ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19j23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY736126.1| Triticum aestivum cytoplasmatic ribosomal protein... 381 e-103
2ref|XM_479793.1| Oryza sativa (japonica cultivar-group), mRNA 280 2e-72
3ref|XM_507561.1| PREDICTED Oryza sativa (japonica cultivar-group... 280 2e-72
4ref|XM_507099.2| PREDICTED Oryza sativa (japonica cultivar-group... 280 2e-72
5dbj|AK104147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 2e-72
6dbj|AK059505.1| Oryza sativa (japonica cultivar-group) cDNA clon... 280 2e-72
7dbj|AK058822.1| Oryza sativa (japonica cultivar-group) cDNA clon... 272 5e-70
8ref|XM_479792.1| Oryza sativa (japonica cultivar-group), mRNA 216 2e-53
9gb|AY105726.1| Zea mays PCO090232 mRNA sequence 192 4e-46
10gb|BT017933.1| Zea mays clone EL01N0520D05.c mRNA sequence 174 8e-41
11emb|X62455.1|ZMS13 Z.mays S13 mRNA for cytoplasmic ribosomal pro... 167 2e-38
12dbj|AK064865.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 1e-30
13dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
14dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic D... 125 7e-26
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
16dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
17dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
18ref|XM_478794.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
19gb|DQ056438.1| Lycopersicon esculentum cytoplasmic ribosomal pro... 54 2e-04
20dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
21dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
22dbj|AK063015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
23gb|AY453393.1| Glycine max ribosomal protein S13 (RPS13) mRNA, c... 50 0.003
24gb|AY950802.1| Bacteriophage SH1, complete genome 44 0.20
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 42 0.81
26emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 42 0.81
27gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 42 0.81
28ref|XM_481003.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.2
29ref|XM_883455.1| Leishmania major strain Friedlin hypothetical p... 40 3.2
30ref|XM_859809.1| PREDICTED: Canis familiaris similar to ribosoma... 40 3.2
31ref|XM_846944.1| PREDICTED: Canis familiaris similar to ribosoma... 40 3.2
32emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 3.2
33emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 3.2
34ref|XM_537358.2| PREDICTED: Canis familiaris similar to ribosoma... 40 3.2
35gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 3.2
36ref|XM_777038.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 3.2
37emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genom... 40 3.2
38emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 40 3.2
39dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 3.2
40gb|AE011648.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 3.2
41gb|AE012117.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 3.2
42gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 3.2
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
44dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
45dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 3.2
46dbj|AB113664.1| Iris hollandica Ih5GT mRNA for anthocyanin 5-O-g... 40 3.2
47dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.2
48dbj|AK070648.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.2
49emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 3.2
50gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 3.2
51gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.2
52emb|AL731743.2|CNS08C7S Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.2 
>gb|AY736126.1| Triticum aestivum cytoplasmatic ribosomal protein S13 mRNA,
           complete cds
          Length = 494

 Score =  381 bits (192), Expect = e-103
 Identities = 206/211 (97%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3   cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcggaaagg 62

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 122

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 tcgctgatgtcgacgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 182

                                          
Query: 218 tcggtgttctgctccgcgaccagcacggtat 248
           |||||||||||||||| ||||||||||||||
Sbjct: 183 tcggtgttctgctccgtgaccagcacggtat 213
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>ref|XM_479793.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 663

 Score =  280 bits (141), Expect = 2e-72
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 55  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 113

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 173

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 174 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 233

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  ||||||| |||||||||||
Sbjct: 234 tcggcgtggtgctccgtgaccagcacgg 261
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>ref|XM_507561.1| PREDICTED Oryza sativa (japonica cultivar-group), P0470F10.18 mRNA
          Length = 924

 Score =  280 bits (141), Expect = 2e-72
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 55  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 113

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 173

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 174 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 233

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  ||||||| |||||||||||
Sbjct: 234 tcggcgtggtgctccgtgaccagcacgg 261
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>ref|XM_507099.2| PREDICTED Oryza sativa (japonica cultivar-group), P0470F10.18 mRNA
          Length = 931

 Score =  280 bits (141), Expect = 2e-72
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 59  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 117

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 118 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 177

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 178 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 237

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  ||||||| |||||||||||
Sbjct: 238 tcggcgtggtgctccgtgaccagcacgg 265
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>dbj|AK104147.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D07, full
           insert sequence
          Length = 924

 Score =  280 bits (141), Expect = 2e-72
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 55  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 113

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 173

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 174 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 233

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  ||||||| |||||||||||
Sbjct: 234 tcggcgtggtgctccgtgaccagcacgg 261
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>dbj|AK059505.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A10, full
           insert sequence
          Length = 940

 Score =  280 bits (141), Expect = 2e-72
 Identities = 192/208 (92%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 68  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 126

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 127 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 186

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 187 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 246

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  ||||||| |||||||||||
Sbjct: 247 tcggcgtggtgctccgtgaccagcacgg 274
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>dbj|AK058822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-003-G11, full
           insert sequence
          Length = 663

 Score =  272 bits (137), Expect = 5e-70
 Identities = 191/208 (91%), Gaps = 1/208 (0%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcgggaagg 97
           ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct: 55  cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcgggaagg 113

                                                                       
Query: 98  gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaagaccgccg 157
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 114 gtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaagaccgccg 173

                                                                       
Query: 158 ncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcaga 217
            | | |||||||| ||| |||||| |||||| |||||||||||||||||||| |||||||
Sbjct: 174 cctccgatgtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcaga 233

                                       
Query: 218 tcggtgttctgctccgcgaccagcacgg 245
           |||| ||  | ||||| |||||||||||
Sbjct: 234 tcggcgtggtactccgtgaccagcacgg 261
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>ref|XM_479792.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 471

 Score =  216 bits (109), Expect = 2e-53
 Identities = 159/176 (90%)
 Strand = Plus / Plus

                                                                       
Query: 70  atggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaagagg 129
           |||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 1   atggggcgtatgcacagccgcgggaagggcatctcgtcgtcggcgattccgtacaagagg 60

                                                                       
Query: 130 actcccccgagctgggtcaagaccgccgncgctgatgtggatgagttgatcacgaaggct 189
           |||||||| ||||||||||||||||||| ||| |||||||| ||| |||||| |||||| 
Sbjct: 61  actcccccaagctgggtcaagaccgccgccgccgatgtggaggagatgatcatgaaggcc 120

                                                                   
Query: 190 gcgaagaagggtcagatgccctcgcagatcggtgttctgctccgcgaccagcacgg 245
           ||||||||||| |||||||| ||||||||||| ||  ||||||| |||||||||||
Sbjct: 121 gcgaagaagggccagatgccgtcgcagatcggcgtggtgctccgtgaccagcacgg 176
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>gb|AY105726.1| Zea mays PCO090232 mRNA sequence
          Length = 775

 Score =  192 bits (97), Expect = 4e-46
 Identities = 159/180 (88%)
 Strand = Plus / Plus

                                                                       
Query: 66  cgccatggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaa 125
           |||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 94  cgccatggggcgtatgcacagccgcgggaagggtatctcttcatcggcgctgccgtacaa 153

                                                                       
Query: 126 gaggactcccccgagctgggtcaagaccgccgncgctgatgtggatgagttgatcacgaa 185
           ||||||||| |||| |||| ||||||| ||   | | || ||||| ||| |||| || ||
Sbjct: 154 gaggactcctccgatctggctcaagacagctaccaccgaggtggaggagatgattaccaa 213

                                                                       
Query: 186 ggctgcgaagaagggtcagatgccctcgcagatcggtgttctgctccgcgaccagcacgg 245
           ||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 214 ggctgcgaagaagggccagatgccgtcgcagattggtgttctgctccgtgaccagcacgg 273
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>gb|BT017933.1| Zea mays clone EL01N0520D05.c mRNA sequence
          Length = 808

 Score =  174 bits (88), Expect = 8e-41
 Identities = 159/183 (86%)
 Strand = Plus / Plus

                                                                       
Query: 66  cgccatggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaa 125
           |||||||||||| ||||||||||||||||| |||||||| ||||||||||| || |||||
Sbjct: 88  cgccatggggcgtatgcacagccgcgggaatggtatctcatcgtcggcgcttccctacaa 147

                                                                       
Query: 126 gaggactcccccgagctgggtcaagaccgccgncgctgatgtggatgagttgatcacgaa 185
           |||||| || || | |||| |||||||||| | | | || ||||| ||| ||||||| ||
Sbjct: 148 gaggacgcctcctacctggctcaagaccgctgcctccgacgtggaggagatgatcacaaa 207

                                                                       
Query: 186 ggctgcgaagaagggtcagatgccctcgcagatcggtgttctgctccgcgaccagcacgg 245
           ||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 208 ggcagcgaagaagggacagatgccgtcgcagatcggcgtcctgctccgtgaccagcacgg 267

              
Query: 246 tat 248
           |||
Sbjct: 268 tat 270
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>emb|X62455.1|ZMS13 Z.mays S13 mRNA for cytoplasmic ribosomal protein S13
          Length = 717

 Score =  167 bits (84), Expect = 2e-38
 Identities = 158/183 (86%)
 Strand = Plus / Plus

                                                                       
Query: 66  cgccatggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaa 125
           ||||||||||   |||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct: 38  cgccatgggggctatgcacagccgcgggaagggtatctcatcgtcggcgcttccctacaa 97

                                                                       
Query: 126 gaggactcccccgagctgggtcaagaccgccgncgctgatgtggatgagttgatcacgaa 185
           |||||| || || | |||| |||||||||| | | | || ||||| ||| ||||||| ||
Sbjct: 98  gaggacgcctcctacctggctcaagaccgctgcctccgacgtggaggagatgatcacaaa 157

                                                                       
Query: 186 ggctgcgaagaagggtcagatgccctcgcagatcggtgttctgctccgcgaccagcacgg 245
           ||| ||||||||||| |||||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 158 ggcagcgaagaagggacagatgccgtcgcagatcggcgtcctgctccgtgaccagcacgg 217

              
Query: 246 tat 248
           |||
Sbjct: 218 tat 220
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>dbj|AK064865.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000I09, full
            insert sequence
          Length = 3363

 Score =  141 bits (71), Expect = 1e-30
 Identities = 133/154 (86%)
 Strand = Plus / Plus

                                                                        
Query: 92   ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
            |||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 1939 ggaagggtatctcgtcgtcggcgctgccgtgcaagaggattcccccgagcttgctcaaga 1998

                                                                        
Query: 152  ccgccgncgctgatgtggatgagttgatcacgaaggctgcgaagaagggtcagatgccct 211
             ||||| | |  ||||||| ||| |||||| |||||| ||||||| |||||||||| | |
Sbjct: 1999 acgccgcctccaatgtggaggagatgatcatgaaggccgcgaagatgggtcagatgtcgt 2058

                                              
Query: 212  cgcagatcggtgttctgctccgcgaccagcacgg 245
            ||||||| || ||| |||||||  ||||||||||
Sbjct: 2059 cgcagattggcgttgtgctccgtcaccagcacgg 2092
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  125 bits (63), Expect = 7e-26
 Identities = 74/78 (94%)
 Strand = Plus / Minus

                                                                          
Query: 92     ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 957971 ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaaga 957912

                                
Query: 152    ccgccgncgctgatgtgg 169
              |||||| | | |||||||
Sbjct: 957911 ccgccgcctccgatgtgg 957894



 Score =  107 bits (54), Expect = 2e-20
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 92     ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
              ||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 952096 ggaagggcatctcgtcgtcggcgattccgtacaagaggactcccccaagctgggtcaaga 952037

                               
Query: 152    ccgccgncgctgatgtg 168
              |||||| ||| ||||||
Sbjct: 952036 ccgccgccgccgatgtg 952020



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcagatcggtgtt 225
              ||||| ||| |||||| |||||| |||||||||||||||||||| ||||||||||| || 
Sbjct: 957780 gtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcagatcggcgtg 957721

                                  
Query: 226    ctgctccgcgaccagcacgg 245
               ||||||| |||||||||||
Sbjct: 957720 gtgctccgtgaccagcacgg 957701



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 53/56 (94%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 38     cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcggg 93
              ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 958128 cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcggg 958074



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcagatcggtgtt 225
              ||||| ||| |||||| |||||| ||||||||||| |||||||| ||||||||||| || 
Sbjct: 951918 gtggaggagatgatcatgaaggccgcgaagaagggccagatgccgtcgcagatcggcgtg 951859

                                  
Query: 226    ctgctccgcgaccagcacgg 245
               ||||||| |||||||||||
Sbjct: 951858 gtgctccgtgaccagcacgg 951839



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 68     ccatggggcgcatgcacagccgcggg 93
              |||||||||| |||||||||||||||
Sbjct: 952220 ccatggggcgtatgcacagccgcggg 952195



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 26      aaccgccgccgtcgtcgccg 45
               ||||||||||||||||||||
Sbjct: 9174019 aaccgccgccgtcgtcgccg 9174038
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>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0470F10
          Length = 185294

 Score =  125 bits (63), Expect = 7e-26
 Identities = 74/78 (94%)
 Strand = Plus / Minus

                                                                          
Query: 92     ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
              ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 120709 ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctggctcaaga 120650

                                
Query: 152    ccgccgncgctgatgtgg 169
              |||||| | | |||||||
Sbjct: 120649 ccgccgcctccgatgtgg 120632



 Score =  107 bits (54), Expect = 2e-20
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 92     ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
              ||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||
Sbjct: 114834 ggaagggcatctcgtcgtcggcgattccgtacaagaggactcccccaagctgggtcaaga 114775

                               
Query: 152    ccgccgncgctgatgtg 168
              |||||| ||| ||||||
Sbjct: 114774 ccgccgccgccgatgtg 114758



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcagatcggtgtt 225
              ||||| ||| |||||| |||||| |||||||||||||||||||| ||||||||||| || 
Sbjct: 120518 gtggaggagatgatcatgaaggccgcgaagaagggtcagatgccgtcgcagatcggcgtg 120459

                                  
Query: 226    ctgctccgcgaccagcacgg 245
               ||||||| |||||||||||
Sbjct: 120458 gtgctccgtgaccagcacgg 120439



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 53/56 (94%), Gaps = 1/56 (1%)
 Strand = Plus / Minus

                                                                      
Query: 38     cgtcgccggagctaaacccctcgcctgacgccatggggcgcatgcacagccgcggg 93
              ||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 120866 cgtcgccggagctaaacccctcgac-gccgccatggggcgcatgcacagccgcggg 120812



 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                          
Query: 166    gtggatgagttgatcacgaaggctgcgaagaagggtcagatgccctcgcagatcggtgtt 225
              ||||| ||| |||||| |||||| ||||||||||| |||||||| ||||||||||| || 
Sbjct: 114656 gtggaggagatgatcatgaaggccgcgaagaagggccagatgccgtcgcagatcggcgtg 114597

                                  
Query: 226    ctgctccgcgaccagcacgg 245
               ||||||| |||||||||||
Sbjct: 114596 gtgctccgtgaccagcacgg 114577



 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 68     ccatggggcgcatgcacagccgcggg 93
              |||||||||| |||||||||||||||
Sbjct: 114958 ccatggggcgtatgcacagccgcggg 114933
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                            
Query: 92       ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
                |||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 27687938 ggaagggtatctcgtcgtcggcgctgccgtgcaagaggattcccccgagcttgctcaaga 27687879

                      
Query: 152      ccgccg 157
                 |||||
Sbjct: 27687878 acgccg 27687873
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>dbj|AP006060.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0135D07
          Length = 170587

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                          
Query: 92     ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
              |||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 167607 ggaagggtatctcgtcgtcggcgctgccgtgcaagaggattcccccgagcttgctcaaga 167548

                    
Query: 152    ccgccg 157
               |||||
Sbjct: 167547 acgccg 167542
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>dbj|AP005775.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0005A04
          Length = 140723

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                         
Query: 92    ggaagggtatctcgtcgtcggcgctgccgtacaagaggactcccccgagctgggtcaaga 151
             |||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||||||
Sbjct: 73804 ggaagggtatctcgtcgtcggcgctgccgtgcaagaggattcccccgagcttgctcaaga 73745

                   
Query: 152   ccgccg 157
              |||||
Sbjct: 73744 acgccg 73739
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>ref|XM_478794.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 911

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 64  gacgccatggggcgcatgcacagccgcgggaaggg 98
           ||||||||||| |||||||||||| ||||||||||
Sbjct: 81  gacgccatgggccgcatgcacagcagcgggaaggg 115
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>gb|DQ056438.1| Lycopersicon esculentum cytoplasmic ribosomal protein S13 (ACI39)
           mRNA, complete cds
          Length = 700

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 66  cgccatggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaa 125
           ||||||||| || |||||||| ||||| |||||||||||  ||||||| || || |||||
Sbjct: 65  cgccatgggtcgtatgcacagtcgcggtaagggtatctcagcgtcggctcttccttacaa 124

              
Query: 126 gag 128
           |||
Sbjct: 125 gag 127
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 64       gacgccatggggcgcatgcacagccgcgggaaggg 98
                ||||||||||| |||||||||||| ||||||||||
Sbjct: 23099684 gacgccatgggccgcatgcacagcagcgggaaggg 23099718
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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1699_E05
          Length = 170666

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 64    gacgccatggggcgcatgcacagccgcgggaaggg 98
             ||||||||||| |||||||||||| ||||||||||
Sbjct: 43868 gacgccatgggccgcatgcacagcagcgggaaggg 43902
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>dbj|AK063015.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-A09, full
           insert sequence
          Length = 912

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 64  gacgccatggggcgcatgcacagccgcgggaaggg 98
           ||||||||||| |||||||||||| ||||||||||
Sbjct: 82  gacgccatgggccgcatgcacagcagcgggaaggg 116
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>gb|AY453393.1| Glycine max ribosomal protein S13 (RPS13) mRNA, complete cds
          Length = 742

 Score = 50.1 bits (25), Expect = 0.003
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                       
Query: 67  gccatggggcgcatgcacagccgcgggaagggtatctcgtcgtcggcgctgccgtacaag 126
           |||||||| || |||||||||||||| |||||||| || || || ||  |||| ||||| 
Sbjct: 91  gccatgggtcgtatgcacagccgcggtaagggtatatcctcttctgctttgccctacaaa 150

                                    
Query: 127 aggactcccccgagctgggtcaaga 151
           ||||| || || |||||| ||||||
Sbjct: 151 aggacacctcctagctggctcaaga 175
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>gb|AY950802.1| Bacteriophage SH1, complete genome
          Length = 30889

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 20    gcaggcaaccgccgccgtcgtcgccg 45
             |||||| |||||||||||||||||||
Sbjct: 17376 gcaggccaccgccgccgtcgtcgccg 17351
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 104    cgtcgtcggcgctgccgtaca 124
              |||||||||||||||||||||
Sbjct: 476217 cgtcgtcggcgctgccgtaca 476237
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 104     cgtcgtcggcgctgccgtaca 124
               |||||||||||||||||||||
Sbjct: 1795576 cgtcgtcggcgctgccgtaca 1795596
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 104     cgtcgtcggcgctgccgtaca 124
               |||||||||||||||||||||
Sbjct: 1287504 cgtcgtcggcgctgccgtaca 1287484
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>ref|XM_481003.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 315

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 26 aaccgccgccgtcgtcgccg 45
          ||||||||||||||||||||
Sbjct: 24 aaccgccgccgtcgtcgccg 5
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>ref|XM_883455.1| Leishmania major strain Friedlin hypothetical protein (L3291.01)
            partial mRNA
          Length = 9192

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 28   ccgccgccgtcgtcgccgga 47
            ||||||||||||||||||||
Sbjct: 4246 ccgccgccgtcgtcgccgga 4227
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>ref|XM_859809.1| PREDICTED: Canis familiaris similar to ribosomal protein S13,
           transcript variant 2 (LOC610820), mRNA
          Length = 614

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 193 aagaagggtcagatgccctcgcagatcggtgt 224
           |||||||||| ||  |||||||||||||||||
Sbjct: 199 aagaagggtctgactccctcgcagatcggtgt 230
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>ref|XM_846944.1| PREDICTED: Canis familiaris similar to ribosomal protein S13,
           transcript variant 1 (LOC610820), mRNA
          Length = 532

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 193 aagaagggtcagatgccctcgcagatcggtgt 224
           |||||||||| ||  |||||||||||||||||
Sbjct: 144 aagaagggtctgactccctcgcagatcggtgt 175
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     cccctcgcctgacgccatgg 73
              ||||||||||||||||||||
Sbjct: 279282 cccctcgcctgacgccatgg 279301
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    ccgccgccgtcgtcgccgga 47
             ||||||||||||||||||||
Sbjct: 22839 ccgccgccgtcgtcgccgga 22858
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>ref|XM_537358.2| PREDICTED: Canis familiaris similar to ribosomal protein S13
           (LOC480235), mRNA
          Length = 540

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 193 aagaagggtcagatgccctcgcagatcggtgt 224
           |||||||||| ||  |||||||||||||||||
Sbjct: 152 aagaagggtctgactccctcgcagatcggtgt 183
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 3       ttcgcgccgctgctgctgca 22
               ||||||||||||||||||||
Sbjct: 2765762 ttcgcgccgctgctgctgca 2765781
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>ref|XM_777038.1| PREDICTED: Strongylocentrotus purpuratus similar to Neutral and basic
            amino acid transport protein rBAT (B(0,+)-type amino acid
            transport protein) (NAA-TR) (D2) (LOC576765), mRNA
          Length = 3281

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   aggcaaccgccgccgtcgtc 41
            ||||||||||||||||||||
Sbjct: 1049 aggcaaccgccgccgtcgtc 1068
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>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16
          Length = 349746

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     cgccgctgctgctgcaggca 26
             ||||||||||||||||||||
Sbjct: 79844 cgccgctgctgctgcaggca 79825
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>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
              complete sequence
          Length = 149134

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 28     ccgccgccgtcgtcgccgga 47
              ||||||||||||||||||||
Sbjct: 141226 ccgccgccgtcgtcgccgga 141245
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      cccctcgcctgacgccatgg 73
               ||||||||||||||||||||
Sbjct: 4482531 cccctcgcctgacgccatgg 4482550
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>gb|AE011648.1| Xanthomonas axonopodis pv. citri str. 306,  section 26 of 469 of the
            complete genome
          Length = 9977

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   cccctcgcctgacgccatgg 73
            ||||||||||||||||||||
Sbjct: 1948 cccctcgcctgacgccatgg 1967
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>gb|AE012117.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 25
           of 460 of the complete genome
          Length = 10518

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  cccctcgcctgacgccatgg 73
           ||||||||||||||||||||
Sbjct: 613 cccctcgcctgacgccatgg 632
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     cccctcgcctgacgccatgg 73
              ||||||||||||||||||||
Sbjct: 267888 cccctcgcctgacgccatgg 267907
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 28      ccgccgccgtcgtcgccgga 47
               ||||||||||||||||||||
Sbjct: 6978355 ccgccgccgtcgtcgccgga 6978374
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 28       ccgccgccgtcgtcgccggagctaaacc 55
                ||||||||| || |||||||||||||||
Sbjct: 25137225 ccgccgccgccgccgccggagctaaacc 25137252
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 17      gctgcaggcaaccgccgccgtcgtcgcc 44
               ||||| |||||||||||| |||||||||
Sbjct: 7235917 gctgccggcaaccgccgcggtcgtcgcc 7235944
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>dbj|AB113664.1| Iris hollandica Ih5GT mRNA for anthocyanin 5-O-glucosyltransferase,
            complete cds
          Length = 1568

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 26   aaccgccgccgtcgtcgccg 45
            ||||||||||||||||||||
Sbjct: 1008 aaccgccgccgtcgtcgccg 989
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>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0012K14
          Length = 155544

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     aaccgccgccgtcgtcgccg 45
              ||||||||||||||||||||
Sbjct: 109513 aaccgccgccgtcgtcgccg 109532
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>dbj|AK070648.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B16, full
           insert sequence
          Length = 2047

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 28  ccgccgccgtcgtcgccggagctaaacc 55
           ||||||||| || |||||||||||||||
Sbjct: 257 ccgccgccgccgccgccggagctaaacc 230
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>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    cgccgccgtcgtcgccggag 48
             ||||||||||||||||||||
Sbjct: 75634 cgccgccgtcgtcgccggag 75653
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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      cccctcgcctgacgccatgg 73
               ||||||||||||||||||||
Sbjct: 4485094 cccctcgcctgacgccatgg 4485113
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 28       ccgccgccgtcgtcgccggagctaaacc 55
                ||||||||| || |||||||||||||||
Sbjct: 25065401 ccgccgccgccgccgccggagctaaacc 25065428
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>emb|AL731743.2|CNS08C7S Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 93872

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 28    ccgccgccgtcgtcgccggagctaaacc 55
             ||||||||| || |||||||||||||||
Sbjct: 63838 ccgccgccgccgccgccggagctaaacc 63811


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,788,317
Number of Sequences: 3902068
Number of extensions: 1788317
Number of successful extensions: 55051
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53799
Number of HSP's gapped (non-prelim): 1243
length of query: 248
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 226
effective length of database: 17,147,199,772
effective search space: 3875267148472
effective search space used: 3875267148472
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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