSSMEESHFXXXXXXXXXXXXXERRTSA 367 + ++ +T+ + K + ++ + + R+ A Sbjct: 230 TAALREIRTQYEAVATSNMQETEEWYRSKFADLTDVASRNAELVRQAKHEANDYRRQLQA 289 Query: 368 DSNMSYYLRSMTPSAFESALRQKDG----ELASYMSRLASLESIRNSLAEELVKLTEQCE 535 + LR T + E +R+++ E ASY LA LE SL EE+ + ++ + Sbjct: 290 LTCDLESLRG-TNESLERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQ 348 Query: 536 KLRNEAAAL 562 L N AL Sbjct: 349 DLLNVKLAL 357
>PHLB1_RAT (Q63312) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) (Fragment) Length = 831 Score = 33.5 bits (75), Expect = 0.43 Identities = 20/54 (37%), Positives = 30/54 (55%) Frame = +2 Query: 2 DKXHLKVDRXYLATKEEAALQEGRAKQLEEEIKELRFRHKKELQEAADHRALLE 163 D K+ LA +EE A GR +QL+ +KEL + ++ +EA RALL+ Sbjct: 200 DAPSTKLQGEVLAVEEERAQVLGRVEQLKVRVKELEQQLQEAAREAEMERALLQ 253
>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring| protein 9) (PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein) (Yotiao protei Length = 3911 Score = 32.7 bits (73), Expect = 0.73 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +2 Query: 413 FESALRQKDGELASYMSRLASLESIRNSLAEELVKLTEQCEKLR 544 FE+A++Q+DG + + L ++ E ++LTEQ +KL+ Sbjct: 208 FEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQ 251
>GFAP_MOUSE (P03995) Glial fibrillary acidic protein, astrocyte (GFAP)| Length = 430 Score = 32.3 bits (72), Expect = 0.95 Identities = 37/174 (21%), Positives = 70/174 (40%), Gaps = 8/174 (4%) Frame = +2 Query: 65 EGRAKQLEEEIKELRFRHKKEL----QEAADHRALLETDXXXXXXXXXXXXXTSSHDLPK 232 E + + LEEEI+ LR +++E+ ++ A + +E D + ++ Sbjct: 184 ERKVESLEEEIQFLRKIYEEEVRDLREQLAQQQVHVEMDVAKPDLTAALREIRTQYEAVA 243 Query: 233 IPLPDQTKNAPQRKLSSVSSMEESHFXXXXXXXXXXXXXERRTSADSNMSYYLRSMTPSA 412 +T+ + K + ++ + R+ A + LR T + Sbjct: 244 TSNMQETEEWYRSKFADLTDAASRNAELLRQAKHEANDYRRQLQALTCDLESLRG-TNES 302 Query: 413 FESALRQKDG----ELASYMSRLASLESIRNSLAEELVKLTEQCEKLRNEAAAL 562 E +R+++ E ASY LA LE SL EE+ + ++ + L N AL Sbjct: 303 LERQMREQEERHARESASYQEALARLEEEGQSLKEEMARHLQEYQDLLNVKLAL 356
>RAD50_PYRKO (Q5JHN1) DNA double-strand break repair rad50 ATPase| Length = 883 Score = 32.0 bits (71), Expect = 1.2 Identities = 46/191 (24%), Positives = 68/191 (35%), Gaps = 18/191 (9%) Frame = +2 Query: 44 KEEAALQEGRAKQLEEEIKELRFRHKK------ELQEAADHRALLETDXXXXXXXXXXXX 205 K++ A EG K LE+EIK+ KK +L+E + RA L + Sbjct: 533 KKKLAGLEGEIKSLEDEIKKGELLKKKLALVEKKLRELEEERASLLGELKKLGFGDVKEL 592 Query: 206 XTSSHDLPKI--------PLPDQTKNAPQR----KLSSVSSMEESHFXXXXXXXXXXXXX 349 +L P D+ K KL + ++E Sbjct: 593 EERLKELEPAYKRYIELRPARDELKREEDLLKSLKLDLTAILKEIEKTSKRVEELRKRVE 652 Query: 350 ERRTSADSNMSYYLRSMTPSAFESALRQKDGELASYMSRLASLESIRNSLAEELVKLTEQ 529 E S D + L+ T R+ ELA +RL SLE R+ + L KL E+ Sbjct: 653 ELEKSYDKDRHEELKGKT--------RELSNELAGLEARLKSLEERRDEVKASLEKLREE 704 Query: 530 CEKLRNEAAAL 562 E + +A L Sbjct: 705 KETRKEKAKEL 715
>PHLB1_MOUSE (Q6PDH0) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1371 Score = 32.0 bits (71), Expect = 1.2 Identities = 18/43 (41%), Positives = 27/43 (62%) Frame = +2 Query: 35 LATKEEAALQEGRAKQLEEEIKELRFRHKKELQEAADHRALLE 163 LA +EE A GR +QL+ +KEL + ++ +EA RALL+ Sbjct: 719 LAVEEERAQVLGRVEQLKIRVKELEQQLQEAAREAEMERALLQ 761
>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1377 Score = 31.6 bits (70), Expect = 1.6 Identities = 19/54 (35%), Positives = 29/54 (53%) Frame = +2 Query: 2 DKXHLKVDRXYLATKEEAALQEGRAKQLEEEIKELRFRHKKELQEAADHRALLE 163 D K+ LA +EE A G +QL+ +KEL + ++ +EA RALL+ Sbjct: 703 DAPSTKLQGEVLALEEERAQVLGHVEQLKVRVKELEQQLQESAREAEMERALLQ 756
>HIS8_MYCTU (P0A678) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 380 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2 Query: 377 MSYYLRSMTPSAFESALRQKDGELASYMSRLASLESIRNSL 499 + Y+L S+T +A +ALR D L+S + +A E + SL Sbjct: 259 LPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSL 299
>HIS8_MYCBO (P0A679) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 380 Score = 30.4 bits (67), Expect = 3.6 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = +2 Query: 377 MSYYLRSMTPSAFESALRQKDGELASYMSRLASLESIRNSL 499 + Y+L S+T +A +ALR D L+S + +A E + SL Sbjct: 259 LPYHLSSVTQAAARAALRHSDDTLSSVAALIAERERVTTSL 299
>RAD50_METMP (P62134) DNA double-strand break repair rad50 ATPase| Length = 993 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%) Frame = +2 Query: 395 SMTPSAFESALRQKDGELASYMSRLASLESIRNS------LAEELVKLTEQCEKLRNE 550 ++ ++E L + +GEL L +LE ++N L EE++K E EKL+ E Sbjct: 168 NIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLEKLKLE 225
>TIG_LISMO (Q8Y7L0) Trigger factor (TF)| Length = 427 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Frame = +2 Query: 17 KVDRXYLATKEEAALQEGRAKQLEEEIK---ELRFRHKKELQEAAD 145 KV + TKE AL + AK ++EE++ EL+ + K LQEA + Sbjct: 236 KVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRLQEAKE 281
>TIG_LISMF (Q720F5) Trigger factor (TF)| Length = 427 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Frame = +2 Query: 17 KVDRXYLATKEEAALQEGRAKQLEEEIK---ELRFRHKKELQEAAD 145 KV + TKE AL + AK ++EE++ EL+ + K LQEA + Sbjct: 236 KVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRLQEAKE 281
>TIG_LISIN (Q92C85) Trigger factor (TF)| Length = 427 Score = 30.0 bits (66), Expect = 4.7 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Frame = +2 Query: 17 KVDRXYLATKEEAALQEGRAKQLEEEIK---ELRFRHKKELQEAAD 145 KV + TKE AL + AK ++EE++ EL+ + K LQEA + Sbjct: 236 KVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRLQEAKE 281
>TAF1_TOBAC (Q99142) Transcriptional activator TAF-1 (Fragment)| Length = 265 Score = 30.0 bits (66), Expect = 4.7 Identities = 23/57 (40%), Positives = 29/57 (50%) Frame = +2 Query: 392 RSMTPSAFESALRQKDGELASYMSRLASLESIRNSLAEELVKLTEQCEKLRNEAAAL 562 +S SA S LR K E R+ SL + +L E+ KL E EKL+ E AAL Sbjct: 202 QSNRESARRSRLR-KQAEAEELAIRVQSLTAENMTLKSEINKLMENSEKLKLENAAL 257
>SAS6_BRARE (Q7ZVT3) Spindle assembly abnormal protein 6 homolog| Length = 627 Score = 30.0 bits (66), Expect = 4.7 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 9/184 (4%) Frame = +2 Query: 38 ATKEEAALQEGRAKQLEEEIK-ELRFRHKKELQEAADHRALLETDXXXXXXXXXXXXXTS 214 A +E+A + R +Q E+++ EL H + Q+ + LET T Sbjct: 220 AEREKALETQSRLQQQNEQLRQELESSHHRSTQQLQTKVSELETANRELIDKKYKSDSTI 279 Query: 215 SHDLPKIP-LPDQTKNAPQRKLS----SVSSMEESHFXXXXXXXXXXXXXERRTSADSNM 379 K+ L ++ + + Q+ LS + + E H Sbjct: 280 RDLKAKLTSLEEECQRSKQQVLSLRRENSALDSECHEKERLLNQLQTRVAVLEQEIKDKD 339 Query: 380 SYYLRSMTPSAFESALRQK---DGELASYMSRLASLESIRNSLAEELVKLTEQCEKLRNE 550 LR T E+ +QK +G S +++ LES SL+EEL+K +KL+ + Sbjct: 340 QLVLR--TKEVLEATQQQKNSVEGNAESKQLQISKLESTVKSLSEELIKANGIIKKLQAD 397 Query: 551 AAAL 562 AL Sbjct: 398 LKAL 401
>ARLY_AQUAE (O67383) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 457 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%) Frame = +2 Query: 2 DKXHLK-VDRXYLATKEEAALQEGRAKQLEEEIKELRFRHKKELQE 136 D H+K + + + T+EEA +++EEIKE +F+ KKEL++ Sbjct: 38 DIAHVKTLQKAGILTEEEARELIQELLKIKEEIKEGKFQWKKELED 83
>HIS8_MYCLE (Q9X7B8) Histidinol-phosphate aminotransferase (EC 2.6.1.9)| (Imidazole acetol-phosphate transaminase) Length = 377 Score = 29.6 bits (65), Expect = 6.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +2 Query: 377 MSYYLRSMTPSAFESALRQKDGELASYMSRLASLESIRNSL 499 + Y+L S+T +A +ALR D L S + +A E + SL Sbjct: 257 LPYHLSSVTQAAARAALRHADDTLGSVAALIAERERVTKSL 297
>CRM_DROSE (Q8MX88) Protein cramped| Length = 975 Score = 29.6 bits (65), Expect = 6.1 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%) Frame = -3 Query: 563 AEQQLHSATFHIVPSVLPTPLP----GNSE*IPVRPSVTCKKPIL--HPFDGVLIQKHLE 402 A Q+LH I PS LP+ N+E P++PSV P + P GV I + L Sbjct: 308 ANQRLHEEKSAIFPSSLPSTATNNNNNNNETEPMQPSVASLDPSMCFQPRPGVAIHRPLL 367 Query: 401 SCSSD-SMTYYCLQTFSSPM 345 S ++ S CL + M Sbjct: 368 SITAYLSSISICLTAYEERM 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,454,257 Number of Sequences: 219361 Number of extensions: 1325362 Number of successful extensions: 4729 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4453 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4729 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
