ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19h08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_194125.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1905 Score = 252 bits (127), Expect = 9e-64 Identities = 363/442 (82%) Strand = Plus / Plus Query: 19 ggtcgtgcggggctcatagaagaagcattccatcttgtgcagagcttgacaataacacct 78 |||||||| ||||||||||||||||||||||| ||||| |||||| |||| || | ||| Sbjct: 1228 ggtcgtgccgggctcatagaagaagcattccaccttgtccagagcatgacgatcgcccct 1287 Query: 79 gacgctgtcatgtgggtgtcactgcttgctgcatgccggcttcacaagaacatggcgtta 138 ||| | |||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 1288 gacaccgtcatgtgggtgtcactgctcgccgcgtgccggcttcacaagaacatggcgtta 1347 Query: 139 ggccagcggattgcagacttccttgttgccaatgggttagccaactcagggatgtatatc 198 ||||||| ||| || |||| || || ||| ||| | |||||||| || ||||| ||| Sbjct: 1348 ggccagcagatcgccgactatctcgtcgccggtggacttgccaactccggtatgtacatc 1407 Query: 199 ctcctttccaacatctatgcngctgtcggtaaatgggaagaagtggcgcgggtgcgctcg 258 ||||| || |||||||| || ||||| ||||| ||||||||||| || | || | || Sbjct: 1408 ctcctgtcgaacatctacgcggctgttggtaactgggaagaagttgcaagagtaaggtcc 1467 Query: 259 atgatgaaggctagtggcatccagaaagagcctgggtgtagtgctattgagatagaccgc 318 ||||||||||| |||||||||||||| ||||| ||||| || || || ||| | | |||| Sbjct: 1468 atgatgaaggccagtggcatccagaaggagcccgggtgcagcgccatcgaggtcggccgc 1527 Query: 319 aaggtatatgagttcgttgcgggggatatgagccacccctgcaccgacgaaatatatgcc 378 ||||| || |||||||| || || || |||||||| || |||| || || ||||| ||| Sbjct: 1528 aaggtctacgagttcgtcgccggcgacatgagccatcctcgcacagatgagatatacgcc 1587 Query: 379 atgttagacaagatgaatggccttgtgaaggagcatggacatgttccgcagacagagctg 438 ||| | || |||||||| || ||||||| ||||| ||||||||||| ||||| |||||| Sbjct: 1588 atgctggagaagatgaacgggattgtgaaagagcagggacatgttccacagaccgagctg 1647 Query: 439 gttctgcatgacctggacgagg 460 || || ||||| ||||| |||| Sbjct: 1648 gtgctacatgatctggatgagg 1669
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 252 bits (127), Expect = 9e-64 Identities = 363/442 (82%) Strand = Plus / Plus Query: 19 ggtcgtgcggggctcatagaagaagcattccatcttgtgcagagcttgacaataacacct 78 |||||||| ||||||||||||||||||||||| ||||| |||||| |||| || | ||| Sbjct: 743158 ggtcgtgccgggctcatagaagaagcattccaccttgtccagagcatgacgatcgcccct 743217 Query: 79 gacgctgtcatgtgggtgtcactgcttgctgcatgccggcttcacaagaacatggcgtta 138 ||| | |||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 743218 gacaccgtcatgtgggtgtcactgctcgccgcgtgccggcttcacaagaacatggcgtta 743277 Query: 139 ggccagcggattgcagacttccttgttgccaatgggttagccaactcagggatgtatatc 198 ||||||| ||| || |||| || || ||| ||| | |||||||| || ||||| ||| Sbjct: 743278 ggccagcagatcgccgactatctcgtcgccggtggacttgccaactccggtatgtacatc 743337 Query: 199 ctcctttccaacatctatgcngctgtcggtaaatgggaagaagtggcgcgggtgcgctcg 258 ||||| || |||||||| || ||||| ||||| ||||||||||| || | || | || Sbjct: 743338 ctcctgtcgaacatctacgcggctgttggtaactgggaagaagttgcaagagtaaggtcc 743397 Query: 259 atgatgaaggctagtggcatccagaaagagcctgggtgtagtgctattgagatagaccgc 318 ||||||||||| |||||||||||||| ||||| ||||| || || || ||| | | |||| Sbjct: 743398 atgatgaaggccagtggcatccagaaggagcccgggtgcagcgccatcgaggtcggccgc 743457 Query: 319 aaggtatatgagttcgttgcgggggatatgagccacccctgcaccgacgaaatatatgcc 378 ||||| || |||||||| || || || |||||||| || |||| || || ||||| ||| Sbjct: 743458 aaggtctacgagttcgtcgccggcgacatgagccatcctcgcacagatgagatatacgcc 743517 Query: 379 atgttagacaagatgaatggccttgtgaaggagcatggacatgttccgcagacagagctg 438 ||| | || |||||||| || ||||||| ||||| ||||||||||| ||||| |||||| Sbjct: 743518 atgctggagaagatgaacgggattgtgaaagagcagggacatgttccacagaccgagctg 743577 Query: 439 gttctgcatgacctggacgagg 460 || || ||||| ||||| |||| Sbjct: 743578 gtgctacatgatctggatgagg 743599
>dbj|AP003874.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1118_G09 Length = 115815 Score = 252 bits (127), Expect = 9e-64 Identities = 363/442 (82%) Strand = Plus / Plus Query: 19 ggtcgtgcggggctcatagaagaagcattccatcttgtgcagagcttgacaataacacct 78 |||||||| ||||||||||||||||||||||| ||||| |||||| |||| || | ||| Sbjct: 81689 ggtcgtgccgggctcatagaagaagcattccaccttgtccagagcatgacgatcgcccct 81748 Query: 79 gacgctgtcatgtgggtgtcactgcttgctgcatgccggcttcacaagaacatggcgtta 138 ||| | |||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 81749 gacaccgtcatgtgggtgtcactgctcgccgcgtgccggcttcacaagaacatggcgtta 81808 Query: 139 ggccagcggattgcagacttccttgttgccaatgggttagccaactcagggatgtatatc 198 ||||||| ||| || |||| || || ||| ||| | |||||||| || ||||| ||| Sbjct: 81809 ggccagcagatcgccgactatctcgtcgccggtggacttgccaactccggtatgtacatc 81868 Query: 199 ctcctttccaacatctatgcngctgtcggtaaatgggaagaagtggcgcgggtgcgctcg 258 ||||| || |||||||| || ||||| ||||| ||||||||||| || | || | || Sbjct: 81869 ctcctgtcgaacatctacgcggctgttggtaactgggaagaagttgcaagagtaaggtcc 81928 Query: 259 atgatgaaggctagtggcatccagaaagagcctgggtgtagtgctattgagatagaccgc 318 ||||||||||| |||||||||||||| ||||| ||||| || || || ||| | | |||| Sbjct: 81929 atgatgaaggccagtggcatccagaaggagcccgggtgcagcgccatcgaggtcggccgc 81988 Query: 319 aaggtatatgagttcgttgcgggggatatgagccacccctgcaccgacgaaatatatgcc 378 ||||| || |||||||| || || || |||||||| || |||| || || ||||| ||| Sbjct: 81989 aaggtctacgagttcgtcgccggcgacatgagccatcctcgcacagatgagatatacgcc 82048 Query: 379 atgttagacaagatgaatggccttgtgaaggagcatggacatgttccgcagacagagctg 438 ||| | || |||||||| || ||||||| ||||| ||||||||||| ||||| |||||| Sbjct: 82049 atgctggagaagatgaacgggattgtgaaagagcagggacatgttccacagaccgagctg 82108 Query: 439 gttctgcatgacctggacgagg 460 || || ||||| ||||| |||| Sbjct: 82109 gtgctacatgatctggatgagg 82130
>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1513_F02 Length = 126845 Score = 252 bits (127), Expect = 9e-64 Identities = 363/442 (82%) Strand = Plus / Plus Query: 19 ggtcgtgcggggctcatagaagaagcattccatcttgtgcagagcttgacaataacacct 78 |||||||| ||||||||||||||||||||||| ||||| |||||| |||| || | ||| Sbjct: 62965 ggtcgtgccgggctcatagaagaagcattccaccttgtccagagcatgacgatcgcccct 63024 Query: 79 gacgctgtcatgtgggtgtcactgcttgctgcatgccggcttcacaagaacatggcgtta 138 ||| | |||||||||||||||||||| || || ||||||||||||||||||||||||||| Sbjct: 63025 gacaccgtcatgtgggtgtcactgctcgccgcgtgccggcttcacaagaacatggcgtta 63084 Query: 139 ggccagcggattgcagacttccttgttgccaatgggttagccaactcagggatgtatatc 198 ||||||| ||| || |||| || || ||| ||| | |||||||| || ||||| ||| Sbjct: 63085 ggccagcagatcgccgactatctcgtcgccggtggacttgccaactccggtatgtacatc 63144 Query: 199 ctcctttccaacatctatgcngctgtcggtaaatgggaagaagtggcgcgggtgcgctcg 258 ||||| || |||||||| || ||||| ||||| ||||||||||| || | || | || Sbjct: 63145 ctcctgtcgaacatctacgcggctgttggtaactgggaagaagttgcaagagtaaggtcc 63204 Query: 259 atgatgaaggctagtggcatccagaaagagcctgggtgtagtgctattgagatagaccgc 318 ||||||||||| |||||||||||||| ||||| ||||| || || || ||| | | |||| Sbjct: 63205 atgatgaaggccagtggcatccagaaggagcccgggtgcagcgccatcgaggtcggccgc 63264 Query: 319 aaggtatatgagttcgttgcgggggatatgagccacccctgcaccgacgaaatatatgcc 378 ||||| || |||||||| || || || |||||||| || |||| || || ||||| ||| Sbjct: 63265 aaggtctacgagttcgtcgccggcgacatgagccatcctcgcacagatgagatatacgcc 63324 Query: 379 atgttagacaagatgaatggccttgtgaaggagcatggacatgttccgcagacagagctg 438 ||| | || |||||||| || ||||||| ||||| ||||||||||| ||||| |||||| Sbjct: 63325 atgctggagaagatgaacgggattgtgaaagagcagggacatgttccacagaccgagctg 63384 Query: 439 gttctgcatgacctggacgagg 460 || || ||||| ||||| |||| Sbjct: 63385 gtgctacatgatctggatgagg 63406
>emb|BX640577.17| Zebrafish DNA sequence from clone DKEY-117O14 in linkage group 14, complete sequence Length = 214178 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 59 agagcttgacaataacacctgac 81 ||||||||||||||||||||||| Sbjct: 198880 agagcttgacaataacacctgac 198858
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 tgatgaaggctagtggcatcca 281 |||||||||||||||||||||| Sbjct: 17334691 tgatgaaggctagtggcatcca 17334670
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 260 tgatgaaggctagtggcatcca 281 |||||||||||||||||||||| Sbjct: 100952 tgatgaaggctagtggcatcca 100931
>emb|CR846102.12| Zebrafish DNA sequence from clone DKEY-50I13 in linkage group 14, complete sequence Length = 174004 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 agagcttgacaataacacctg 79 ||||||||||||||||||||| Sbjct: 107490 agagcttgacaataacacctg 107510
>gb|AC154908.4| Mus musculus BAC clone RP23-315C11 from chromosome 12, complete sequence Length = 169650 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aggctagtggcatccagaaa 285 |||||||||||||||||||| Sbjct: 101275 aggctagtggcatccagaaa 101256
>gb|AC010993.13| Drosophila melanogaster clone BACR27O05, complete sequence Length = 193526 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 cctgcaccgacgaaatatat 375 |||||||||||||||||||| Sbjct: 192112 cctgcaccgacgaaatatat 192131
>gb|AF525524.1| Uncultured euryarchaeote clone junemcr11 methyl-coenzyme M reductase subunit A (mcrA) gene, partial sequence Length = 764 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 ccttgtgaaggagcatggacatgt 422 ||||||| |||||||||||||||| Sbjct: 629 ccttgtggaggagcatggacatgt 606
>gb|AF525522.1| Uncultured euryarchaeote clone novmcr55 methyl-coenzyme M reductase subunit A (mcrA) gene, partial cds Length = 763 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 ccttgtgaaggagcatggacatgt 422 ||||||| |||||||||||||||| Sbjct: 628 ccttgtggaggagcatggacatgt 605
>gb|AF525517.1| Uncultured euryarchaeote clone novmcr11 methyl-coenzyme M reductase subunit A (mcrA) gene, partial cds Length = 763 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 ccttgtgaaggagcatggacatgt 422 ||||||| |||||||||||||||| Sbjct: 628 ccttgtgcaggagcatggacatgt 605
>gb|AF525516.1| Uncultured euryarchaeote clone novmcr4 methyl-coenzyme M reductase subunit A (mcrA) gene, partial cds Length = 763 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 399 ccttgtgaaggagcatggacatgt 422 ||||||| |||||||||||||||| Sbjct: 628 ccttgtgcaggagcatggacatgt 605
>gb|AC022028.7| Homo sapiens chromosome 10 clone RP11-93H12, complete sequence Length = 156320 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 agacaagatgaatggccttg 403 |||||||||||||||||||| Sbjct: 31786 agacaagatgaatggccttg 31805
>gb|AC010843.10|AC010843 Drosophila melanogaster, chromosome X, region 12A-12A, BAC clone BACR08A22, complete sequence Length = 170914 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 cctgcaccgacgaaatatat 375 |||||||||||||||||||| Sbjct: 41993 cctgcaccgacgaaatatat 42012
>gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complete sequence Length = 180970 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 aagagcctgggtgtagtgct 303 |||||||||||||||||||| Sbjct: 60333 aagagcctgggtgtagtgct 60352
>gb|AE003492.3| Drosophila melanogaster chromosome X, section 44 of 74 of the complete sequence Length = 296756 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 cctgcaccgacgaaatatat 375 |||||||||||||||||||| Sbjct: 193734 cctgcaccgacgaaatatat 193753
>gb|AC154594.2| Mus musculus BAC clone RP23-350L7 from chromosome 14, complete sequence Length = 195046 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 388 aagatgaatggccttgtgaa 407 |||||||||||||||||||| Sbjct: 32603 aagatgaatggccttgtgaa 32584
>gb|AC161463.3| Gallus gallus BAC clone CH261-127J9 from chromosome ul, complete sequence Length = 213261 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 tcctcctttccaacatctat 216 |||||||||||||||||||| Sbjct: 108083 tcctcctttccaacatctat 108064
>dbj|AP006119.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT45C16, TM0203, complete sequence Length = 110764 Score = 40.1 bits (20), Expect = 6.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 201 cctttccaacatctatgcngctg 223 |||||||||||||||||| |||| Sbjct: 60411 cctttccaacatctatgctgctg 60389 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,168,321 Number of Sequences: 3902068 Number of extensions: 3168321 Number of successful extensions: 57284 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57201 Number of HSP's gapped (non-prelim): 83 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
