ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19g15 |
|---|---|
| Clone Library Name | barley_pub |
>RS26_ORYSA (P49216) 40S ribosomal protein S26 (S31)| Length = 133 Score = 87.0 bits (214), Expect = 3e-17 Identities = 38/41 (92%), Positives = 39/41 (95%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVEQ A+RDVQE CVHDGYVLPKLYAKVHHCVSCAIHAHI Sbjct: 43 NIVEQVAIRDVQEGCVHDGYVLPKLYAKVHHCVSCAIHAHI 83
>RS26_ARATH (P49206) 40S ribosomal protein S26| Length = 131 Score = 72.4 bits (176), Expect = 6e-13 Identities = 31/41 (75%), Positives = 37/41 (90%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVEQAA+RDVQEA V++GY LPKLYAK +CVSCAIH+H+ Sbjct: 43 NIVEQAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHV 83
>RS26_DROME (P13008) 40S ribosomal protein S26 (DS31)| Length = 114 Score = 66.6 bits (161), Expect = 4e-11 Identities = 29/41 (70%), Positives = 35/41 (85%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA + D YVLPKLYAK+H+CVSCAIH+ + Sbjct: 43 NIVEAAAVRDITEASIWDSYVLPKLYAKLHYCVSCAIHSKV 83
>RS26_RAT (P62856) 40S ribosomal protein S26| Length = 114 Score = 66.2 bits (160), Expect = 5e-11 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26_MOUSE (P62855) 40S ribosomal protein S26| Length = 114 Score = 66.2 bits (160), Expect = 5e-11 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26_MACFA (P61251) 40S ribosomal protein S26| Length = 114 Score = 66.2 bits (160), Expect = 5e-11 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26_HUMAN (P62854) 40S ribosomal protein S26| Length = 114 Score = 66.2 bits (160), Expect = 5e-11 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26_SHEEP (Q6Q312) 40S ribosomal protein S26| Length = 114 Score = 65.5 bits (158), Expect = 8e-11 Identities = 29/41 (70%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26_ANOGA (Q9GT45) 40S ribosomal protein S26| Length = 114 Score = 65.5 bits (158), Expect = 8e-11 Identities = 28/41 (68%), Positives = 35/41 (85%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ +A V+ YVLPKLYAK+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISDASVYSSYVLPKLYAKLHYCVSCAIHSKV 82
>RS26_CRICR (P30742) 40S ribosomal protein S26| Length = 114 Score = 64.7 bits (156), Expect = 1e-10 Identities = 28/41 (68%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V D YVLPKLY ++H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHSKV 82
>RS26_PIG (P49171) 40S ribosomal protein S26| Length = 114 Score = 63.5 bits (153), Expect = 3e-10 Identities = 28/41 (68%), Positives = 33/41 (80%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVR + EA V D YVLPKLY K+H+CVSCAIH+ + Sbjct: 42 NIVEAAAVRXISEASVFDAYVLPKLYVKLHYCVSCAIHSKV 82
>RS26B_YEAST (P39939) 40S ribosomal protein S26-B| Length = 119 Score = 60.8 bits (146), Expect = 2e-09 Identities = 28/41 (68%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V+ Y LPK Y K+H+CVSCAIHA I Sbjct: 43 NIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARI 83
>RS26A_YEAST (P39938) 40S ribosomal protein S26-A| Length = 119 Score = 60.8 bits (146), Expect = 2e-09 Identities = 28/41 (68%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ EA V+ Y LPK Y K+H+CVSCAIHA I Sbjct: 43 NIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHARI 83
>RS26_OCTVU (P27085) 40S ribosomal protein S26| Length = 127 Score = 59.7 bits (143), Expect = 4e-09 Identities = 27/41 (65%), Positives = 34/41 (82%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ +A V++ Y LPKLYAK+ +CVSCAIH+ I Sbjct: 43 NIVEAAAVRDISDASVYEVYALPKLYAKLLYCVSCAIHSKI 83
>RS26_BRUPA (P41959) 40S ribosomal protein S26 (Fragment)| Length = 83 Score = 59.7 bits (143), Expect = 4e-09 Identities = 25/41 (60%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIV AAVRD+ +A +D Y LPKLY K+H+CVSCAIH+ + Sbjct: 43 NIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHSKV 83
>RS26_SCHCO (O93931) 40S ribosomal protein S26| Length = 126 Score = 59.3 bits (142), Expect = 6e-09 Identities = 23/41 (56%), Positives = 33/41 (80%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 N+VE AA+RD+ +A V+ Y +PKLY K+ +CVSCAIH+H+ Sbjct: 43 NMVESAAIRDISDASVYPEYAIPKLYIKIAYCVSCAIHSHV 83
>RS26A_SCHPO (Q9UT56) 40S ribosomal protein S26-A| Length = 120 Score = 57.4 bits (137), Expect = 2e-08 Identities = 23/41 (56%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 N+VE AA+RD+ EA V+ Y +PK+Y K+ +CVSCAIHA + Sbjct: 43 NMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHARV 83
>RS26_CAEEL (O45499) 40S ribosomal protein S26| Length = 117 Score = 56.6 bits (135), Expect = 4e-08 Identities = 23/41 (56%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 NIVE AAVRD+ +A + Y LPKLY K+H+C++CAIH+ + Sbjct: 43 NIVEAAAVRDIGDASAYTQYALPKLYHKLHYCIACAIHSKV 83
>RS26B_SCHPO (Q9UTG4) 40S ribosomal protein S26-B| Length = 119 Score = 56.6 bits (135), Expect = 4e-08 Identities = 23/41 (56%), Positives = 32/41 (78%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 N+VE AA+RD+ EA V+ Y +PKLY K+ +CVSCAIH+ + Sbjct: 43 NMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRV 83
>RS26_NEUCR (P21772) 40S ribosomal protein S26E (CRP5) (13.6 kDa ribosomal| protein) Length = 119 Score = 53.1 bits (126), Expect = 4e-07 Identities = 22/41 (53%), Positives = 30/41 (73%) Frame = +1 Query: 4 NIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 N+VE AA+RD+ +A V Y +PK+Y K+ +CVSCAIH I Sbjct: 43 NMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIHGKI 83
>RS26_OXYNO (Q9BHU1) 40S ribosomal protein S26| Length = 125 Score = 45.8 bits (107), Expect = 6e-05 Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 2/43 (4%) Frame = +1 Query: 4 NIVEQAAVRDVQE--ACVHDGYVLPKLYAKVHHCVSCAIHAHI 126 N+V+ ++ RD+QE A + +PK+Y K+ +CVSCAIHA I Sbjct: 43 NMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHARI 85
>T22D2_HUMAN (O75157) TSC22 domain family protein 2 (TSC22-related-inducible| leucine zipper protein 4) Length = 780 Score = 30.8 bits (68), Expect = 2.2 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +2 Query: 104 LVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTALGLDKVARP 226 L+ L + +AP GG VS RSVSGA + L + P Sbjct: 89 LLDGQLAAAAAAPANGGGVVSARSVSGALASTLAAAATSAP 129
>DHAS_PROMA (P49420) Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (ASA| dehydrogenase) (ASADH) Length = 343 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +2 Query: 83 PRCTTVFLVPSMLTLSVSAPVRTGGTVSPRSVSGAGTTAL 202 P CTT+ L + LS P++ + +S SGAG A+ Sbjct: 135 PNCTTILLALVLAPLSAQLPIKRVVVSTYQSASGAGARAM 174
>YFCK_SHIFL (Q83QQ8) UPF0209 protein yfcK| Length = 668 Score = 29.6 bits (65), Expect = 4.8 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 31 DVQEACVHDGYVLPKLYAKVHHCVSCAIH 117 ++++ +DGY+ P+ A HHC+ + H Sbjct: 494 ELKQVLCYDGYLTPQNPANQHHCIGASYH 522
>YFCK_ECOLI (P77182) UPF0209 protein yfcK| Length = 668 Score = 29.6 bits (65), Expect = 4.8 Identities = 9/29 (31%), Positives = 18/29 (62%) Frame = +1 Query: 31 DVQEACVHDGYVLPKLYAKVHHCVSCAIH 117 ++++ +DGY+ P+ A HHC+ + H Sbjct: 494 ELKQVLCYDGYLTPQNPANQHHCIGASYH 522
>SYI_THETN (Q8R9L3) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 932 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/59 (27%), Positives = 23/59 (38%) Frame = -3 Query: 496 LNQKVLSDIDSSEIVKI*RPDHKLCLTNQLSVQPIAAKTRIVQYPGMSKTRAGTITEAY 320 L +++ D E P H C+ + S+ K R+ YP SK R T Y Sbjct: 693 LVKQLTESFDKYEFYDFFHPVHNFCVVDMSSLYLDILKDRLYTYPAKSKERKAAQTTLY 751
>YFCK_ECOL6 (Q8FFH0) UPF0209 protein yfcK| Length = 668 Score = 28.9 bits (63), Expect = 8.2 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = +1 Query: 34 VQEACVHDGYVLPKLYAKVHHCVSCAIH 117 +++ +DGY+ P+ A HHC+ + H Sbjct: 495 LKQVLCYDGYLTPQNPANQHHCIGASYH 522
>YFCK_ECO57 (Q8XCQ7) UPF0209 protein yfcK| Length = 668 Score = 28.9 bits (63), Expect = 8.2 Identities = 9/28 (32%), Positives = 17/28 (60%) Frame = +1 Query: 34 VQEACVHDGYVLPKLYAKVHHCVSCAIH 117 +++ +DGY+ P+ A HHC+ + H Sbjct: 495 LKQVLCYDGYLTPQNPANQHHCIGASYH 522
>SURE_DEHE1 (Q3Z8C0) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 265 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -3 Query: 472 IDSSEIVKI*RPDHKLCLTNQLSVQPIAAKTRI 374 I + + I PD LC N+L V P+A KT I Sbjct: 158 ISKNSFLNINTPDLPLCRINELRVTPLAHKTHI 190
>KPC1_YEAST (P24583) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)| Length = 1151 Score = 28.9 bits (63), Expect = 8.2 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +1 Query: 46 CVHDGYVLPKLYAKVHHCVSCAIHAH 123 C H GY+LP KV C C I H Sbjct: 495 CCHCGYILPWGRHKVRKCSECGIMCH 520
>GATA_CAUCR (Q9A5L0) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)| (Glu-ADT subunit A) Length = 489 Score = 28.9 bits (63), Expect = 8.2 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Frame = -3 Query: 460 EIVKI*RPDHKLCLTNQLSVQPIAAKTRIVQYPGMS---KTRAGTITEAYSQTRS 305 EIV I P K L V P A + + +Y GM + +TE Y TR+ Sbjct: 296 EIVDISLPHTKYALPAYYIVAPAEASSNLARYDGMRYGLREEGANLTEIYENTRA 350
>Y529_BUCBP (Q89A26) Hypothetical protein bbp_529 (yba3)| Length = 398 Score = 28.9 bits (63), Expect = 8.2 Identities = 13/17 (76%), Positives = 15/17 (88%) Frame = -3 Query: 496 LNQKVLSDIDSSEIVKI 446 LN VLSDIDS+EIVK+ Sbjct: 36 LNDSVLSDIDSNEIVKL 52 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,600,039 Number of Sequences: 219361 Number of extensions: 795566 Number of successful extensions: 2565 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2446 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2555 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
