ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19f02 |
|---|---|
| Clone Library Name | barley_pub |
>SQV2_CAEEL (Q9N491) Beta-1,3-galactosyltransferase sqv-2 (EC 2.4.1.134)| (Squashed vulva protein 2) Length = 330 Score = 56.6 bits (135), Expect = 6e-08 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 3/152 (1%) Frame = +3 Query: 117 IGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGIAV---RFIVGRSANRGDRFDREID 287 I I+TS R VR +W + KG +V +F VG + R + Sbjct: 62 ISILTSPNETERRQNVRDTWFRLST--------KGPSVFIAKFAVGTMGLAAED-RRLLA 112 Query: 288 DENRSTNDFVILDDHTESDEELPKKTKRYFANAAETFDAEFYAKVNDDIYINVDTLSAML 467 +EN D +LD H ES E L KKT F +A F +F+ K + D ++ + L L Sbjct: 113 EENEKFGDLALLDRHEESYERLAKKTLACFVHAFANFKFKFFLKTDIDSFVRITPLIINL 172 Query: 468 ETHWDKPRVYIGCMKSGEVFSEATHKWYEPDW 563 + D P +Y G + G KW EP+W Sbjct: 173 KQIQD-PMLYWGFL-DGRAKPFRKGKWKEPEW 202
>B3GT1_PONPY (Q9MYM7) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT1_PANTR (Q7JK26) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT1_PANPA (Q7JK25) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT1_MOUSE (O54904) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (UDP-Gal:betaGlcNAc beta 1,3-galactosyltranferase-I) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT1_HUMAN (Q9Y5Z6) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (Beta3GalT1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT1_GORGO (Q7JK24) Beta-1,3-galactosyltransferase 1 (EC 2.4.1.-)| (Beta-1,3-GalTase 1) (UDP-galactose:beta-N-acetyl-glucosamine-beta-1, 3-galactosyltransferase 1) (Beta3GalT1) Length = 326 Score = 50.4 bits (119), Expect = 4e-06 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 7/188 (3%) Frame = +3 Query: 105 PLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGI--AVRFIVGRSANRGDRFDR 278 P +VI I T+ + R A+R++W + KGI A F++G++A+ ++ Sbjct: 78 PFLVILISTTHKEFDARQAIRETWGDENNF-------KGIKIATLFLLGKNAD--PVLNQ 128 Query: 279 EIDDENRSTNDFVILDDHTESDEELPKKT---KRYFANAAETFDAEFYAKVNDDIYINVD 449 ++ E++ +D +I++D +S L KT R+ A A++ K + DI++N+D Sbjct: 129 MVEQESQIFHD-IIVEDFIDSYHNLTLKTLMGMRWVATFCSK--AKYVMKTDSDIFVNMD 185 Query: 450 TLSAMLETHWDKP--RVYIGCMKSGEVFSEATHKWYEPDWWKFGDGKSYFRHASGEMFIV 623 L L KP R + G + +G + KWY P +Y SG +I Sbjct: 186 NLIYKLLKPSTKPRRRYFTGYVINGGPIRDVRSKWYMPR--DLYPDSNYPPFCSGTGYIF 243 Query: 624 SRAVAQFI 647 S VA+ I Sbjct: 244 SADVAELI 251
>B3GT3_RAT (Q6AY39) Beta-1,3-galactosyltransferase 3 (EC 2.4.1.79)| (Beta-1,3-GalTase 3) (Beta3Gal-T3) (b3Gal-T3) (Galactosylgalactosylglucosylceramide beta-D-acetyl-galactosaminyltransferase) (UDP-N-acetylgalactosamine:globotriaosylceramide beta-1,3-N-ace Length = 331 Score = 37.0 bits (84), Expect = 0.051 Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 2/137 (1%) Frame = +3 Query: 51 RIXWQYTXETNATHSRKKPLVVIGIMTSFGRKNYRDAVRKSWLPTGSLLKKLEDEKGIAV 230 R +Q+T ++ S++ P +VI + + R A+R +W KK + Sbjct: 60 RQDFQFTLREHSNCSQQNPFLVILVTSRPSDVKARQAIRVTWGE-----KKTWWGHEVLT 114 Query: 231 RFIVGRSANRGDR-FDREIDDENRSTNDFVILDDHTESDEELPKKTKRYFANAAETF-DA 404 F++G+ A R D+ ++DE+ D +I D ++ L KT F E +A Sbjct: 115 FFLLGQEAEREDKVLALSLEDEHALYGD-IIRQDFLDTYNNLTLKTIMAFRWVIEFCPNA 173 Query: 405 EFYAKVNDDIYINVDTL 455 ++ K + D++IN L Sbjct: 174 KYVMKTDTDVFINTGNL 190
>PVG3_SCHPO (Q9USX0) Beta-1,3-galactosyltransferase pvg3 (EC 2.4.1.134)| (Pyruvylated Gal-beta-1,3-epitope synthesis protein 3) (PvGal synthesis protein 3) Length = 378 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +3 Query: 399 DAEFYAKVNDDIYINVDTLSAMLETHWDKPRVYIG 503 D +F K +DD ++N+ L ML+ H K R Y G Sbjct: 203 DYDFIVKADDDSFLNLPRLFEMLKEHVGKSRFYFG 237
>PI5K1_ORYSA (Q6EX42) Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (EC| 2.7.1.68) (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) Length = 801 Score = 31.6 bits (70), Expect = 2.1 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%) Frame = +3 Query: 477 WDKPRVYIGCMKSGEVFSEATHKWYEPDW----WKFG--DGKSYFRHASGEMFI 620 W VYIG KSG++ +W D W G GK Y ++ASG +I Sbjct: 150 WADGNVYIGRWKSGKMNGSGVMQWINGDTLDCNWLNGLAHGKGYCKYASGACYI 203
>YQDA_CAEEL (Q09268) Hypothetical RING finger protein C32D5.10 in chromosome II| Length = 610 Score = 30.4 bits (67), Expect = 4.8 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 18/101 (17%) Frame = +3 Query: 243 GRSANRGDRFDREIDDENRSTNDFVILDDHTESDEELPKKTKRYFANAAETFDAEFYAKV 422 G + +RG EIDD++ + V DD +SDE R ++N+ E D E Sbjct: 437 GSARSRGSDSVVEIDDDDDNDGVDVDDDDREDSDE------PRTYSNSEEDSDEEIQVVE 490 Query: 423 NDDIYINVDTLSAM------------------LETHWDKPR 491 DD I D+ ++ LE HW K + Sbjct: 491 RDDTIILDDSNRSLPKPVANGSADRKRKYEFPLEDHWKKAK 531
>VGLH_HHV6Z (P52543) Glycoprotein H precursor| Length = 694 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 8/93 (8%) Frame = -3 Query: 437 VYIIIDLSIKFSIKCLCS--------ISKVTFCLLRKLFIRLCMIIQNHKIICTSILVID 282 VY D++ +I+CL + VTF + I+ + I+ TSI++ Sbjct: 510 VYRPPDMARVAAIQCLSPSEPAASLPLPNVTFVISPSYVIKGVSLTITTTIVATSIIITA 569 Query: 281 FPVKTISSICTSSNYETYSNAFLIFEFLQQ*TC 183 P ++S C S+NY+ L+ + TC Sbjct: 570 IP---LNSTCVSTNYKYAGQDLLVLRNISSQTC 599
>PCDGM_PANTR (Q5DRA2) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 30.4 bits (67), Expect = 4.8 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 604 EACRKYDFPSPNFHQSGSYHLWVASEKT 521 + CR+ D PSP+F++ S +L V+S+ T Sbjct: 729 QCCRRQDSPSPDFYKQSSPNLQVSSDGT 756
>PCDGM_HUMAN (Q9Y5F6) Protocadherin gamma C5 precursor (PCDH-gamma-C5)| Length = 944 Score = 30.4 bits (67), Expect = 4.8 Identities = 12/28 (42%), Positives = 20/28 (71%) Frame = -1 Query: 604 EACRKYDFPSPNFHQSGSYHLWVASEKT 521 + CR+ D PSP+F++ S +L V+S+ T Sbjct: 729 QCCRRQDSPSPDFYKQSSPNLQVSSDGT 756
>TRUD_NATPD (Q3IMF3) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)| (tRNA-uridine isomerase D) (tRNA pseudouridylate synthase D) Length = 435 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/44 (38%), Positives = 24/44 (54%) Frame = +3 Query: 267 RFDREIDDENRSTNDFVILDDHTESDEELPKKTKRYFANAAETF 398 RF+R I NR DD+ + EELP +R F NAA+++ Sbjct: 243 RFERAI--ANRLAEGAESPDDYRAALEELPSNLQRMFVNAAQSY 284
>VGLH_HHV6U (P68324) Glycoprotein H precursor| Length = 694 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = -3 Query: 386 SISKVTFCLLRKLFIRLCMIIQNHKIICTSILVIDFPVKTISSICTSSNYETYSNAFLIF 207 ++ VTF + I+ + I+ TSI++ P ++S C S+NY+ L+ Sbjct: 535 TLPNVTFVISPSYVIKGVSLTITTTIVATSIIITAIP---LNSTCVSTNYKYAGQDLLVL 591 Query: 206 EFLQQ*TC 183 + TC Sbjct: 592 RNISSQTC 599
>VGLH_HHV6G (P68323) Glycoprotein H precursor| Length = 694 Score = 30.0 bits (66), Expect = 6.2 Identities = 17/68 (25%), Positives = 31/68 (45%) Frame = -3 Query: 386 SISKVTFCLLRKLFIRLCMIIQNHKIICTSILVIDFPVKTISSICTSSNYETYSNAFLIF 207 ++ VTF + I+ + I+ TSI++ P ++S C S+NY+ L+ Sbjct: 535 TLPNVTFVISPSYVIKGVSLTITTTIVATSIIITAIP---LNSTCVSTNYKYAGQDLLVL 591 Query: 206 EFLQQ*TC 183 + TC Sbjct: 592 RNISSQTC 599
>LFNG_XENLA (P79948) Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe| (EC 2.4.1.222) (O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Length = 375 Score = 29.6 bits (65), Expect = 8.1 Identities = 13/35 (37%), Positives = 21/35 (60%) Frame = +3 Query: 399 DAEFYAKVNDDIYINVDTLSAMLETHWDKPRVYIG 503 D +++ V+DD Y+NV TL +L + +YIG Sbjct: 188 DKKWFCHVDDDNYVNVRTLVKLLSRYSHTNDIYIG 222 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,598,597 Number of Sequences: 219361 Number of extensions: 1679986 Number of successful extensions: 4842 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 4655 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4827 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
