ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19h10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
2dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 180 4e-42
4gb|AY109589.1| Zea mays CL7475_1 mRNA sequence 101 3e-18
5ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchang... 48 0.034
6gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, co... 48 0.034
7ref|NM_190125.1| Oryza sativa (japonica cultivar-group), predic... 46 0.13
8gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, comp... 44 0.53
9gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete... 44 0.53
10gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, com... 44 0.53
11gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, comp... 44 0.53
12dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone... 44 0.53
13gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, c... 42 2.1
14gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, co... 42 2.1
15gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosom... 42 2.1
16gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome... 42 2.1
17emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on ch... 42 2.1
18gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, co... 42 2.1
19gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 42 2.1
20gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, compl... 42 2.1
21gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Ca... 42 2.1
22emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of... 42 2.1
23ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1... 42 2.1
24ref|NM_016173.3| Homo sapiens HemK methyltransferase family memb... 42 2.1
25gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137... 42 2.1
26gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complet... 42 2.1
27emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete s... 42 2.1
28gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, comple... 42 2.1
29gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA... 42 2.1
30emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on ch... 42 2.1
31emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (... 42 2.1
32emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-5... 42 2.1
33emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on ch... 42 2.1
34emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-2... 42 2.1
35dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Ca... 42 2.1
36ref|NM_186230.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.3
37gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, com... 40 8.3
38gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, co... 40 8.3
39ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein... 40 8.3
40gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, comple... 40 8.3
41gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 40 8.3
42gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete se... 40 8.3
43emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in... 40 8.3
44emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in ... 40 8.3
45dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, c... 40 8.3
46dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, c... 40 8.3
47gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 8.3
48gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Canc... 40 8.3
49ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.3
50ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.3
51ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LO... 40 8.3
52gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromo... 40 8.3
53dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
54gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, comple... 40 8.3
55gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Canc... 40 8.3
56gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complet... 40 8.3
57gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y... 40 8.3
58gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complet... 40 8.3
59gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y... 40 8.3
60dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.3
61dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clo... 40 8.3
62emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chro... 40 8.3
63emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15 40 8.3
64emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chro... 40 8.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                            
Query: 333      tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 392
                |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 38047170 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 38047229

                                                                            
Query: 393      cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 450
                |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 38047230 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 38047289

                                                              
Query: 451      cctgccatttgtaacacggtgatgggactccaaagaaggctttgga 496
                |||| ||||| |||||  ||||||| || |||||||||||||||||
Sbjct: 38047290 cctgtcatttctaacatagtgatggtaccccaaagaaggctttgga 38047335



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                            
Query: 1        attggacaaaactgacatgtagacaaccaattgagctagcatgccactccaaaatttcat 60
                ||||||||||| |||||| || |||||  || |||| || |||||||| ||||||||| |
Sbjct: 38046864 attggacaaaagtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgt 38046923

                                                                            
Query: 61       cagtggaattcatactgtatttagcttaggccaagtgcttctggctgaagcatgaggcat 120
                |||||||||  ||| |||||||||| ||||||| |||||||||| |||||||  |  |||
Sbjct: 38046924 cagtggaatctatattgtatttagcataggccatgtgcttctggatgaagcacaaaccat 38046983

                                     
Query: 121      ttagcagatgctaatattcta 141
                ||||||||  ||||| |||||
Sbjct: 38046984 ttagcagaccctaatcttcta 38047004



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                            
Query: 525      taaccccaatggacccaggcatat-ttttattgtcttgggtcacccactcatctagatgt 583
                |||||||||||||||||   |||| |||||||||||||||||  ||||||||||||||||
Sbjct: 38047368 taaccccaatggacccatagatatattttattgtcttgggtcggccactcatctagatgt 38047427

                                              
Query: 584      tcat--cttccccaatgtcattaccatggt 611
                 |||  |||||||||||||| |||||||||
Sbjct: 38047428 ccattgcttccccaatgtcactaccatggt 38047457
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A10
          Length = 137348

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                          
Query: 333    tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 392
              |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 128114 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 128173

                                                                          
Query: 393    cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 450
              |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 128174 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 128233

                                                            
Query: 451    cctgccatttgtaacacggtgatgggactccaaagaaggctttgga 496
              |||| ||||| |||||  ||||||| || |||||||||||||||||
Sbjct: 128234 cctgtcatttctaacatagtgatggtaccccaaagaaggctttgga 128279



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                          
Query: 1      attggacaaaactgacatgtagacaaccaattgagctagcatgccactccaaaatttcat 60
              ||||||||||| |||||| || |||||  || |||| || |||||||| ||||||||| |
Sbjct: 127808 attggacaaaagtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgt 127867

                                                                          
Query: 61     cagtggaattcatactgtatttagcttaggccaagtgcttctggctgaagcatgaggcat 120
              |||||||||  ||| |||||||||| ||||||| |||||||||| |||||||  |  |||
Sbjct: 127868 cagtggaatctatattgtatttagcataggccatgtgcttctggatgaagcacaaaccat 127927

                                   
Query: 121    ttagcagatgctaatattcta 141
              ||||||||  ||||| |||||
Sbjct: 127928 ttagcagaccctaatcttcta 127948



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                          
Query: 525    taaccccaatggacccaggcatat-ttttattgtcttgggtcacccactcatctagatgt 583
              |||||||||||||||||   |||| |||||||||||||||||  ||||||||||||||||
Sbjct: 128312 taaccccaatggacccatagatatattttattgtcttgggtcggccactcatctagatgt 128371

                                            
Query: 584    tcat--cttccccaatgtcattaccatggt 611
               |||  |||||||||||||| |||||||||
Sbjct: 128372 ccattgcttccccaatgtcactaccatggt 128401
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0471B04
          Length = 138025

 Score =  180 bits (91), Expect = 4e-42
 Identities = 148/166 (89%), Gaps = 2/166 (1%)
 Strand = Plus / Plus

                                                                         
Query: 333   tttatccttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcc 392
             |||||| | ||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 15204 tttatcttccagtttatagcttgcatctaggtggttaaggctctaaggagagcctgtgcc 15263

                                                                         
Query: 393   cctcatcagagacaggttc--aggagtgctaatgttagtttttggcacttggcactacct 450
             |||  ||||||||||||||  ||||||||||||||| ||||||||||||| |  ||||||
Sbjct: 15264 ccttgtcagagacaggttcagaggagtgctaatgtttgtttttggcacttagtgctacct 15323

                                                           
Query: 451   cctgccatttgtaacacggtgatgggactccaaagaaggctttgga 496
             |||| ||||| |||||  ||||||| || |||||||||||||||||
Sbjct: 15324 cctgtcatttctaacatagtgatggtaccccaaagaaggctttgga 15369



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Plus

                                                                         
Query: 1     attggacaaaactgacatgtagacaaccaattgagctagcatgccactccaaaatttcat 60
             ||||||||||| |||||| || |||||  || |||| || |||||||| ||||||||| |
Sbjct: 14898 attggacaaaagtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttcgt 14957

                                                                         
Query: 61    cagtggaattcatactgtatttagcttaggccaagtgcttctggctgaagcatgaggcat 120
             |||||||||  ||| |||||||||| ||||||| |||||||||| |||||||  |  |||
Sbjct: 14958 cagtggaatctatattgtatttagcataggccatgtgcttctggatgaagcacaaaccat 15017

                                  
Query: 121   ttagcagatgctaatattcta 141
             ||||||||  ||||| |||||
Sbjct: 15018 ttagcagaccctaatcttcta 15038



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 80/90 (88%), Gaps = 3/90 (3%)
 Strand = Plus / Plus

                                                                         
Query: 525   taaccccaatggacccaggcatat-ttttattgtcttgggtcacccactcatctagatgt 583
             |||||||||||||||||   |||| |||||||||||||||||  ||||||||||||||||
Sbjct: 15402 taaccccaatggacccatagatatattttattgtcttgggtcggccactcatctagatgt 15461

                                           
Query: 584   tcat--cttccccaatgtcattaccatggt 611
              |||  |||||||||||||| |||||||||
Sbjct: 15462 ccattgcttccccaatgtcactaccatggt 15491
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>gb|AY109589.1| Zea mays CL7475_1 mRNA sequence
          Length = 1284

 Score =  101 bits (51), Expect = 3e-18
 Identities = 100/117 (85%), Gaps = 2/117 (1%)
 Strand = Plus / Minus

                                                                       
Query: 340 ttcagtttatagcttgcatctaggtggctcaggctctaaggagagcctgtgcccctcatc 399
           ||||||| |||||||||||||||||||   |||||||||||||||||||||||||| |||
Sbjct: 557 ttcagttgatagcttgcatctaggtggtcaaggctctaaggagagcctgtgcccctaatc 498

                                                                    
Query: 400 agagacaggttc--aggagtgctaatgttagtttttggcacttggcactacctcctg 454
           ||| ||||||||  || |||||||||||| |      || |||||||||||||||||
Sbjct: 497 agacacaggttcagagtagtgctaatgtttgnnnnnagcccttggcactacctcctg 441
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>ref|XM_415002.1| PREDICTED: Gallus gallus sodium-calcium exchanger (NCX1), mRNA
          Length = 5274

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 91   ccaagtgcttctggctgaagcatg 114
            ||||||||||||||||||||||||
Sbjct: 2933 ccaagtgcttctggctgaagcatg 2956
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>gb|AC003982.1|AC003982 Homo sapiens PAC clone 166H1 from 12q, complete sequence
          Length = 122302

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 207   catactcacacacacgcctccccaccac 234
             |||||| |||||||||||||||||||||
Sbjct: 79234 catactaacacacacgcctccccaccac 79207



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 207   catactcacacacacgcctccccaccac 234
             |||||| |||||||||||||||||||||
Sbjct: 79140 catactaacacacacgcctccccaccac 79113
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>ref|NM_190125.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 930

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 1   attggacaaaactgacatgtagacaaccaattgagctagcatgccactccaaaatttca 59
           ||||||||||| |||||| || |||||  || |||| || |||||||| ||||||||||
Sbjct: 860 attggacaaaagtgacatctaaacaactgatcgagcaagaatgccacttcaaaatttca 918
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>gb|AC138394.7| Mus musculus chromosome 3, clone RP23-333D8, complete sequence
          Length = 227600

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                   
Query: 213   cacacacacgcctccccaccaccaccagcaacttcaca 250
             |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 42372 cacacacaagcctccccacc-ccagcagcaacttcaca 42336
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>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence
          Length = 191191

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 228   ccaccaccaccagcaacttcac 249
             ||||||||||||||||||||||
Sbjct: 75327 ccaccaccaccagcaacttcac 75306
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>gb|AC158935.4| Mus musculus chromosome 3, clone RP24-180K20, complete sequence
          Length = 157284

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 35/38 (92%), Gaps = 1/38 (2%)
 Strand = Plus / Minus

                                                    
Query: 213    cacacacacgcctccccaccaccaccagcaacttcaca 250
              |||||||| ||||||||||| ||| |||||||||||||
Sbjct: 138671 cacacacaagcctccccacc-ccagcagcaacttcaca 138635
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>gb|AC103726.5| Homo sapiens chromosome 8, clone RP11-737F9, complete sequence
          Length = 143480

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 587   tcttccccaatgtcattaccat 608
             ||||||||||||||||||||||
Sbjct: 55942 tcttccccaatgtcattaccat 55963
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>dbj|AP005887.2| Homo sapiens genomic DNA, chromosome 8q24, clone: KB1252A6, complete
             sequence
          Length = 149431

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 587   tcttccccaatgtcattaccat 608
             ||||||||||||||||||||||
Sbjct: 30860 tcttccccaatgtcattaccat 30839
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>gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, complete sequence
          Length = 182311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 21    agacaaccaattgagctagcatgcc 45
             |||||||||| ||||||||||||||
Sbjct: 20374 agacaaccaaatgagctagcatgcc 20398
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>gb|AC110217.10| Mus musculus chromosome 1, clone RP24-510P18, complete sequence
          Length = 132882

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 57    tcatcagtggaattcatactg 77
             |||||||||||||||||||||
Sbjct: 46356 tcatcagtggaattcatactg 46336
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>gb|AC123800.4| Mus musculus BAC clone RP24-343K18 from chromosome 1, complete sequence
          Length = 177367

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 57     tcatcagtggaattcatactg 77
              |||||||||||||||||||||
Sbjct: 175896 tcatcagtggaattcatactg 175876
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>gb|AC125172.4| Mus musculus BAC clone RP24-492I4 from chromosome 14, complete sequence
          Length = 179789

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 93    aagtgcttctggctgaagcatgagg 117
             |||||||||||||| ||||||||||
Sbjct: 90853 aagtgcttctggctcaagcatgagg 90877
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>emb|AL390777.13| Human DNA sequence from clone RP11-301F14 on chromosome 9 Contains the
             5' end of the NTRK2 gene for Neurotrophic tyrosine kinase,
             receptor, type 2 (TRKB) and a CpG island, complete
             sequence
          Length = 182914

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 410   tcaggagtgctaatgttagtt 430
             |||||||||||||||||||||
Sbjct: 97510 tcaggagtgctaatgttagtt 97530
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>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence
          Length = 146338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 21    agacaaccaattgagctagcatgcc 45
             |||||||||| ||||||||||||||
Sbjct: 80853 agacaaccaaatgagctagcatgcc 80877
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    caccaccagcaacttcacaac 252
              |||||||||||||||||||||
Sbjct: 106641 caccaccagcaacttcacaac 106661
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>gb|AC096920.2| Homo sapiens chromosome 3 clone RP11-804H8, complete sequence
          Length = 192324

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 222    gcctccccaccaccaccagca 242
              |||||||||||||||||||||
Sbjct: 130584 gcctccccaccaccaccagca 130564
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>gb|AC092827.8| Homo sapiens 12p BAC RP11-186N14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117636

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 176   cagctgaccagtctataactt 196
             |||||||||||||||||||||
Sbjct: 57447 cagctgaccagtctataactt 57427
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>emb|CR383656.1| Human chromosome 14 DNA sequence BAC R-536C10 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 184906

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   caccaccagcaacttcacaac 252
             |||||||||||||||||||||
Sbjct: 86724 caccaccagcaacttcacaac 86744
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>ref|NG_002375.1| Homo sapiens oligophrenin 1 pseudogene 1 (OPHN1P1) on chromosome 22
          Length = 20254

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   caccaccagcaacttcacaac 252
             |||||||||||||||||||||
Sbjct: 12430 caccaccagcaacttcacaac 12410
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>ref|NM_016173.3| Homo sapiens HemK methyltransferase family member 1 (HEMK1), mRNA
          Length = 5862

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 222  gcctccccaccaccaccagca 242
            |||||||||||||||||||||
Sbjct: 3833 gcctccccaccaccaccagca 3853
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>gb|AC022083.6|AC022083 Homo sapiens chromosome 15 clone CTD-2137J4 map 15q21.3, complete
             sequence
          Length = 114149

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 223   cctccccaccaccaccagcaa 243
             |||||||||||||||||||||
Sbjct: 72318 cctccccaccaccaccagcaa 72338
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>gb|AC073065.6| Homo sapiens BAC clone RP11-149O3 from 2, complete sequence
          Length = 175345

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    ttatctagagcaaataaaatt 172
              |||||||||||||||||||||
Sbjct: 128068 ttatctagagcaaataaaatt 128048
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>emb|BX088590.7| Pig DNA sequence from clone XX-591C4, complete sequence
          Length = 165790

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 161  gcaaataaaatttgacagctg 181
            |||||||||||||||||||||
Sbjct: 2994 gcaaataaaatttgacagctg 2974
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>gb|AC114924.5| Mus musculus BAC clone RP23-424D3 from 18, complete sequence
          Length = 198440

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 228   ccaccaccaccagcaacttcacaac 252
             |||||||||||| ||||||||||||
Sbjct: 81969 ccaccaccaccaccaacttcacaac 81945
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>gb|AF172244.1|AF172244 Homo sapiens HEMK homolog 7kb (HEMK) mRNA, complete cds
          Length = 5737

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 222  gcctccccaccaccaccagca 242
            |||||||||||||||||||||
Sbjct: 3758 gcctccccaccaccaccagca 3778
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>emb|CT025626.11| Mouse DNA sequence from clone RP24-141G14 on chromosome 14, complete
              sequence
          Length = 201441

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 93     aagtgcttctggctgaagcatgagg 117
              |||||||||||||| ||||||||||
Sbjct: 116931 aagtgcttctggctcaagcatgagg 116907
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>emb|BX537562.1|HSM806176 Homo sapiens mRNA; cDNA DKFZp686I1369 (from clone DKFZp686I1369)
          Length = 5778

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 222  gcctccccaccaccaccagca 242
            |||||||||||||||||||||
Sbjct: 3971 gcctccccaccaccaccagca 3991
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>emb|AL512310.4|CNS07EF1 Human chromosome 14 DNA sequence BAC R-597A11 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185605

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   caccaccagcaacttcacaac 252
             |||||||||||||||||||||
Sbjct: 96743 caccaccagcaacttcacaac 96763
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>emb|Z74023.1|HSLUCA3 Human DNA sequence from clone XXcos-3 on chromosome 3, complete
            sequence
          Length = 25067

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 222  gcctccccaccaccaccagca 242
            |||||||||||||||||||||
Sbjct: 5316 gcctccccaccaccaccagca 5296
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>emb|AL929600.3|CNS08CCF Human chromosome 14 DNA sequence BAC R-254P21 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148065

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   caccaccagcaacttcacaac 252
             |||||||||||||||||||||
Sbjct: 81511 caccaccagcaacttcacaac 81491
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>dbj|AP000534.1| Homo sapiens genomic DNA, chromosome 22q11.2, Cat Eye Syndrome region,
             clone:c23H5
          Length = 37769

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   caccaccagcaacttcacaac 252
             |||||||||||||||||||||
Sbjct: 20211 caccaccagcaacttcacaac 20191
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>ref|NM_186230.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3330

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  caacttcacaacaacatcct 260
            ||||||||||||||||||||
Sbjct: 3276 caacttcacaacaacatcct 3257
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>gb|AC147004.2| Homo sapiens chromosome 8, clone RP13-895A16, complete sequence
          Length = 109297

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 215   cacacacgcctccccaccac 234
             ||||||||||||||||||||
Sbjct: 69316 cacacacgcctccccaccac 69297
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>gb|AC146193.3| Pan troglodytes BAC clone CH251-483N24 from Y, complete sequence
          Length = 232304

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tctagagcaaataaaatttg 174
             ||||||||||||||||||||
Sbjct: 46507 tctagagcaaataaaatttg 46526
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>ref|XM_817863.1| Trypanosoma brucei TREU927 hypothetical protein (Tb10.6k15.3480)
           partial mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 198 atttccacgcatactcacacacac 221
           |||||||||||||| |||||||||
Sbjct: 130 atttccacgcatacacacacacac 107
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>gb|AC107389.4| Homo sapiens BAC clone RP11-509N15 from 4, complete sequence
          Length = 104859

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 540   caggcatatttttattgtcttggg 563
             |||| |||||||||||||||||||
Sbjct: 50059 caggtatatttttattgtcttggg 50036
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>gb|AC083948.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-67P7, complete
              sequence
          Length = 214125

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    agtctataacttcatttcca 204
              ||||||||||||||||||||
Sbjct: 126467 agtctataacttcatttcca 126448
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>gb|AC122728.32| Medicago truncatula clone mth2-22l4, complete sequence
          Length = 102937

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   cctccccaccaccaccagca 242
             ||||||||||||||||||||
Sbjct: 13173 cctccccaccaccaccagca 13192
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>emb|BX908795.10| Zebrafish DNA sequence from clone DKEY-92J12 in linkage group 1, complete
              sequence
          Length = 142468

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     catactgtatttagcttagg 90
              ||||||||||||||||||||
Sbjct: 128956 catactgtatttagcttagg 128975
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>emb|BX537120.8| Zebrafish DNA sequence from clone DKEY-13P21 in linkage group 21,
             complete sequence
          Length = 242772

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 383   agcctgtgcccctcatcaga 402
             ||||||||||||||||||||
Sbjct: 54494 agcctgtgcccctcatcaga 54513
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>dbj|BS000611.1| Pan troglodytes chromosome Y clone:PTB-386A09, complete sequences
          Length = 171989

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tctagagcaaataaaatttg 174
              ||||||||||||||||||||
Sbjct: 142199 tctagagcaaataaaatttg 142180
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>dbj|BS000596.1| Pan troglodytes chromosome Y clone:PTB-130H13, complete sequences
          Length = 182507

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   tctagagcaaataaaatttg 174
             ||||||||||||||||||||
Sbjct: 42114 tctagagcaaataaaatttg 42095
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      tctagagcaaataaaatttg 174
                ||||||||||||||||||||
Sbjct: 22698163 tctagagcaaataaaatttg 22698182
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>gb|AC160397.9| Mus musculus 6 BAC RP23-279I21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 173003

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 252    caacatcctgtgataacttc 271
              ||||||||||||||||||||
Sbjct: 111331 caacatcctgtgataacttc 111350
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>ref|XM_496597.2| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 1 (LOC440910), mRNA
          Length = 4157

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  accaccagcaacttcacaac 252
            ||||||||||||||||||||
Sbjct: 2537 accaccagcaacttcacaac 2556
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>ref|XM_933134.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
           variant 3 (LOC440910), mRNA
          Length = 439

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 233 accaccagcaacttcacaac 252
           ||||||||||||||||||||
Sbjct: 137 accaccagcaacttcacaac 156
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>ref|XM_928770.1| PREDICTED: Homo sapiens hypothetical protein LOC440910, transcript
            variant 2 (LOC440910), mRNA
          Length = 4499

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 233  accaccagcaacttcacaac 252
            ||||||||||||||||||||
Sbjct: 2879 accaccagcaacttcacaac 2898
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>gb|AC151479.4| Pan troglodytes BAC clone CH251-656P8 from chromosome y, complete
              sequence
          Length = 179557

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 155    tctagagcaaataaaatttg 174
              ||||||||||||||||||||
Sbjct: 112230 tctagagcaaataaaatttg 112249
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 241     caacttcacaacaacatcct 260
               ||||||||||||||||||||
Sbjct: 1718706 caacttcacaacaacatcct 1718687
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>gb|AC064871.6| Homo sapiens BAC clone RP11-598C21 from 2, complete sequence
          Length = 194197

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   ctgaagcatgaggcatttag 124
             ||||||||||||||||||||
Sbjct: 64207 ctgaagcatgaggcatttag 64226
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>gb|AC153602.6| Mus musculus 6 BAC RP23-374K11 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 194925

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   caacatcctgtgataacttc 271
             ||||||||||||||||||||
Sbjct: 36279 caacatcctgtgataacttc 36298
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>gb|AC131180.3| Homo sapiens BAC clone RP11-316I2 from 2, complete sequence
          Length = 132753

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    accaccagcaacttcacaac 252
              ||||||||||||||||||||
Sbjct: 113988 accaccagcaacttcacaac 114007
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>gb|AC007284.4|AC007284 Homo sapiens BAC clone RP11-558K21 from Y, complete sequence
          Length = 171449

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tctagagcaaataaaatttg 174
              ||||||||||||||||||||
Sbjct: 108163 tctagagcaaataaaatttg 108144
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>gb|AC023271.11| Homo sapiens BAC clone RP11-96E8 from 2, complete sequence
          Length = 106499

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gcatttagcagatgctaata 136
             ||||||||||||||||||||
Sbjct: 52465 gcatttagcagatgctaata 52446
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>gb|AC007685.2|AC007685 Homo sapiens BAC clone RP11-558O12 from Y, complete sequence
          Length = 178377

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tctagagcaaataaaatttg 174
              ||||||||||||||||||||
Sbjct: 141917 tctagagcaaataaaatttg 141898
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   caacttcacaacaacatcct 260
             ||||||||||||||||||||
Sbjct: 60906 caacttcacaacaacatcct 60887
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>dbj|AP006749.3| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1528A10, complete
             sequence
          Length = 34971

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   cacacacgcctccccaccac 234
             ||||||||||||||||||||
Sbjct: 20371 cacacacgcctccccaccac 20390
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>emb|BX544880.3| Mouse DNA sequence from clone RP23-119F1 on chromosome X, complete
              sequence
          Length = 208959

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 497    gataccaaaacactgctgtg 516
              ||||||||||||||||||||
Sbjct: 167977 gataccaaaacactgctgtg 167958
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>emb|CR855831.2| Xenopus tropicalis finished cDNA, clone TTpA003p15
          Length = 2414

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aacagttctttatccttcag 344
            ||||||||||||||||||||
Sbjct: 2207 aacagttctttatccttcag 2226
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>emb|AL844609.6| Mouse DNA sequence from clone RP23-356F8 on chromosome 4, complete
              sequence
          Length = 191676

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    cacacacacgcctccccacc 232
              ||||||||||||||||||||
Sbjct: 104317 cacacacacgcctccccacc 104336


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,019,438
Number of Sequences: 3902068
Number of extensions: 7019438
Number of successful extensions: 152855
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 152579
Number of HSP's gapped (non-prelim): 269
length of query: 611
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 588
effective length of database: 17,143,297,704
effective search space: 10080259049952
effective search space used: 10080259049952
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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