>IF3I_HUMAN (Q9Y262) Eukaryotic translation initiation factor 3 subunit|
           6-interacting protein
          Length = 564

 Score =  124 bits (311), Expect = 1e-28
 Identities = 68/148 (45%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
 Frame = +2

Query: 32  QGVYTIVIGSHISTIYHYGFANLMMRRYVDATKEFNKILLYIIKYKQYHQKSP-QYDQIL 208
           + +Y+ V    ++T Y+ GFA LMMRRY DA + F  ILLYI + K   Q++  +Y+ I 
Sbjct: 302 KSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMIN 361

Query: 209 KKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTXMQRFDDEAYAAYDELFSYA 388
           K+NEQM+ALLAI L++ P    IDE++  QL+EKY DKM  MQ+ D +    Y+ELFSY+
Sbjct: 362 KQNEQMHALLAIALTMYPMR--IDESIHLQLREKYGDKMLRMQKGDPQ---VYEELFSYS 416

Query: 389 CPKFITPSPPVLDQPLTNYNQDAYRLQL 472
           CPKF++P  P  D    NY+++ +  QL
Sbjct: 417 CPKFLSPVVPNYDNVHPNYHKEPFLQQL 444

>KIF5C_HUMAN (O60282) Kinesin heavy chain isoform 5C (Kinesin heavy chain|
           neuron-specific 2)
          Length = 957

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 11/114 (9%)
 Frame = +2

Query: 44  TIVIGSHISTIYHYGFANLMM-----RRYVDATKEFNKILLYIIKYKQYHQKSPQYDQIL 208
           T++ G    TI +    NL +     ++  +  KE NK L  +I++ +      +  + +
Sbjct: 317 TLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKTLKNVIQHLEMELNRWRNGEAV 376

Query: 209 KKNEQMYALLAICLSLCPQNKLIDE------NVSTQLKEKYNDKMTXMQRFDDE 352
            ++EQ+ A     L  C    +ID        +ST+ KEKY+++++ + R  D+
Sbjct: 377 PEDEQISAKDQKNLEPCDNTPIIDNIAPVVAGISTEEKEKYDEEISSLYRQLDD 430

>RPOC_PLAFA (P21422) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6)|
          Length = 575

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 77  YHYGFANLMMRRYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYAL 235
           Y Y F+N+  ++Y    K F+KI LY  KYK   Q    ++ + KK + +  L
Sbjct: 145 YKYFFSNIKYKQYFYYNKLFSKINLYKKKYKNIIQYLFSHNILYKKLQNINLL 197

>SYI_BUCAI (P57249) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
            ligase) (IleRS)
          Length = 940

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 22/102 (21%), Positives = 42/102 (41%)
 Frame = +2

Query: 80   HYGFANLMMRRYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLC 259
            +Y F  ++ R     + E     L IIK +QY  K    ++   +    Y + ++   + 
Sbjct: 707  NYNFHAVIQRLMYFCSIEMGSFYLDIIKDRQYTLKKHSQERRSSQTAIYYIINSLVRWIA 766

Query: 260  PQNKLIDENVSTQLKEKYNDKMTXMQRFDDEAYAAYDELFSY 385
            P      + + + L E  +  +   + FD   Y   D+LF+Y
Sbjct: 767  PILSFTADEIWSYLPENNSQYVFMEEWFDKLFYLDQDDLFNY 808

>VP2_ROTBU (P17462) RNA-binding protein VP2 (Major internal core protein)|
          Length = 881

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 122 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 211
           +TKE +K LL ++K K+ HQK  QY+ + K
Sbjct: 64  STKEESKQLLEVLKTKEEHQKEIQYEILQK 93

>VP2_ROTBR (P12472) RNA-binding protein VP2 (Major internal core protein)|
          Length = 880

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 122 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 211
           +TKE +K LL ++K K+ HQK  QY+ + K
Sbjct: 64  STKEESKQLLEVLKTKEEHQKEIQYEILQK 93

>CAPS_CAEEL (Q23658) Calcium-dependent secretion activator (Uncoordinated|
           protein 31)
          Length = 1260

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +2

Query: 161 KYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKMTXMQR 340
           K +Q   K+ + ++  KKN QMY  LA C++     +   +    Q+K    +     +R
Sbjct: 43  KEEQERMKAEREEEDHKKNLQMYMFLARCIAYPFNGQQTGDMARRQMKVNKQELARIRER 102

Query: 341 F----DDEAYAAYDELFSYACPKF 400
           F      E   A DE F+ A   +
Sbjct: 103 FTLFLKGETNIAADEAFTKAIQSY 126

>HGLB_SCHMA (P09841) Hemoglobinase precursor (EC 3.4.22.34) (Antigen SM32)|
          Length = 429

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 110 RYVDATKEFNKILLYIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLI-DEN 286
           +Y+ + K ++K+++YI    + ++    + QIL  N  +YA  A   + C  +    D  
Sbjct: 174 KYLHSHKRYSKLVIYI----EANESGSMFQQILPSNLSIYATTAANSTECSYSTFCGDPT 229

Query: 287 VSTQLKEKYN 316
           ++T L + Y+
Sbjct: 230 ITTCLADLYS 239

>OKP1_YEAST (P53298) Central kinetochore subunit OKP1 (Outer kinetochore|
           protein 1)
          Length = 406

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/58 (27%), Positives = 33/58 (56%)
 Frame = +2

Query: 152 YIIKYKQYHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKYNDKM 325
           YI   +Q+ Q   +Y Q L+ NE++ A+L+   +L  + + +  N+ T  K++  +K+
Sbjct: 236 YIYSKRQFIQN--RYSQELQNNERLEAILSREQNLLEETRKLCMNLKTNNKKRLTEKL 291

>AHM4_ARATH (Q9SZW5) Putative cadmium/zinc-transporting ATPase 4 (EC 3.6.3.3)|
           (EC 3.6.3.5)
          Length = 760

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 366 MMSYFRTPAPSLLLHHLQFWTSHLQIITRTPI 461
           M+S FR+ +PS+ LH L +W S ++  +  P+
Sbjct: 408 MVSDFRSLSPSINLHKLLYWVSSIECKSSHPM 439

>SYL_MYCPU (Q98RB6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 807

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 239 AICLSLCPQNKLIDENVSTQLKEKYNDKMTXMQRFDDEAYAAYDE 373
           A  L++ P++ L+++ V+++ KEK  D +   ++ DD   A  +E
Sbjct: 257 ATFLTISPEHPLVEKIVTSENKEKVKDFIKEFEKLDDRQKADKNE 301

>VL2_HPV26 (P36754) Minor capsid protein L2|
          Length = 472

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 341 FDDEAYAAYDELFSYACPKFITPSPPVLD 427
           FD+ AY   DE  +YA    + P P  LD
Sbjct: 252 FDNPAYEPIDETLTYASSSTVAPDPDFLD 280

>CENPF_HUMAN (P49454) CENP-F kinetochore protein (Centromere protein F) (Mitosin)|
            (AH antigen)
          Length = 3210

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 173  YHQKSPQYDQILKKNEQMYALLAICLSLCPQNKLIDENVSTQLKEKY 313
            Y   S +Y    +KN ++  LL  C SLC   K    N   QLKE +
Sbjct: 1036 YEDLSQKYKAAQEKNSKLECLLNECTSLCENRK----NELEQLKEAF 1078

>WOX3_ARATH (Q9SIB4) WUSCHEL-related homeobox 3 (Protein PRESSED FLOWER)|
          Length = 244

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = -3

Query: 371 HHRQHMLHHQTSAXLSFCHCTFLSAGC*HFHL*VCFADTEIGKLPAAHTSAHFSSESGRT 192
           HH  H  HH+    +SF  C+  S  C      +    T +G+ P+   + ++ ++SG  
Sbjct: 118 HHNHHHNHHRPYDHMSFDCCSHPSPMC------LPHQGTGVGEAPSKVMNEYYCTKSGAE 171

Query: 191 E 189
           E
Sbjct: 172 E 172

>VP2_ROTS1 (P22672) RNA-binding protein VP2 (Major internal core protein)|
          Length = 881

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 122 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 211
           + KE +K LL ++K K+ HQK  QY+ + K
Sbjct: 66  SNKEESKQLLEVLKTKEEHQKEVQYEILQK 95

>VP2_ROTHW (P11231) RNA-binding protein VP2 (Major internal core protein)|
          Length = 890

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +2

Query: 122 ATKEFNKILLYIIKYKQYHQKSPQYDQILK 211
           ++KE +K LL I+K K+ HQK  QY+ + K
Sbjct: 72  SSKEESKQLLEILKTKEDHQKEIQYEILQK 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,336,160
Number of Sequences: 219361
Number of extensions: 1347953
Number of successful extensions: 3879
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3874
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)