Clone Information

BLAST Search Result

Clone Name	bags19j23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS13_MAIZE (Q05761) 40S ribosomal protein S13	112	3e-25
2	RS13_SOYBN (P62302) 40S ribosomal protein S13	97	1e-20
3	RS13B_ARATH (P59224) 40S ribosomal protein S13-2	95	4e-20
4	RS13A_ARATH (P59223) 40S ribosomal protein S13-1	94	7e-20
5	RS13_PEA (P46298) 40S ribosomal protein S13	93	2e-19
6	RS13_AGABI (P78571) 40S ribosomal protein S13	87	9e-18
7	RS13_CIOIN (Q8I7D6) 40S ribosomal protein S13	82	3e-16
8	RS13_ANOGA (P52811) 40S ribosomal protein S13	82	4e-16
9	RS13_CRIGR (Q9WVH0) 40S ribosomal protein S13	82	5e-16
10	RS13_WUCBA (P62300) 40S ribosomal protein S13 (40S ribosomal pro...	81	6e-16
11	RS13_BRUPA (P62299) 40S ribosomal protein S13 (17.4K protein)	81	6e-16
12	RS13_PIG (P62279) 40S ribosomal protein S13 (Fragment)	80	1e-15
13	RS13_XENLA (P49393) 40S ribosomal protein S13	80	1e-15
14	RS13_SCHPO (P28189) 40S ribosomal protein S13	80	1e-15
15	RS13_RAT (P62278) 40S ribosomal protein S13	80	1e-15
16	RS13_MOUSE (P62301) 40S ribosomal protein S13	80	1e-15
17	RS13_LUMRU (O77303) 40S ribosomal protein S13	80	1e-15
18	RS13_HUMAN (P62277) 40S ribosomal protein S13	80	1e-15
19	RS13_GILMI (Q9DFR6) 40S ribosomal protein S13	80	1e-15
20	RS13_CHICK (Q6ITC7) 40S ribosomal protein S13	80	1e-15
21	RS13_BOVIN (Q56JX8) 40S ribosomal protein S13	80	1e-15
22	RS13_DROME (Q03334) 40S ribosomal protein S13	80	2e-15
23	RS13_SPOFR (Q962R6) 40S ribosomal protein S13	79	2e-15
24	RS13_PLUXY (Q8I7U0) 40S ribosomal protein S13	79	2e-15
25	RS13_YEAST (P05756) 40S ribosomal protein S13 (S27A) (YS15)	79	3e-15
26	RS13_CANMA (P33192) 40S ribosomal protein S13 (S15)	79	3e-15
27	RS13_ICTPU (P47772) 40S ribosomal protein S13	79	4e-15
28	RS13_CHOPR (Q8MUR2) 40S ribosomal protein S13	78	7e-15
29	RS13_CAEEL (P51404) 40S ribosomal protein S13	77	2e-14
30	RS15_METKA (Q8TV08) 30S ribosomal protein S15P/S13e	60	1e-09
31	RS15_METJA (P54012) 30S ribosomal protein S15P/S13e	57	1e-08
32	RS15_PYRAB (Q9V2K9) 30S ribosomal protein S15P/S13e	56	2e-08
33	RS15_PYRKO (Q5JGJ4) 30S ribosomal protein S15P/S13e	56	3e-08
34	RS15_PYRFU (Q8TZD9) 30S ribosomal protein S15P/S13e	56	3e-08
35	RS15_PYRHO (O57805) 30S ribosomal protein S15P/S13e	55	4e-08
36	RS15_SULAC (Q4JAI3) 30S ribosomal protein S15P/S13e	53	2e-07
37	RS15_SULSO (Q980A8) 30S ribosomal protein S15P/S13e	52	5e-07
38	RS15_ARCFU (O29457) 30S ribosomal protein S15P/S13e	52	5e-07
39	RS15_METAC (Q8TS56) 30S ribosomal protein S15P/S13e	51	7e-07
40	RS15_PYRAE (Q8ZT11) 30S ribosomal protein S15P/S13e	51	7e-07
41	RS15_METMA (Q8PVA5) 30S ribosomal protein S15P/S13e	51	9e-07
42	RS15_PICTO (Q6L2H3) 30S ribosomal protein S15P/S13e	50	1e-06
43	RS15_SULTO (Q975N5) 30S ribosomal protein S15P/S13e	50	2e-06
44	RS15_AERPE (Q9YCX3) 30S ribosomal protein S15P/S13e	50	2e-06
45	RS15_METBF (Q46BC9) 30S ribosomal protein S15P/S13e	49	3e-06
46	RS15_NATPD (Q3IQA3) 30S ribosomal protein S15P/S13e	49	3e-06
47	RS15_HALSA (Q9HRA2) 30S ribosomal protein S15P/S13e	49	3e-06
48	RS15_METMP (Q6LWX5) 30S ribosomal protein S15P/S13e	48	6e-06
49	RS15_THEAC (Q9HJ42) 30S ribosomal protein S15P/S13e	46	2e-05
50	RS13_ENCCU (Q8SRB3) 40S ribosomal protein S13	46	3e-05
51	RS15_NANEQ (Q74MB8) 30S ribosomal protein S15P/S13e	45	4e-05
52	RS15_HALMA (P05762) 30S ribosomal protein S15P/S13e (HmaS15) (HS11)	44	8e-05
53	RS15_METTH (O27474) 30S ribosomal protein S15P/S13e	43	2e-04
54	RS15_THEVO (Q979D0) 30S ribosomal protein S15P/S13e	41	7e-04
55	RS13_MUSDO (P27072) 40S ribosomal protein S13 (Fragment)	33	0.25
56	RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog...	31	0.97
57	RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6...	28	4.8
58	RENT1_MOUSE (Q9EPU0) Regulator of nonsense transcripts 1 (EC 3.6...	28	4.8
59	ACCA_SYNY3 (P74638) Acetyl-coenzyme A carboxylase carboxyl trans...	28	4.8
60	PRIA_MYCTU (P0A5A5) Putative primosomal protein N' (EC 3.6.1.-) ...	28	4.8
61	PRIA_MYCBO (P0A5A6) Putative primosomal protein N' (EC 3.6.1.-) ...	28	4.8

>RS13_MAIZE (Q05761) 40S ribosomal protein S13|
          Length = 151

 Score =  112 bits (279), Expect = 3e-25
 Identities = 52/59 (88%), Positives = 57/59 (96%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MG MHSRGKGISSSALPYKRTPP+W+KTA +DV+E+ITKAAKKGQMPSQIGVLLRDQHG
Sbjct: 1   MGAMHSRGKGISSSALPYKRTPPTWLKTAASDVEEMITKAAKKGQMPSQIGVLLRDQHG 59

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>RS13_SOYBN (P62302) 40S ribosomal protein S13|
          Length = 151

 Score = 97.1 bits (240), Expect = 1e-20
 Identities = 46/59 (77%), Positives = 50/59 (84%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MGRMHSRGKGISSSALPYKRTPPSW+K +  DV+E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   MGRMHSRGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHG 59

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>RS13B_ARATH (P59224) 40S ribosomal protein S13-2|
          Length = 151

 Score = 95.1 bits (235), Expect = 4e-20
 Identities = 45/59 (76%), Positives = 49/59 (83%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MGRMHSRGKGIS+SALPYKR+ PSW+KT   DVDE I K AKKG  PSQIGV+LRD HG
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHG 59

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>RS13A_ARATH (P59223) 40S ribosomal protein S13-1|
          Length = 151

 Score = 94.4 bits (233), Expect = 7e-20
 Identities = 45/59 (76%), Positives = 49/59 (83%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MGRMHSRGKGIS+SALPYKR+ PSW+KT   DVDE I K AKKG  PSQIGV+LRD HG
Sbjct: 1   MGRMHSRGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHG 59

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>RS13_PEA (P46298) 40S ribosomal protein S13|
          Length = 151

 Score = 92.8 bits (229), Expect = 2e-19
 Identities = 43/59 (72%), Positives = 49/59 (83%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MGR+HS+GKGISSSALPY+RT PSW+K +  DVDE I K AKKG  PSQIGV+LRD HG
Sbjct: 1   MGRLHSKGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHG 59

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>RS13_AGABI (P78571) 40S ribosomal protein S13|
          Length = 151

 Score = 87.4 bits (215), Expect = 9e-18
 Identities = 41/59 (69%), Positives = 47/59 (79%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           MGRMH+ GKGISSSALPY+RTPPSW+KT   +V E I K A+KG  PSQIGV LR+ HG
Sbjct: 1   MGRMHAPGKGISSSALPYRRTPPSWLKTTSEEVVEQIVKLARKGLTPSQIGVTLRNSHG 59

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>RS13_CIOIN (Q8I7D6) 40S ribosomal protein S13|
          Length = 150

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 38/58 (65%), Positives = 46/58 (79%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+SSSALPY+R+ P+W+K +  DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSSSALPYRRSVPTWLKLSSEDVKEQIYKLAKKGLRPSQIGVILRDSHG 58

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>RS13_ANOGA (P52811) 40S ribosomal protein S13|
          Length = 150

 Score = 82.0 bits (201), Expect = 4e-16
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ PSW+K +  DV E I K  KKG  PSQIG++LRD HG
Sbjct: 1   GRMHAPGKGISKSALPYRRSVPSWLKLSAEDVKEQIKKLGKKGMTPSQIGIILRDSHG 58

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>RS13_CRIGR (Q9WVH0) 40S ribosomal protein S13|
          Length = 150

 Score = 81.6 bits (200), Expect = 5e-16
 Identities = 38/58 (65%), Positives = 45/58 (77%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K A  DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_WUCBA (P62300) 40S ribosomal protein S13 (40S ribosomal protein S15)|
          Length = 150

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    +V E +T+ AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHG 58

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>RS13_BRUPA (P62299) 40S ribosomal protein S13 (17.4K protein)|
          Length = 150

 Score = 81.3 bits (199), Expect = 6e-16
 Identities = 36/58 (62%), Positives = 45/58 (77%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    +V E +T+ AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHG 58

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>RS13_PIG (P62279) 40S ribosomal protein S13 (Fragment)|
          Length = 106

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_XENLA (P49393) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_SCHPO (P28189) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 38/58 (65%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMHS+GKGI+SSALPY R+PP+W K     V E I K +KKG  PSQIGV LRD HG
Sbjct: 1   GRMHSKGKGIASSALPYVRSPPAWCKADADSVVEQILKFSKKGMSPSQIGVTLRDSHG 58

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>RS13_RAT (P62278) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_MOUSE (P62301) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_LUMRU (O77303) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 38/58 (65%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGISQSALPYRRSVPTWLKLGPDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_HUMAN (P62277) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_GILMI (Q9DFR6) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHG 58

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>RS13_CHICK (Q6ITC7) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_BOVIN (Q56JX8) 40S ribosomal protein S13|
          Length = 150

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 37/58 (63%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALPY+R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHG 58

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>RS13_DROME (Q03334) 40S ribosomal protein S13|
          Length = 150

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+RT PSW+K    DV E I K  KKG  PS+IG++LRD HG
Sbjct: 1   GRMHAPGKGISQSALPYRRTVPSWLKLNADDVKEQIKKLGKKGLTPSKIGIILRDSHG 58

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>RS13_SPOFR (Q962R6) 40S ribosomal protein S13|
          Length = 150

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    DV E I K  KKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHG 58

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>RS13_PLUXY (Q8I7U0) 40S ribosomal protein S13|
          Length = 150

 Score = 79.3 bits (194), Expect = 2e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    DV E I K  KKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHG 58

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>RS13_YEAST (P05756) 40S ribosomal protein S13 (S27A) (YS15)|
          Length = 150

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 38/58 (65%), Positives = 42/58 (72%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMHS GKGISSSA+PY R  P+W K +   V E I K A+KG  PSQIGVLLRD HG
Sbjct: 1   GRMHSAGKGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHG 58

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>RS13_CANMA (P33192) 40S ribosomal protein S13 (S15)|
          Length = 150

 Score = 79.0 bits (193), Expect = 3e-15
 Identities = 37/58 (63%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMHS GKGISSSA+PY R  PSW K +  +V E + K A+KG  PSQIGV+LRD HG
Sbjct: 1   GRMHSAGKGISSSAIPYSRNAPSWFKLSSDEVVEQVIKYARKGLTPSQIGVILRDAHG 58

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>RS13_ICTPU (P47772) 40S ribosomal protein S13|
          Length = 150

 Score = 78.6 bits (192), Expect = 4e-15
 Identities = 36/58 (62%), Positives = 44/58 (75%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG+S SALP++R+ P+W+K    DV E I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHAPGKGLSQSALPFRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHG 58

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>RS13_CHOPR (Q8MUR2) 40S ribosomal protein S13|
          Length = 150

 Score = 77.8 bits (190), Expect = 7e-15
 Identities = 37/58 (63%), Positives = 42/58 (72%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKGIS SALPY+R+ P+W+K    DV E I K  KKG  PSQIGV LRD HG
Sbjct: 1   GRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVKLRDSHG 58

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>RS13_CAEEL (P51404) 40S ribosomal protein S13|
          Length = 150

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +1

Query: 73  GRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           GRMH+ GKG++ SA+PY+R+ PSW K    +V + I K AKKG  PSQIGV+LRD HG
Sbjct: 1   GRMHNPGKGMAKSAIPYRRSVPSWQKMTAEEVQDQIVKMAKKGLRPSQIGVILRDSHG 58

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>RS15_METKA (Q8TV08) 30S ribosomal protein S15P/S13e|
          Length = 149

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMHSR +G S S  P +  PPSWV+ +  +V+ L+   AK+G  P+ IG+ LRD++G
Sbjct: 1   MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYG 59

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>RS15_METJA (P54012) 30S ribosomal protein S15P/S13e|
          Length = 153

 Score = 57.0 bits (136), Expect = 1e-08
 Identities = 25/59 (42%), Positives = 38/59 (64%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S  P ++  P WV+     V++L+ + AKKG   +QIG++LRD +G
Sbjct: 1   MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYG 59

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>RS15_PYRAB (Q9V2K9) 30S ribosomal protein S15P/S13e|
          Length = 158

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 24/59 (40%), Positives = 36/59 (61%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S  P +  PP W++    D++ L+ K  K+G   + IG +LRDQ+G
Sbjct: 1   MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYG 59

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>RS15_PYRKO (Q5JGJ4) 30S ribosomal protein S15P/S13e|
          Length = 151

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 24/59 (40%), Positives = 37/59 (62%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M R+H+R +G S S  P +  PP+WV+    +V+ L+ K  K+G   + IG +LRDQ+G
Sbjct: 1   MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYG 59

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>RS15_PYRFU (Q8TZD9) 30S ribosomal protein S15P/S13e|
          Length = 158

 Score = 55.8 bits (133), Expect = 3e-08
 Identities = 24/59 (40%), Positives = 36/59 (61%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S  P +  PP WV+    +++ L+ K  K+G   + IG +LRDQ+G
Sbjct: 1   MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYG 59

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>RS15_PYRHO (O57805) 30S ribosomal protein S15P/S13e|
          Length = 158

 Score = 55.5 bits (132), Expect = 4e-08
 Identities = 24/59 (40%), Positives = 35/59 (59%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S  P +  PP W+     D++ L+ K  K+G   + IG +LRDQ+G
Sbjct: 1   MARMHARKRGKSGSKRPPRTAPPIWLDYTVEDIENLVVKLRKEGYSTAMIGTILRDQYG 59

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>RS15_SULAC (Q4JAI3) 30S ribosomal protein S15P/S13e|
          Length = 153

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 24/53 (45%), Positives = 34/53 (64%)
 Frame = +1

Query: 88  RGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           R KG S S  P +  PP WV+    +V+ L+ + AK+G  PS IG++LRDQ+G
Sbjct: 5   RAKGNSHSIRPVRSGPPKWVRFTREEVELLVEELAKRGYPPSMIGMVLRDQYG 57

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>RS15_SULSO (Q980A8) 30S ribosomal protein S15P/S13e|
          Length = 152

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 23/53 (43%), Positives = 33/53 (62%)
 Frame = +1

Query: 88  RGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           R KG S S  P +   P WV+    +V+ L+ + AK+G  PS IG++LRDQ+G
Sbjct: 5   RAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYG 57

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>RS15_ARCFU (O29457) 30S ribosomal protein S15P/S13e|
          Length = 152

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 22/59 (37%), Positives = 38/59 (64%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M R+H+R +G S S   Y+ +PP WV  +  +V++ + +   +G  PS IG++LRD++G
Sbjct: 1   MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYG 59

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>RS15_METAC (Q8TS56) 30S ribosomal protein S15P/S13e|
          Length = 152

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M +MH++ KG SSS  P +  PP W K    +V  ++    K+G   ++IG++LRD++G
Sbjct: 1   MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYG 59

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>RS15_PYRAE (Q8ZT11) 30S ribosomal protein S15P/S13e|
          Length = 151

 Score = 51.2 bits (121), Expect = 7e-07
 Identities = 22/51 (43%), Positives = 35/51 (68%)
 Frame = +1

Query: 94  KGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           KG S S  P   T P+W++    +V++L+ + A++G  PSQIG++LRDQ+G
Sbjct: 9   KGRSRSVRPAHPTVPTWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYG 59

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>RS15_METMA (Q8PVA5) 30S ribosomal protein S15P/S13e|
          Length = 152

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 23/59 (38%), Positives = 35/59 (59%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M +MH++ KG SSS  P +  PP W K    +V  +     K+G   S+IG++LRD++G
Sbjct: 1   MAKMHTKRKGKSSSTRPNRTEPPEWCKIGADEVTTITLDLWKQGVSTSEIGMILRDRYG 59

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>RS15_PICTO (Q6L2H3) 30S ribosomal protein S15P/S13e|
          Length = 146

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 24/58 (41%), Positives = 35/58 (60%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQH 243
           M RMH+R +G S S     R  PSW++ +  ++ E+I K  K+G   S IG+ LRDQ+
Sbjct: 1   MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQY 58

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>RS15_SULTO (Q975N5) 30S ribosomal protein S15P/S13e|
          Length = 153

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 23/53 (43%), Positives = 32/53 (60%)
 Frame = +1

Query: 88  RGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           R  G S S  P +   P WV+    +V+ L+ + AKKG  PS IG++LRDQ+G
Sbjct: 5   RPNGKSHSTRPVRSGAPKWVRFTREEVELLVEELAKKGYSPSMIGIILRDQYG 57

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>RS15_AERPE (Q9YCX3) 30S ribosomal protein S15P/S13e|
          Length = 150

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 24/53 (45%), Positives = 32/53 (60%)
 Frame = +1

Query: 88  RGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           R KG S S  P    PP W+     +++ LI + AKKG  PS IG++LRDQ+G
Sbjct: 5   REKGQSHSTRPPHPQPPQWLVFTPEEIELLIAELAKKGYGPSMIGIILRDQYG 57

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>RS15_METBF (Q46BC9) 30S ribosomal protein S15P/S13e|
          Length = 152

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M +MH++ KG SSS  P +  PP W K    +V  +     K+G   ++IG+ LRD++G
Sbjct: 1   MAKMHTKRKGKSSSTRPIRTEPPEWCKIGAEEVTTITLDLWKQGVSTAEIGMTLRDRYG 59

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>RS15_NATPD (Q3IQA3) 30S ribosomal protein S15P/S13e|
          Length = 154

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 34/57 (59%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQ 240
           M RMHSR +G S S  P    PP W +     +++ + + A++G  PSQIG+ LRD+
Sbjct: 1   MARMHSRRRGSSGSDRPTADEPPEWSEVDEDAIEDRVVELAEEGYDPSQIGLKLRDE 57

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>RS15_HALSA (Q9HRA2) 30S ribosomal protein S15P/S13e|
          Length = 155

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQ 240
           M RMH+R +G S S  P    PP W       ++E + + A++G  PSQIG+ LRD+
Sbjct: 1   MARMHTRRRGSSGSDRPTADEPPEWSDVDEDAIEERVVELAEQGHDPSQIGLKLRDE 57

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>RS15_METMP (Q6LWX5) 30S ribosomal protein S15P/S13e|
          Length = 151

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M R+HS  +G S S  P +   P WV  +  D++  I + AK G+  + IG +LRD +G
Sbjct: 1   MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYG 59

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>RS15_THEAC (Q9HJ42) 30S ribosomal protein S15P/S13e|
          Length = 145

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 25/59 (42%), Positives = 33/59 (55%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S   Y    PSW++ +  +V   I    K G  PS IG+ LRDQ+G
Sbjct: 1   MARMHTRKRGRSGSKKVYG-VQPSWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYG 58

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>RS13_ENCCU (Q8SRB3) 40S ribosomal protein S13|
          Length = 148

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 21/59 (35%), Positives = 31/59 (52%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M +MHS GKG S S  PY    P+W+  +  ++   + +   KG     IG  LRD++G
Sbjct: 1   MAKMHSSGKGRSGSVKPYATAFPTWLTKSVDEIKSDVIQMGNKGVPAPDIGTRLRDEYG 59

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>RS15_NANEQ (Q74MB8) 30S ribosomal protein S15P/S13e|
          Length = 154

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)
 Frame = +1

Query: 82  HSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           H R  G S S  P + T P W       V+  I + AK+G  P+ IG++LRDQ+G
Sbjct: 7   HKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYG 61

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>RS15_HALMA (P05762) 30S ribosomal protein S15P/S13e (HmaS15) (HS11)|
          Length = 155

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 20/55 (36%), Positives = 31/55 (56%)
 Frame = +1

Query: 76  RMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQ 240
           RMH+R +G S S  P    PP W       ++  + + A++G  PS+IG+ LRD+
Sbjct: 2   RMHTRRRGSSDSDKPAADEPPEWSDVDEDAIEARVVELAEQGHSPSEIGLKLRDE 56

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>RS15_METTH (O27474) 30S ribosomal protein S15P/S13e|
          Length = 134

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +1

Query: 136 PSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           P WV+ +  ++++LI K  ++G   S+IG++LRDQHG
Sbjct: 6   PDWVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHG 42

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>RS15_THEVO (Q979D0) 30S ribosomal protein S15P/S13e|
          Length = 145

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%)
 Frame = +1

Query: 70  MGRMHSRGKGISSSALPYKRTPPSWVKTAXADVDELITKAAKKGQMPSQIGVLLRDQHG 246
           M RMH+R +G S S   Y    P+WV+ +  ++  +     K G   S +G+ LRDQ+G
Sbjct: 1   MARMHTRKRGKSGSKKVYG-VEPNWVQYSKDEILNIAVDLKKSGMTSSVVGIRLRDQYG 58

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>RS13_MUSDO (P27072) 40S ribosomal protein S13 (Fragment)|
          Length = 114

 Score = 32.7 bits (73), Expect = 0.25
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 184 KAAKKGQMPSQIGVLLRDQHG 246
           K  KKG  PS+IG++LRD HG
Sbjct: 2   KLGKKGLTPSKIGIILRDSHG 22

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>RENT1_ARATH (Q9FJR0) Regulator of nonsense transcripts 1 homolog (EC 3.6.1.-)|
           (ATP-dependent helicase UPF1)
          Length = 1254

 Score = 30.8 bits (68), Expect = 0.97
 Identities = 13/27 (48%), Positives = 20/27 (74%)
 Frame = +1

Query: 148 KTAXADVDELITKAAKKGQMPSQIGVL 228
           +T  A+V++L+T   K G +PSQIGV+
Sbjct: 787 RTEAANVEKLVTAFLKSGVVPSQIGVI 813

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>RENT1_HUMAN (Q92900) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (hUpf1)
          Length = 1129

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 148 KTAXADVDELITKAAKKGQMPSQIGVL 228
           +T  A+V+++ TK  K G  P QIG++
Sbjct: 778 RTEAANVEKITTKLLKAGAKPDQIGII 804

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>RENT1_MOUSE (Q9EPU0) Regulator of nonsense transcripts 1 (EC 3.6.1.-)|
           (ATP-dependent helicase RENT1) (Nonsense mRNA reducing
           factor 1) (NORF1) (Up-frameshift suppressor 1 homolog)
           (mUpf1)
          Length = 1113

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 148 KTAXADVDELITKAAKKGQMPSQIGVL 228
           +T  A+V+++ TK  K G  P QIG++
Sbjct: 762 RTEAANVEKITTKLLKAGAKPDQIGII 788

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>ACCA_SYNY3 (P74638) Acetyl-coenzyme A carboxylase carboxyl transferase subunit|
           alpha (EC 6.4.1.2) (Acetyl-CoA carboxylase
           carboxyltransferase subunit alpha) (ACCase subunit
           alpha)
          Length = 326

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 240 LVAEQNTDLRGHLTLLRSLRDQLIHISXGGLDPARGSPLVRQRRRRDTL 94
           L  E+N D+   L+ L S  +QL       L+P++   L R  RR  TL
Sbjct: 30  LAEEKNVDVSEQLSQLESRAEQLRQEIFSNLNPSQRLQLARHPRRPSTL 78

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>PRIA_MYCTU (P0A5A5) Putative primosomal protein N' (EC 3.6.1.-) (ATP-dependent|
           helicase priA) (Replication factor Y)
          Length = 655

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 191 AAFVINSSTSAXAVLTQLGGVLLYGSADDEIPFPR 87
           A  VI + ++  A L++LG V+++  ADD +  PR
Sbjct: 222 ARLVIGTRSAVFAPLSELGLVMVWADADDSLAEPR 256

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>PRIA_MYCBO (P0A5A6) Putative primosomal protein N' (EC 3.6.1.-) (ATP-dependent|
           helicase priA) (Replication factor Y)
          Length = 655

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 191 AAFVINSSTSAXAVLTQLGGVLLYGSADDEIPFPR 87
           A  VI + ++  A L++LG V+++  ADD +  PR
Sbjct: 222 ARLVIGTRSAVFAPLSELGLVMVWADADDSLAEPR 256


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,698,615
Number of Sequences: 219361
Number of extensions: 435204
Number of successful extensions: 1066
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 80,573,946
effective HSP length: 58
effective length of database: 67,851,008
effective search space used: 1628424192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result