ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19f23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ296273.1|HVU296273 Hordeum vulgare aba7 gene for stress responsive protein Length = 1841 Score = 787 bits (397), Expect = 0.0 Identities = 409/413 (99%) Strand = Plus / Plus Query: 1 tagacaccattagcattagagggagggtgcagcagcaggagttaaaggttcccttctcca 60 |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 1034 tagacaccattagcattagagggagggtgcagcagcaggagtcgaaggttctcttctcca 1093 Query: 61 aaggcgccgaagttcttcagcttggcaagtaagtgataatcaatggcttataggcttcca 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 1094 aaggcgccgaagttcttcagcttcgcaagtaagtgataatcaatggcttataggcttcca 1153 Query: 121 caggcaggagttaggacttccaatttcgagcgtagggagcttccatcaaacagctacctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1154 caggcaggagttaggacttccaatttcgagcgtagggagcttccatcaaacagctacctt 1213 Query: 181 gatctgggtgggccttatggaaaatttgtgcctttcataatcgctggtgaagggggcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1214 gatctgggtgggccttatggaaaatttgtgcctttcataatcgctggtgaagggggcttt 1273 Query: 241 ggggagcataagcagctcaactggacaaacttgtttttactgaacaagcttggcagtgac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 ggggagcataagcagctcaactggacaaacttgtttttactgaacaagcttggcagtgac 1333 Query: 301 ataggcagcgatcatgatgaggtgatcaatcaaatcaaagtagagaaagatgttgaaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1334 ataggcagcgatcatgatgaggtgatcaatcaaatcaaagtagagaaagatgttgaaaaa 1393 Query: 361 ataaaagagctgataaagcgactgcctcgtgaaatttctgagcaattggaagg 413 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1394 ataaaagagctgataaagcgactgcctcgtgaaatttctgagcaattggaagg 1446
>emb|X69817.1|HVABA7 H.vulgare ABA7 mRNA for ABA-induced protein Length = 841 Score = 787 bits (397), Expect = 0.0 Identities = 409/413 (99%) Strand = Plus / Plus Query: 1 tagacaccattagcattagagggagggtgcagcagcaggagttaaaggttcccttctcca 60 |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct: 34 tagacaccattagcattagagggagggtgcagcagcaggagtcgaaggttctcttctcca 93 Query: 61 aaggcgccgaagttcttcagcttggcaagtaagtgataatcaatggcttataggcttcca 120 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 94 aaggcgccgaagttcttcagcttcgcaagtaagtgataatcaatggcttataggcttcca 153 Query: 121 caggcaggagttaggacttccaatttcgagcgtagggagcttccatcaaacagctacctt 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 154 caggcaggagttaggacttccaatttcgagcgtagggagcttccatcaaacagctacctt 213 Query: 181 gatctgggtgggccttatggaaaatttgtgcctttcataatcgctggtgaagggggcttt 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 214 gatctgggtgggccttatggaaaatttgtgcctttcataatcgctggtgaagggggcttt 273 Query: 241 ggggagcataagcagctcaactggacaaacttgtttttactgaacaagcttggcagtgac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 274 ggggagcataagcagctcaactggacaaacttgtttttactgaacaagcttggcagtgac 333 Query: 301 ataggcagcgatcatgatgaggtgatcaatcaaatcaaagtagagaaagatgttgaaaaa 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 334 ataggcagcgatcatgatgaggtgatcaatcaaatcaaagtagagaaagatgttgaaaaa 393 Query: 361 ataaaagagctgataaagcgactgcctcgtgaaatttctgagcaattggaagg 413 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 394 ataaaagagctgataaagcgactgcctcgtgaaatttctgagcaattggaagg 446
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence Length = 1618915 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 324 gatcaatcaaatcaaagtagagaaagatg 352 ||||||||||||||||||| || |||||| Sbjct: 1582647 gatcaatcaaatcaaagtaaagtaagatg 1582675
>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence Length = 169543 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 324 gatcaatcaaatcaaagtagagaaagatg 352 ||||||||||||||||||| || |||||| Sbjct: 133275 gatcaatcaaatcaaagtaaagtaagatg 133303
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 344 agaaagatgttgaaaaaataaaaga 368 |||||||| |||||||||||||||| Sbjct: 89397 agaaagattttgaaaaaataaaaga 89421
>gb|AC116489.6| Mus musculus chromosome 18, clone RP24-137L16, complete sequence Length = 198242 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 261 ctggacaaacttgtttttactgaac 285 ||||||| ||||||||||||||||| Sbjct: 34586 ctggacacacttgtttttactgaac 34562
>gb|AC121523.6| Mus musculus chromosome 18, clone RP24-92N23, complete sequence Length = 202346 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 18 agagggagggtgcagcagcaggagt 42 ||||||||||||||||| ||||||| Sbjct: 139131 agagggagggtgcagcatcaggagt 139155
>emb|AL049545.6|HSDJ263J7 Human DNA sequence from clone RP1-263J7 on chromosome 6q14.3-15 Contains an 60S Ribosomal Protein L7 (RPL7) pseudogene and a RAB1, member RAS oncogene family (RAB1) pseudogene, complete sequence Length = 104081 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 324 gatcaatcaaatcaaagtagagaaa 348 ||||||||| ||||||||||||||| Sbjct: 70811 gatcaatcagatcaaagtagagaaa 70787
>emb|BX251411.1| Tropheryma whipplei TW08/27, complete genome; segment 2/3 Length = 299050 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 355 gaaaaaataaaagagctgataaagc 379 |||||||||||||||||||| |||| Sbjct: 165884 gaaaaaataaaagagctgatgaagc 165908
>gb|AC073607.19| Homo sapiens 12 BAC RP11-462G20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165085 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 332 aaatcaaagtagagaaagatg 352 ||||||||||||||||||||| Sbjct: 16796 aaatcaaagtagagaaagatg 16776
>dbj|D00184.1|STASCAG Staphylococcus aureus gene for staphylocoagulase, complete cds Length = 3042 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 gagaaagatgttgaaaaaata 363 ||||||||||||||||||||| Sbjct: 626 gagaaagatgttgaaaaaata 646
>emb|AJ311974.1|SAU311974 Staphylococcus aureus partial coa gene for coagulase, strain NTCT1803 Length = 1377 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 gagaaagatgttgaaaaaata 363 ||||||||||||||||||||| Sbjct: 391 gagaaagatgttgaaaaaata 411
>gb|AE014184.1| Tropheryma whipplei str. Twist, complete genome Length = 927303 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 355 gaaaaaataaaagagctgataaagc 379 |||||||||||||||||||| |||| Sbjct: 403479 gaaaaaataaaagagctgatgaagc 403455
>emb|BX469885.9| Zebrafish DNA sequence from clone DKEY-164N2 in linkage group 19, complete sequence Length = 87215 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 328 aatcaaatcaaagtagagaaa 348 ||||||||||||||||||||| Sbjct: 2365 aatcaaatcaaagtagagaaa 2385
>gb|AF488712.1| Mycoplasma synoviae clone KF6B lipoprotein hemagglutinin (vlhA) gene, partial cds Length = 2199 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 gttgaaaaaataaaagagct 371 |||||||||||||||||||| Sbjct: 2026 gttgaaaaaataaaagagct 2045
>gb|DQ180962.1| Erwinia pyrifoliae hrp gene cluster, partial sequence; and unknown genes Length = 28886 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 349 gatgttgaaaaaataaaagagctg 372 ||||||||| |||||||||||||| Sbjct: 20310 gatgttgaagaaataaaagagctg 20333
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 tgatgaggtgatcaatcaaatcaa 338 |||| ||||||||||||||||||| Sbjct: 1933874 tgatcaggtgatcaatcaaatcaa 1933851
>gb|AC148980.6| Mus musculus BAC clone RP23-230C16 from chromosome 7, complete sequence Length = 192433 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 agtagagaaagatgttgaaaaaataaaa 366 |||||||||||||||||| |||| |||| Sbjct: 99518 agtagagaaagatgttgagaaaacaaaa 99545
>ref|XM_382578.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02402.1) partial mRNA Length = 1194 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 ggcagtgacataggcagcga 311 |||||||||||||||||||| Sbjct: 405 ggcagtgacataggcagcga 386
>gb|AC110534.11| Mus musculus chromosome 17, clone RP23-174D11, complete sequence Length = 174600 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 339 agtagagaaagatgttgaaaaaataaaa 366 |||||||||||||||||| |||| |||| Sbjct: 96079 agtagagaaagatgttgagaaaacaaaa 96106
>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06, complete sequence Length = 122218 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 315 tgatgaggtgatcaatcaaatcaa 338 |||| ||||||||||||||||||| Sbjct: 41537 tgatcaggtgatcaatcaaatcaa 41560
>emb|BX571862.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 4/17 Length = 349519 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 264 gacaaacttgtttttactga 283 |||||||||||||||||||| Sbjct: 30115 gacaaacttgtttttactga 30096
>emb|CR749745.16| Zebrafish DNA sequence from clone DKEY-7O20 in linkage group 5, complete sequence Length = 110199 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 atgttgaaaaaataaaagag 369 |||||||||||||||||||| Sbjct: 65369 atgttgaaaaaataaaagag 65388
>gb|DP000058.1| Felis catus target 117 genomic scaffold Length = 458092 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 284 acaagcttggcagtgacataggca 307 |||||||||| ||||||||||||| Sbjct: 48886 acaagcttggtagtgacataggca 48863
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 329 atcaaatcaaagtagagaaa 348 |||||||||||||||||||| Sbjct: 1718850 atcaaatcaaagtagagaaa 1718869
>ref|XM_631533.1| Dictyostelium discoideum AX4 hypothetical protein (DDB0191153), partial mRNA Length = 498 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tagagaaagatgttgaaaaaataa 364 |||| ||||||||||||||||||| Sbjct: 23 tagaaaaagatgttgaaaaaataa 46
>gb|AC092805.2| Homo sapiens chromosome 1 clone RP11-99A8, complete sequence Length = 162587 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cattagcattagagggaggg 27 |||||||||||||||||||| Sbjct: 146858 cattagcattagagggaggg 146877
>gb|AF120501.1|AF120501 Ancylostoma ceylanicum cysteine proteinase mRNA, complete cds Length = 1100 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gtagagaaagatgttgaaaa 359 |||||||||||||||||||| Sbjct: 98 gtagagaaagatgttgaaaa 117
>gb|AC127352.5| Mus musculus BAC clone RP23-81P4 from chromosome 7, complete sequence Length = 196031 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 339 agtagagaaagatgttgaaaaaataaaa 366 |||||||||||||||||| |||| |||| Sbjct: 159694 agtagagaaagatgttgagaaaacaaaa 159667
>ref|NM_066767.3| Caenorhabditis elegans R10E11.5 (R10E11.5) mRNA, complete cds Length = 1706 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 338 aagtagagaaagatgttgaaaaaa 361 ||||| |||||||||||||||||| Sbjct: 1244 aagtaaagaaagatgttgaaaaaa 1267
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 tgatgaggtgatcaatcaaatcaa 338 |||| ||||||||||||||||||| Sbjct: 1933872 tgatcaggtgatcaatcaaatcaa 1933849
>gb|AF195902.1|AF195902 Lactobacillus johnsonii prophage Lj928 late gene cluster sequence Length = 7120 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 aataaaagagctgataaagcgact 383 ||||||| |||||||||||||||| Sbjct: 2242 aataaaaaagctgataaagcgact 2265
>gb|AF339098.1|AF339098 Ancylostoma ceylanicum cathepsin b-like precursor protein mRNA, partial cds Length = 555 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gtagagaaagatgttgaaaa 359 |||||||||||||||||||| Sbjct: 94 gtagagaaagatgttgaaaa 113
>gb|AF288090.1| Rhodomonas salina mitochondrial DNA, complete genome Length = 48063 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 acaaacttgtttttactgaa 284 |||||||||||||||||||| Sbjct: 33467 acaaacttgtttttactgaa 33486
>gb|AF494013.1| Phytophthora infestans putative endo-1,3-beta-glucanase (endo1) gene, complete cds Length = 3149 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 tcgagcgtagggagcttcca 165 |||||||||||||||||||| Sbjct: 1860 tcgagcgtagggagcttcca 1841
>gb|AC083874.2|AC083874 Homo sapiens chromosome 7 clone RP11-792L21, complete sequence Length = 186281 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 atggaaaatttgtgcctttc 216 |||||||||||||||||||| Sbjct: 99103 atggaaaatttgtgcctttc 99084
>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome Length = 3031430 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 348 agatgttgaaaaaataaaag 367 |||||||||||||||||||| Sbjct: 696213 agatgttgaaaaaataaaag 696232
>emb|BX321890.5| Zebrafish DNA sequence from clone CH211-258D5 in linkage group 5, complete sequence Length = 147231 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 atgttgaaaaaataaaagag 369 |||||||||||||||||||| Sbjct: 126260 atgttgaaaaaataaaagag 126241
>gb|BC098728.1| Rattus norvegicus eukaryotic translation initiation factor 3, subunit 9 (eta), mRNA (cDNA clone MGC:112720 IMAGE:7381504), complete cds Length = 2948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 gcagcagcaggagttaaagg 48 |||||||||||||||||||| Sbjct: 2701 gcagcagcaggagttaaagg 2682
>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome Length = 1664970 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 tagagaaagatgttgaaaaaataaaaga 368 |||| |||| |||||||||||||||||| Sbjct: 113294 tagaaaaagttgttgaaaaaataaaaga 113267
>ref|NM_001031640.1| Rattus norvegicus eukaryotic translation initiation factor 3, subunit 9 (eta) (Eif3s9), mRNA Length = 2948 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 gcagcagcaggagttaaagg 48 |||||||||||||||||||| Sbjct: 2701 gcagcagcaggagttaaagg 2682
>emb|AL928555.8| Zebrafish DNA sequence from clone DKEY-29E5, complete sequence Length = 189224 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 87 aagtaagtgataatcaatggctta 110 ||||||| |||||||||||||||| Sbjct: 52150 aagtaagggataatcaatggctta 52173
>dbj|AP004492.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT08D16, TM0025a, complete sequence Length = 51575 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gcaagtaagtgataatcaat 104 |||||||||||||||||||| Sbjct: 17348 gcaagtaagtgataatcaat 17367
>dbj|AB070451.1| Dictyostelium discoideum cbpH mRNA for calcium binding protein CBP8, complete cds, clone:SSD753 Length = 655 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 341 tagagaaagatgttgaaaaaataa 364 |||| ||||||||||||||||||| Sbjct: 51 tagaaaaagatgttgaaaaaataa 74 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,009,669 Number of Sequences: 3902068 Number of extensions: 5009669 Number of successful extensions: 100251 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100039 Number of HSP's gapped (non-prelim): 212 length of query: 413 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 391 effective length of database: 17,147,199,772 effective search space: 6704555110852 effective search space used: 6704555110852 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
