| Clone Name | bags19j06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_190777.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2286 Score = 184 bits (93), Expect = 2e-43 Identities = 267/325 (82%) Strand = Plus / Plus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattctctgcag 60 |||||||| ||||| ||||||| |||||||||||||| || || || |||| ||| ||| Sbjct: 1837 acaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcag 1896 Query: 61 cacctcaatgtctctcttctgaagatgcgcacaatcttcttagcaggccaacctgaggtt 120 |||| ||| |||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 1897 aacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggta 1956 Query: 121 acaactcagcttgccctcattcttctagcatcctctgcagttcttctcgtggttcctttc 180 || |||||| |||| || ||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 1957 acgactcaggttgctcttgttcttctagcatcatctgctgttcttcttgtggttcctttc 2016 Query: 181 agatacattcttgccgtctctacccttgatctattcacgagggagctagaattccggaga 240 | ||| ||||||| | | || |||||| |||||||||||| |||||||||||||| Sbjct: 2017 aaatatgttcttgcattttttatgtttgatcaattcacgagggaactagaattccggagg 2076 Query: 241 gaaatggtggcggcattcaaaagcttggtgaaggagcgatgggagtcgatacacgctgcc 300 || ||||| ||| |||| ||||| ||||||| || ||||| || ||||| ||||| Sbjct: 2077 gagatggtcaaggcgttcatgagcttcatgaaggaacggtgggaatctatacatgctgct 2136 Query: 301 cctgtgatcgtgctgccatacgagg 325 |||||| ||||| | ||||| |||| Sbjct: 2137 cctgtggtcgtgttaccatatgagg 2161
>dbj|AK121602.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041A14, full insert sequence Length = 2731 Score = 184 bits (93), Expect = 2e-43 Identities = 267/325 (82%) Strand = Plus / Plus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattctctgcag 60 |||||||| ||||| ||||||| |||||||||||||| || || || |||| ||| ||| Sbjct: 2231 acaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcag 2290 Query: 61 cacctcaatgtctctcttctgaagatgcgcacaatcttcttagcaggccaacctgaggtt 120 |||| ||| |||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 2291 aacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggta 2350 Query: 121 acaactcagcttgccctcattcttctagcatcctctgcagttcttctcgtggttcctttc 180 || |||||| |||| || ||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 2351 acgactcaggttgctcttgttcttctagcatcatctgctgttcttcttgtggttcctttc 2410 Query: 181 agatacattcttgccgtctctacccttgatctattcacgagggagctagaattccggaga 240 | ||| ||||||| | | || |||||| |||||||||||| |||||||||||||| Sbjct: 2411 aaatatgttcttgcattttttatgtttgatcaattcacgagggaactagaattccggagg 2470 Query: 241 gaaatggtggcggcattcaaaagcttggtgaaggagcgatgggagtcgatacacgctgcc 300 || ||||| ||| |||| ||||| ||||||| || ||||| || ||||| ||||| Sbjct: 2471 gagatggtcaaggcgttcatgagcttcatgaaggaacggtgggaatctatacatgctgct 2530 Query: 301 cctgtgatcgtgctgccatacgagg 325 |||||| ||||| | ||||| |||| Sbjct: 2531 cctgtggtcgtgttaccatatgagg 2555
>dbj|AK068777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013159O06, full insert sequence Length = 2135 Score = 184 bits (93), Expect = 2e-43 Identities = 267/325 (82%) Strand = Plus / Plus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattctctgcag 60 |||||||| ||||| ||||||| |||||||||||||| || || || |||| ||| ||| Sbjct: 1605 acaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcag 1664 Query: 61 cacctcaatgtctctcttctgaagatgcgcacaatcttcttagcaggccaacctgaggtt 120 |||| ||| |||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 1665 aacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggta 1724 Query: 121 acaactcagcttgccctcattcttctagcatcctctgcagttcttctcgtggttcctttc 180 || |||||| |||| || ||||||||||||| ||||| |||||||| |||||||||||| Sbjct: 1725 acgactcaggttgctcttgttcttctagcatcatctgctgttcttcttgtggttcctttc 1784 Query: 181 agatacattcttgccgtctctacccttgatctattcacgagggagctagaattccggaga 240 | ||| ||||||| | | || |||||| |||||||||||| |||||||||||||| Sbjct: 1785 aaatatgttcttgcattttttatgtttgatcaattcacgagggaactagaattccggagg 1844 Query: 241 gaaatggtggcggcattcaaaagcttggtgaaggagcgatgggagtcgatacacgctgcc 300 || ||||| ||| |||| ||||| ||||||| || ||||| || ||||| ||||| Sbjct: 1845 gagatggtcaaggcgttcatgagcttcatgaaggaacggtgggaatctatacatgctgct 1904 Query: 301 cctgtgatcgtgctgccatacgagg 325 |||||| ||||| | ||||| |||| Sbjct: 1905 cctgtggtcgtgttaccatatgagg 1929
>emb|AJ234880.1|HVU234880 Hordeum vulgare genomic DNA fragment; clone MWG2290 Length = 408 Score = 107 bits (54), Expect = 4e-20 Identities = 54/54 (100%) Strand = Plus / Plus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattct 54 |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 355 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattct 408
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattctctgcag 60 |||||||| ||||| ||||||| |||||||||||||| || || || |||| ||| ||| Sbjct: 37649316 acaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcag 37649257 Query: 61 cacctcaatgtctctcttctgaagatgcgcacaatcttcttagcaggccaacctgaggt 119 |||| ||| |||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 37649256 aacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggt 37649198 Score = 91.7 bits (46), Expect = 2e-15 Identities = 151/186 (81%) Strand = Plus / Minus Query: 140 ttcttctagcatcctctgcagttcttctcgtggttcctttcagatacattcttgccgtct 199 ||||||||||||| ||||| |||||||| ||||||||||||| ||| ||||||| | | Sbjct: 37649091 ttcttctagcatcatctgctgttcttcttgtggttcctttcaaatatgttcttgcatttt 37649032 Query: 200 ctacccttgatctattcacgagggagctagaattccggagagaaatggtggcggcattca 259 || |||||| |||||||||||| |||||||||||||| || ||||| ||| |||| Sbjct: 37649031 ttatgtttgatcaattcacgagggaactagaattccggagggagatggtcaaggcgttca 37648972 Query: 260 aaagcttggtgaaggagcgatgggagtcgatacacgctgcccctgtgatcgtgctgccat 319 ||||| ||||||| || ||||| || ||||| ||||| |||||| ||||| | |||| Sbjct: 37648971 tgagcttcatgaaggaacggtgggaatctatacatgctgctcctgtggtcgtgttaccat 37648912 Query: 320 acgagg 325 | |||| Sbjct: 37648911 atgagg 37648906
>dbj|AP003286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0677H08 Length = 178830 Score = 101 bits (51), Expect = 2e-18 Identities = 102/119 (85%) Strand = Plus / Minus Query: 1 acaatccagaagatcgtagctctcaaagaggcaatggcctcggtcgaaaattctctgcag 60 |||||||| ||||| ||||||| |||||||||||||| || || || |||| ||| ||| Sbjct: 109790 acaatccaaaagattatagctcttaaagaggcaatggcttcagtggagaattatcttcag 109731 Query: 61 cacctcaatgtctctcttctgaagatgcgcacaatcttcttagcaggccaacctgaggt 119 |||| ||| |||||||||| || || ||||||||||| |||||||||||||||||||| Sbjct: 109730 aacctgaatctctctcttcttaaaatacgcacaatctttttagcaggccaacctgaggt 109672 Score = 91.7 bits (46), Expect = 2e-15 Identities = 151/186 (81%) Strand = Plus / Minus Query: 140 ttcttctagcatcctctgcagttcttctcgtggttcctttcagatacattcttgccgtct 199 ||||||||||||| ||||| |||||||| ||||||||||||| ||| ||||||| | | Sbjct: 109565 ttcttctagcatcatctgctgttcttcttgtggttcctttcaaatatgttcttgcatttt 109506 Query: 200 ctacccttgatctattcacgagggagctagaattccggagagaaatggtggcggcattca 259 || |||||| |||||||||||| |||||||||||||| || ||||| ||| |||| Sbjct: 109505 ttatgtttgatcaattcacgagggaactagaattccggagggagatggtcaaggcgttca 109446 Query: 260 aaagcttggtgaaggagcgatgggagtcgatacacgctgcccctgtgatcgtgctgccat 319 ||||| ||||||| || ||||| || ||||| ||||| |||||| ||||| | |||| Sbjct: 109445 tgagcttcatgaaggaacggtgggaatctatacatgctgctcctgtggtcgtgttaccat 109386 Query: 320 acgagg 325 | |||| Sbjct: 109385 atgagg 109380
>gb|BC081272.1| Xenopus laevis MGC86435 protein, mRNA (cDNA clone MGC:86435 IMAGE:7012000), complete cds Length = 3558 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 462 ttgtaatgtacagttttttgta 483 |||||||||||||||||||||| Sbjct: 2865 ttgtaatgtacagttttttgta 2886
>gb|U76636.1|XLU76636 Xenopus laevis calbindin D28k mRNA, complete cds Length = 3597 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 462 ttgtaatgtacagttttttgta 483 |||||||||||||||||||||| Sbjct: 2690 ttgtaatgtacagttttttgta 2711
>emb|AL161431.28| Human DNA sequence from clone RP11-54H7 on chromosome 13 Contains the 3' end a novel gene (including KIAA0865) possible ortholog of rat myosin heavy chain Myr 8 (Loc192253) and 2 novel genes, complete sequence Length = 143802 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gcgttgtgttgtaatgtacag 474 ||||||||||||||||||||| Sbjct: 36406 gcgttgtgttgtaatgtacag 36386
>gb|AC154532.3| Mus musculus BAC clone RP23-469G7 from 14, complete sequence Length = 193236 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 160 gttcttctcgtggttcctttc 180 ||||||||||||||||||||| Sbjct: 176197 gttcttctcgtggttcctttc 176177
>emb|CT030238.7| Mouse DNA sequence from clone RP23-428E20 on chromosome 14, complete sequence Length = 194408 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 471 acagttttttgtacagttgta 491 ||||||||||||||||||||| Sbjct: 129215 acagttttttgtacagttgta 129195
>emb|AL627307.18| Mouse DNA sequence from clone RP23-258J11 on chromosome 4, complete sequence Length = 108542 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 cattcttctagcatcctctgc 158 ||||||||||||||||||||| Sbjct: 50727 cattcttctagcatcctctgc 50707
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cttggtgaaggagcgatggg 283 |||||||||||||||||||| Sbjct: 3609574 cttggtgaaggagcgatggg 3609555
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 cttggtgaaggagcgatggg 283 |||||||||||||||||||| Sbjct: 3609743 cttggtgaaggagcgatggg 3609724
>gb|AC153571.14| Mus musculus 10 BAC RP23-309H16 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 184967 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 ctccccgcaaaagcttccag 368 |||||||||||||||||||| Sbjct: 161444 ctccccgcaaaagcttccag 161425
>emb|AJ616006.1| Bacillus licheniformis yvhJ gene (partial), yvyE gene, degS gene, degU gene, yviA gene and comFA gene (partial) Length = 4550 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cttggtgaaggagcgatggg 283 |||||||||||||||||||| Sbjct: 4088 cttggtgaaggagcgatggg 4107
>emb|BX901878.6| Zebrafish DNA sequence from clone DKEY-11O15 in linkage group 21, complete sequence Length = 217310 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 469 gtacagttttttgtacagtt 488 |||||||||||||||||||| Sbjct: 14748 gtacagttttttgtacagtt 14767
>gb|AC090041.13| Homo sapiens 12 BAC RP11-239F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 108979 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 456 gttgtgttgtaatgtacagttttt 479 ||||| |||||||||||||||||| Sbjct: 59936 gttgttttgtaatgtacagttttt 59913
>gb|AF459920.1| Bacillus licheniformis hypothetical protein YviA (yviA), late competence protein ComFA (comFA), late competence protein ComFB (comFB), and late competence protein ComFC (comFC) genes, complete cds Length = 3630 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 264 cttggtgaaggagcgatggg 283 |||||||||||||||||||| Sbjct: 967 cttggtgaaggagcgatggg 986
>gb|AE005898.1| Caulobacter crescentus CB15 section 224 of 359 of the complete genome Length = 11272 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tgcagttcttctcgtggttc 175 |||||||||||||||||||| Sbjct: 10125 tgcagttcttctcgtggttc 10106
>gb|AC092468.9| Homo sapiens 3 BAC RP11-326J18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114428 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 caaaagcttccaggcagaca 375 |||||||||||||||||||| Sbjct: 60264 caaaagcttccaggcagaca 60283
>gb|AC016604.6| Homo sapiens chromosome 5 clone CTD-2150I21, complete sequence Length = 94147 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gtagtgtgaggcgttgtgtt 463 |||||||||||||||||||| Sbjct: 14582 gtagtgtgaggcgttgtgtt 14601
>gb|AC016635.8| Homo sapiens chromosome 5 clone RP11-313I12, complete sequence Length = 163536 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtagtgtgaggcgttgtgtt 463 |||||||||||||||||||| Sbjct: 59809 gtagtgtgaggcgttgtgtt 59790
>gb|AC008926.8| Homo sapiens chromosome 5 clone CTD-2285N11, complete sequence Length = 104088 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtagtgtgaggcgttgtgtt 463 |||||||||||||||||||| Sbjct: 1831 gtagtgtgaggcgttgtgtt 1812
>gb|AF000070.1|AF000070 Thysanoteuthis rhombus cytochrome c oxidase subunit I (COI) gene, mitochondrial gene encoding mitochondrial protein, partial cds Length = 657 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 cttctagcatcctctgcagt 161 |||||||||||||||||||| Sbjct: 286 cttctagcatcctctgcagt 305 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,892,742 Number of Sequences: 3902068 Number of extensions: 3892742 Number of successful extensions: 64682 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64578 Number of HSP's gapped (non-prelim): 104 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)