| Clone Name | bags19h18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008941.1| Triticum aestivum clone wdk1c.pk0002.b5:fis, full insert mRNA sequence Length = 697 Score = 375 bits (189), Expect = e-100 Identities = 292/321 (90%), Gaps = 9/321 (2%) Strand = Plus / Plus Query: 11 caccccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccga 70 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 180 cacccccgtcgccaaggccacatggcgcgaggccaaggagtgcatctacgtcgagcccga 239 Query: 71 ggaccgcaagggggtcttctggtacagcaacaagttctagccgcaaggatcgtcatcagc 130 ||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| | Sbjct: 240 ggaccgcaagggggtcttctggtacagcaacaagttctagccgtcaagatc--catcaac 297 Query: 131 cgtgttccaggaagaactcagagaagaggtccttacaagtaa-tccatccatctaccta- 188 ||| || || ||||||||||||||||| |||| ||||||| |||||||||||||||| Sbjct: 298 ggtgctcgagaaagaactcagagaagagatcctaccaagtaattccatccatctacctac 357 Query: 189 ---catatggttagtttttagatagcagagggcatttgggcac-aaacaagactactatt 244 |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| Sbjct: 358 agtcatatggttagtctttagatagcagagggcatttgggcacaaaagaagactactatt 417 Query: 245 accgtgccaatgctagaaagagttgagtggtgcaaggaggagtagcgtgtccgtgacttt 304 ||||||||| |||||| ||||| ||||||||||||||| ||||||||||||||||||||| Sbjct: 418 accgtgccagtgctag-aagagctgagtggtgcaaggaagagtagcgtgtccgtgacttt 476 Query: 305 tgtcagttccttctttacttt 325 ||||||||| |||||||||| Sbjct: 477 ggtcagttccgtctttacttt 497 Score = 163 bits (82), Expect = 7e-37 Identities = 92/94 (97%), Gaps = 1/94 (1%) Strand = Plus / Plus Query: 400 cgtctgtcattgcattggcgtcatctccccccgtccgtgtcatgttgttgtagaccattt 459 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 587 cgtctgtcattgcattggcgtcatctccccccgtccgtgtcatgttgttgtagaccattt 646 Query: 460 cgtgttttatggcggaataactgatcatcgaagg 493 |||| ||||||||||||||||||||| ||||||| Sbjct: 647 cgtg-tttatggcggaataactgatcgtcgaagg 679 Score = 42.1 bits (21), Expect = 1.8 Identities = 36/41 (87%) Strand = Plus / Plus Query: 343 gccggcggtcgttgttggtgtccgtggccattgacatggcc 383 |||||| ||||| || ||||||||||||| | ||||||||| Sbjct: 530 gccggctgtcgtcgtcggtgtccgtggccgtggacatggcc 570
>gb|BT017335.1| Zea mays clone EL01N0321B07.c mRNA sequence Length = 860 Score = 133 bits (67), Expect = 6e-28 Identities = 94/103 (91%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| || |||||||| || ||||||||||||| ||||||||||||||| ||||||||| Sbjct: 496 acccctgttgccaaggcgacctggcgcgaggccagggagtgcatctacgtcgagcccgag 555 Query: 72 gaccgcaagggggtcttctggtacagcaacaagttctagccgc 114 ||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct: 556 gaccgcaagggcgtcttctggtacaacaagaagttctagccgc 598
>gb|AY104050.1| Zea mays PCO088038 mRNA sequence Length = 1856 Score = 133 bits (67), Expect = 6e-28 Identities = 94/103 (91%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| || |||||||| || ||||||||||||| ||||||||||||||| ||||||||| Sbjct: 1230 acccctgttgccaaggcgacctggcgcgaggccagggagtgcatctacgtcgagcccgag 1289 Query: 72 gaccgcaagggggtcttctggtacagcaacaagttctagccgc 114 ||||||||||| ||||||||||||| ||| ||||||||||||| Sbjct: 1290 gaccgcaagggcgtcttctggtacaacaagaagttctagccgc 1332
>ref|XM_467474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1701 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 1235 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 1294 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 1295 aagggcgtcttctggtacaacaacaagttcta 1326
>ref|XM_506939.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1191_G08.29 mRNA Length = 1856 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 1233 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 1292 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 1293 aagggcgtcttctggtacaacaacaagttcta 1324
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 29744460 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 29744401 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 29744400 aagggcgtcttctggtacaacaacaagttcta 29744369
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 805 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 746 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 745 aagggcgtcttctggtacaacaacaagttcta 714
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Minus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 113439 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 113380 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 113379 aagggcgtcttctggtacaacaacaagttcta 113348
>dbj|AK072282.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010C06, full insert sequence Length = 1700 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 1234 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 1293 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 1294 aagggcgtcttctggtacaacaacaagttcta 1325
>dbj|AK065239.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I05, full insert sequence Length = 1856 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 1233 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 1292 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 1293 aagggcgtcttctggtacaacaacaagttcta 1324
>dbj|AK061506.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F04, full insert sequence Length = 1177 Score = 127 bits (64), Expect = 4e-26 Identities = 85/92 (92%) Strand = Plus / Plus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||| | Sbjct: 539 gtcgccaaggcgacatggcgcgaggccaaggagtgcatctacgtcgagcctgaggacaac 598 Query: 78 aagggggtcttctggtacagcaacaagttcta 109 ||||| ||||||||||||| |||||||||||| Sbjct: 599 aagggcgtcttctggtacaacaacaagttcta 630
>gb|AY581826.1| Cynodon dactylon putative delta-12 oleate desaturase-like mRNA, partial sequence Length = 1037 Score = 121 bits (61), Expect = 2e-24 Identities = 82/89 (92%) Strand = Plus / Plus Query: 21 gccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaag 80 |||||||| || ||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct: 578 gccaaggcgacgtggcgcgaggccaaggagtgcatctacgtcgagcctgaggaccgcaag 637 Query: 81 ggggtcttctggtacagcaacaagttcta 109 || ||||| ||||||| |||||||||||| Sbjct: 638 ggcgtcttttggtacaacaacaagttcta 666
>gb|DQ496227.1| Zea mays FAD2 (FAD2) gene, complete cds Length = 1164 Score = 109 bits (55), Expect = 9e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| || |||||||| || |||||||||||| ||| ||||||||||| ||||||||| Sbjct: 1066 acccctgtggccaaggcgacctggcgcgaggccggggaatgcatctacgtcgagcccgag 1125 Query: 72 gaccgcaagggggtcttctggtacagcaacaagttctag 110 ||||||||||| ||||||||||||| ||| ||||||||| Sbjct: 1126 gaccgcaagggcgtcttctggtacaacaagaagttctag 1164
>dbj|AB257309.1| Zea mays FAD2 gene for delta-12 fatty acid desaturase, complete cds Length = 1164 Score = 109 bits (55), Expect = 9e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| || |||||||| || |||||||||||| ||| ||||||||||| ||||||||| Sbjct: 1066 acccctgtggccaaggcgacctggcgcgaggccggggaatgcatctacgtcgagcccgag 1125 Query: 72 gaccgcaagggggtcttctggtacagcaacaagttctag 110 ||||||||||| ||||||||||||| ||| ||||||||| Sbjct: 1126 gaccgcaagggcgtcttctggtacaacaagaagttctag 1164
>ref|NM_188189.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1360 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 23 caaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggg 82 |||||| | |||||||||||| ||||||||||||||| | || ||||||||| |||||| Sbjct: 1139 caaggcgatatggcgcgaggctaaggagtgcatctacatccagtccgaggaccacaaggg 1198 Query: 83 ggtcttctggtacagcaacaagttctag 110 ||||||||||||||||||||||||||| Sbjct: 1199 cgtcttctggtacagcaacaagttctag 1226
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 23 caaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggg 82 |||||| | |||||||||||| ||||||||||||||| | || ||||||||| |||||| Sbjct: 13147828 caaggcgatatggcgcgaggctaaggagtgcatctacatccagtccgaggaccacaaggg 13147769 Query: 83 ggtcttctggtacagcaacaagttctag 110 ||||||||||||||||||||||||||| Sbjct: 13147768 cgtcttctggtacagcaacaagttctag 13147741 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 |||| |||||| | |||||||||||| ||||||||||||||| | || || |||||| | Sbjct: 13127366 gtcgtcaaggcgatatggcgcgaggctaaggagtgcatctacatccagtccaaggaccac 13127307 Query: 78 aagggggtcttctggtacagcaacaagttctag 110 ||||| |||||||||||| |||||||||||||| Sbjct: 13127306 aagggcgtcttctggtactgcaacaagttctag 13127274 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 25 aggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggggg 84 |||| |||||||| ||||||||||||||||| |||||||||||| ||| ||| | || Sbjct: 13170776 aggcaacatggcgtgaggccaaggagtgcatgtacgttgagcccagggagcgcgatggta 13170835 Query: 85 tcttctggtacagcaacaagttctagc 111 ||| |||||||| ||||||||| |||| Sbjct: 13170836 tctactggtacaacaacaagttttagc 13170862
>dbj|AP005168.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06 Length = 154025 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 23 caaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggg 82 |||||| | |||||||||||| ||||||||||||||| | || ||||||||| |||||| Sbjct: 66155 caaggcgatatggcgcgaggctaaggagtgcatctacatccagtccgaggaccacaaggg 66096 Query: 83 ggtcttctggtacagcaacaagttctag 110 ||||||||||||||||||||||||||| Sbjct: 66095 cgtcttctggtacagcaacaagttctag 66068 Score = 89.7 bits (45), Expect = 8e-15 Identities = 81/93 (87%) Strand = Plus / Minus Query: 18 gtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgc 77 |||| |||||| | |||||||||||| ||||||||||||||| | || || |||||| | Sbjct: 45693 gtcgtcaaggcgatatggcgcgaggctaaggagtgcatctacatccagtccaaggaccac 45634 Query: 78 aagggggtcttctggtacagcaacaagttctag 110 ||||| |||||||||||| |||||||||||||| Sbjct: 45633 aagggcgtcttctggtactgcaacaagttctag 45601 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 25 aggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggggg 84 |||| |||||||| ||||||||||||||||| |||||||||||| ||| ||| | || Sbjct: 89103 aggcaacatggcgtgaggccaaggagtgcatgtacgttgagcccagggagcgcgatggta 89162 Query: 85 tcttctggtacagcaacaagttctagc 111 ||| |||||||| ||||||||| |||| Sbjct: 89163 tctactggtacaacaacaagttttagc 89189
>dbj|AK070559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060M02, full insert sequence Length = 1361 Score = 103 bits (52), Expect = 6e-19 Identities = 79/88 (89%) Strand = Plus / Plus Query: 23 caaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggg 82 |||||| | |||||||||||| ||||||||||||||| | || ||||||||| |||||| Sbjct: 1140 caaggcgatatggcgcgaggctaaggagtgcatctacatccagtccgaggaccacaaggg 1199 Query: 83 ggtcttctggtacagcaacaagttctag 110 ||||||||||||||||||||||||||| Sbjct: 1200 cgtcttctggtacagcaacaagttctag 1227
>gb|BT018494.1| Zea mays clone EL01N0425H05.d mRNA sequence Length = 1686 Score = 99.6 bits (50), Expect = 9e-18 Identities = 94/109 (86%), Gaps = 6/109 (5%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| Sbjct: 1157 acccctgtcgccaaggccacctggcgcgaggccagggagtgcatctacgtcgagcctgag 1216 Query: 72 ------gaccgcaagggggtcttctggtacagcaacaagttctagccgc 114 |||||||||| ||||||||||||| || |||||||||||||| Sbjct: 1217 aaccgcaaccgcaagggcgtcttctggtacaacagcaagttctagccgc 1265
>gb|BT016850.1| Zea mays clone Contig683 mRNA sequence Length = 790 Score = 99.6 bits (50), Expect = 9e-18 Identities = 94/109 (86%), Gaps = 6/109 (5%) Strand = Plus / Minus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| Sbjct: 541 acccctgtcgccaaggccacctggcgcgaggccagggagtgcatctacgtcgagcctgag 482 Query: 72 ------gaccgcaagggggtcttctggtacagcaacaagttctagccgc 114 |||||||||| ||||||||||||| || |||||||||||||| Sbjct: 481 aaccgcaaccgcaagggcgtcttctggtacaacagcaagttctagccgc 433
>gb|AY581828.1| Cynodon dactylon putative delta-12 oleate desaturase mRNA, partial cds Length = 451 Score = 99.6 bits (50), Expect = 9e-18 Identities = 68/74 (91%) Strand = Plus / Plus Query: 33 tggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaagggggtcttctgg 92 ||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct: 4 tggcgcgaggccaaggagtgcatttacgtcgagcctgaggaccgcaagggcgtcttttgg 63 Query: 93 tacagcaacaagtt 106 |||| ||||||||| Sbjct: 64 tacaacaacaagtt 77
>gb|AY108438.1| Zea mays PCO088036 mRNA sequence Length = 777 Score = 99.6 bits (50), Expect = 9e-18 Identities = 94/109 (86%), Gaps = 6/109 (5%) Strand = Plus / Plus Query: 12 accccggtcgccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgag 71 ||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| ||| Sbjct: 244 acccctgtcgccaaggccacctggcgcgaggccagggagtgcatctacgtcgagcctgag 303 Query: 72 ------gaccgcaagggggtcttctggtacagcaacaagttctagccgc 114 |||||||||| ||||||||||||| || |||||||||||||| Sbjct: 304 aaccgcaaccgcaagggcgtcttctggtacaacagcaagttctagccgc 352
>ref|NM_188193.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1267 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 25 aggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggggg 84 |||| |||||||| ||||||||||||||||| |||||||||||| ||| ||| | || Sbjct: 1064 aggcaacatggcgtgaggccaaggagtgcatgtacgttgagcccagggagcgcgatggta 1123 Query: 85 tcttctggtacagcaacaagttctagc 111 ||| |||||||| ||||||||| |||| Sbjct: 1124 tctactggtacaacaacaagttttagc 1150
>dbj|AK105371.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-C08, full insert sequence Length = 1267 Score = 69.9 bits (35), Expect = 8e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 25 aggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaaggggg 84 |||| |||||||| ||||||||||||||||| |||||||||||| ||| ||| | || Sbjct: 1064 aggcaacatggcgtgaggccaaggagtgcatgtacgttgagcccagggagcgcgatggta 1123 Query: 85 tcttctggtacagcaacaagttctagc 111 ||| |||||||| ||||||||| |||| Sbjct: 1124 tctactggtacaacaacaagttttagc 1150
>gb|AF457960.1| Zea mays clone csi1n.pk0007.c2, mRNA sequence Length = 590 Score = 48.1 bits (24), Expect = 0.029 Identities = 67/76 (88%), Gaps = 4/76 (5%) Strand = Plus / Plus Query: 21 gccaaggccacatggcgcgaggccaaggagtgcatctacgttgagcccgaggaccgcaag 80 |||||||| || ||||||||||| | ||||||||||||| | || ||||||||||||||| Sbjct: 322 gccaaggcgacctggcgcgaggc-agggagtgcatctac-tcga-cccgaggaccgcaag 378 Query: 81 ggggtcttctggtaca 96 || ||| ||||||||| Sbjct: 379 ggcgtc-tctggtaca 393
>gb|AY489049.1| Capsicum annuum D12 oleate desaturase mRNA, partial sequence Length = 693 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 39 gaggccaaggagtgcatctacgttgag 65 ||||| ||||||||||||||||||||| Sbjct: 565 gaggcaaaggagtgcatctacgttgag 591
>gb|AC108856.20| Mus musculus chromosome 8, clone RP24-355A11, complete sequence Length = 203330 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 132 gtgttccaggaagaactcagagaagag 158 ||||| ||||||||||||||||||||| Sbjct: 23750 gtgttacaggaagaactcagagaagag 23724
>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105 Length = 340000 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 171 aatccatccatctacctacatat 193 ||||||||||||||||||||||| Sbjct: 110068 aatccatccatctacctacatat 110046
>dbj|AP000161.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 13/16, complete sequence Length = 100000 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 171 aatccatccatctacctacatat 193 ||||||||||||||||||||||| Sbjct: 96485 aatccatccatctacctacatat 96463
>dbj|AP000020.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 11/13 Length = 100000 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 171 aatccatccatctacctacatat 193 ||||||||||||||||||||||| Sbjct: 30881 aatccatccatctacctacatat 30859
>dbj|AP001434.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T2079, LB7T-ERG region, complete sequence Length = 74817 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 171 aatccatccatctacctacatat 193 ||||||||||||||||||||||| Sbjct: 31536 aatccatccatctacctacatat 31514
>gb|AC103758.14| Homo sapiens chromosome 8, clone CTD-3135A9, complete sequence Length = 235357 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 atccatccatctacctacatat 193 |||||||||||||||||||||| Sbjct: 53918 atccatccatctacctacatat 53897 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 172 atccatccatctacctacatat 193 |||||||||||||||||||||| Sbjct: 53778 atccatccatctacctacatat 53757
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 139 aggaagaactcagagaagaggtcct 163 |||||||||||| |||||||||||| Sbjct: 19398 aggaagaactcaaagaagaggtcct 19422
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2203586 tgtcatgttgttgtagaccat 2203606
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2274265 tgtcatgttgttgtagaccat 2274285
>gb|AC078830.7| Staphylococcus aureus clone sabac-115, complete sequence Length = 44051 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 12198 tgtcatgttgttgtagaccat 12218
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2199375 tgtcatgttgttgtagaccat 2199395
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2210100 tgtcatgttgttgtagaccat 2210120
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2263177 tgtcatgttgttgtagaccat 2263197
>gb|AC025592.10| Staphylococcus aureus clone sabac-43, complete sequence Length = 55389 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 23437 tgtcatgttgttgtagaccat 23457
>gb|AC078934.3| Staphylococcus aureus clone sabac-11, complete sequence Length = 55390 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 23437 tgtcatgttgttgtagaccat 23457
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2224481 tgtcatgttgttgtagaccat 2224501
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2197833 tgtcatgttgttgtagaccat 2197853
>emb|BX649423.7| Zebrafish DNA sequence from clone DKEY-18O7 in linkage group 4, complete sequence Length = 182374 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 172 atccatccatctacctacata 192 ||||||||||||||||||||| Sbjct: 28574 atccatccatctacctacata 28594
>gb|U67965.1|SAU67965 Staphylococcus aureus lytic regulatory protein gene, complete cds Length = 6779 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 258 tgtcatgttgttgtagaccat 278
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2302183 tgtcatgttgttgtagaccat 2302203
>gb|AF044951.1|AF044951 Staphylococcus aureus repressor protein (rzcA) and transport protein (rzcB) genes, complete cds Length = 2016 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 1286 tgtcatgttgttgtagaccat 1306
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 2161986 tgtcatgttgttgtagaccat 2162006
>dbj|AB016431.1| Staphylococcus aureus, zinc responsible operon czr genes, complete and partial cds Length = 3754 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 437 tgtcatgttgttgtagaccat 457 ||||||||||||||||||||| Sbjct: 933 tgtcatgttgttgtagaccat 913
>gb|AC110252.25| Mus musculus chromosome 6, clone RP23-267G12, complete sequence Length = 172806 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 atccatccatctacctacat 191 |||||||||||||||||||| Sbjct: 26512 atccatccatctacctacat 26493
>ref|XM_513260.1| PREDICTED: Pan troglodytes LOC456689 (LOC456689), mRNA Length = 3078 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 556 caggaagaactcagagaaga 575
>gb|BC081539.1| Homo sapiens cDNA clone IMAGE:6142233 Length = 6031 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 5264 caggaagaactcagagaaga 5245
>gb|AC106830.11| Mus musculus chromosome 15, clone RP24-402C20, complete sequence Length = 171577 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 acaagtaatccatccatcta 184 |||||||||||||||||||| Sbjct: 55758 acaagtaatccatccatcta 55739
>gb|AC129318.4| Mus musculus BAC clone RP23-464B17 from chromosome 6, complete sequence Length = 162905 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tcagttccttctttactttc 326 |||||||||||||||||||| Sbjct: 139420 tcagttccttctttactttc 139439
>gb|AC127376.3| Mus musculus BAC clone RP23-49A4 from chromosome 6, complete sequence Length = 204528 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 atccatccatctacctacat 191 |||||||||||||||||||| Sbjct: 33174 atccatccatctacctacat 33193
>gb|AC125112.3| Mus musculus BAC clone RP24-239I23 from chromosome 2, complete sequence Length = 149339 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 taatccatccatctacctac 189 |||||||||||||||||||| Sbjct: 76930 taatccatccatctacctac 76911
>gb|BC039079.1| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked), mRNA (cDNA clone MGC:34494 IMAGE:5167140), complete cds Length = 2486 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 672 caggaagaactcagagaaga 691
>gb|BC114450.1| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked), mRNA (cDNA clone IMAGE:40001732), partial cds Length = 2812 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 209 caggaagaactcagagaaga 228
>gb|BC113841.1| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked), mRNA (cDNA clone IMAGE:40001733), partial cds Length = 2620 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 209 caggaagaactcagagaaga 228
>emb|AL138785.8| Human DNA sequence from clone RP4-604A21 on chromosome 1 Contains part of the EPB41 gene for erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) and a ribosomal protein L27 (RPL27) pseudogene, complete sequence Length = 109609 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 36745 caggaagaactcagagaaga 36764
>emb|CR759889.5| Zebrafish DNA sequence from clone DKEY-172F14 in linkage group 5, complete sequence Length = 129171 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 atccatccatctacctacat 191 |||||||||||||||||||| Sbjct: 94485 atccatccatctacctacat 94466
>gb|BC096105.1| Homo sapiens cDNA clone IMAGE:40001729, partial cds Length = 2815 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 209 caggaagaactcagagaaga 228
>gb|AC155817.2| Mus musculus BAC clone RP23-473M8 from chromosome 12, complete sequence Length = 159497 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ttccttctttactttcctcc 330 |||||||||||||||||||| Sbjct: 25993 ttccttctttactttcctcc 25974
>gb|AC154405.2| Mus musculus BAC clone RP24-248O10 from chromosome 12, complete sequence Length = 158411 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ttccttctttactttcctcc 330 |||||||||||||||||||| Sbjct: 123478 ttccttctttactttcctcc 123459
>dbj|BS000127.1| Pan troglodytes chromosome 22 clone:PTB-099K02, map 22, complete sequences Length = 191424 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 aatccatccatctacctaca 190 |||||||||||||||||||| Sbjct: 124641 aatccatccatctacctaca 124622
>dbj|AK110327.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-164-D08, full insert sequence Length = 2577 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 cggcggtcgttgttggtgtc 364 |||||||||||||||||||| Sbjct: 620 cggcggtcgttgttggtgtc 601
>gb|AC151055.3| Mus musculus BAC clone RP23-24A9 from 6, complete sequence Length = 230998 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tcagttccttctttactttc 326 |||||||||||||||||||| Sbjct: 35455 tcagttccttctttactttc 35474
>gb|AF156226.1|AF156226 Homo sapiens protein 4.1 (EPB4.1) gene, exon 4 and partial cds Length = 213 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 7 caggaagaactcagagaaga 26
>gb|AC107773.9| Mus musculus chromosome 18, clone RP23-102H15, complete sequence Length = 250096 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 tccaggaagaactcagagaagagg 159 |||| ||||||||||||||||||| Sbjct: 104931 tccaagaagaactcagagaagagg 104954
>gb|AC005544.1|AC005544 Homo sapiens chromosome 17, clone hRPK.349_A_8, complete sequence Length = 169045 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 tccttctttactttcctcct 331 |||||||||||||||||||| Sbjct: 61255 tccttctttactttcctcct 61236
>dbj|AP003477.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB2047A4 Length = 179110 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gaactcagagaagaggtcct 163 |||||||||||||||||||| Sbjct: 101430 gaactcagagaagaggtcct 101449
>dbj|AP005791.2| Homo sapiens genomic DNA, chromosome 8q22, clone: KB1357H4, complete sequence Length = 160208 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gaactcagagaagaggtcct 163 |||||||||||||||||||| Sbjct: 22553 gaactcagagaagaggtcct 22572
>ref|NM_203342.1| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) (EPB41), transcript variant 2, mRNA Length = 6369 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 657 caggaagaactcagagaaga 676
>ref|NM_203343.1| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) (EPB41), transcript variant 1, mRNA Length = 6064 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 577 caggaagaactcagagaaga 596
>ref|NM_004437.2| Homo sapiens erythrocyte membrane protein band 4.1 (elliptocytosis 1, RH-linked) (EPB41), transcript variant 3, mRNA Length = 6193 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 640 caggaagaactcagagaaga 659
>emb|BX284624.4| Mouse DNA sequence from clone RP23-299A2 on chromosome 2, complete sequence Length = 209836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 taatccatccatctacctac 189 |||||||||||||||||||| Sbjct: 18739 taatccatccatctacctac 18720
>dbj|AB209649.1| Homo sapiens mRNA for Protein 4.1 variant protein Length = 5770 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 585 caggaagaactcagagaaga 604
>dbj|AP006352.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT40O04, TM0348, complete sequence Length = 105070 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gagaagaggtccttacaagt 170 |||||||||||||||||||| Sbjct: 40566 gagaagaggtccttacaagt 40547
>gb|M61733.1|HUMEMP41 Homo sapiens erythroid membrane protein 4.1 mRNA, complete cds Length = 3043 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 663 caggaagaactcagagaaga 682
>gb|M14993.1|HUMELIA Human structural protein 4.1 mRNA, complete cds Length = 2867 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 646 caggaagaactcagagaaga 665
>gb|J03796.1|HUMELI Human erythroid isoform protein 4.1 mRNA, complete cds Length = 2677 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 caggaagaactcagagaaga 157 |||||||||||||||||||| Sbjct: 521 caggaagaactcagagaaga 540 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,692,271 Number of Sequences: 3902068 Number of extensions: 3692271 Number of successful extensions: 64856 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 64612 Number of HSP's gapped (non-prelim): 238 length of query: 518 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 495 effective length of database: 17,143,297,704 effective search space: 8485932363480 effective search space used: 8485932363480 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)