>CI041_MOUSE (Q80UY1) Protein C9orf41 homolog|
          Length = 400

 Score =  199 bits (506), Expect = 6e-51
 Identities = 90/186 (48%), Positives = 129/186 (69%), Gaps = 3/186 (1%)
 Frame = +3

Query: 126 KVRCIIRNIVRDWAQEGQIERDECFKPILEELNRLFPDRSSPPS---CLVPGAGLGRLAL 296
           K++  ++  VRDW++ G+ ERD C+KPI++E+ + FP     PS    LVPGAGLGRLA 
Sbjct: 148 KLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAW 207

Query: 297 EISSLGFVSQGNEFSYYMMICSSFILNHTQEANEWTIYPWIHSNCNSLSDKDQLRAVSFP 476
           E++ LG+  QGNE+S++M+  S+F+LN   E N++ +YPWIH   N+    DQ+R + FP
Sbjct: 208 EVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPILFP 267

Query: 477 DIHPSSAGITEGFSMCAGDFVEVYNEESQESAWDAVVTCFFIDTAHNIVEYIEIISKILK 656
           D+ P S      FSM AGDF E+Y   S+ +AWD + TCFFIDTAHN+++YI+ I +ILK
Sbjct: 268 DVDPHSLPPGSNFSMTAGDFQEIY---SECNAWDCIATCFFIDTAHNVIDYIDTIWRILK 324

Query: 657 DGGVWV 674
            GG+W+
Sbjct: 325 PGGIWI 330

>CI041_HUMAN (Q8N4J0) Protein C9orf41|
          Length = 409

 Score =  197 bits (502), Expect = 2e-50
 Identities = 90/186 (48%), Positives = 128/186 (68%), Gaps = 3/186 (1%)
 Frame = +3

Query: 126 KVRCIIRNIVRDWAQEGQIERDECFKPILEELNRLFPDRSSPPS---CLVPGAGLGRLAL 296
           K++  ++  VRDW++ G+ ERD C++PI++E+ + FP     PS    LVPGAGLGRLA 
Sbjct: 157 KLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGRLAW 216

Query: 297 EISSLGFVSQGNEFSYYMMICSSFILNHTQEANEWTIYPWIHSNCNSLSDKDQLRAVSFP 476
           EI+ LG+  QGNE+S++M+  S+F+LN   E N++ +YPWIH   N+    DQ+R + FP
Sbjct: 217 EIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPIFFP 276

Query: 477 DIHPSSAGITEGFSMCAGDFVEVYNEESQESAWDAVVTCFFIDTAHNIVEYIEIISKILK 656
           D+ P S      FSM AGDF E+Y   S+ + WD + TCFFIDTAHN+++YI+ I KILK
Sbjct: 277 DVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWKILK 333

Query: 657 DGGVWV 674
            GG+W+
Sbjct: 334 PGGIWI 339

>CI041_RAT (Q5BJZ6) Protein C9orf41 homolog|
          Length = 400

 Score =  195 bits (495), Expect = 1e-49
 Identities = 89/186 (47%), Positives = 127/186 (68%), Gaps = 3/186 (1%)
 Frame = +3

Query: 126 KVRCIIRNIVRDWAQEGQIERDECFKPILEELNRLFPDRSSPPS---CLVPGAGLGRLAL 296
           K++  ++  VRDW+  G+ ERD C+KPI++E+ + FP     PS    LVPGAGLGRLA 
Sbjct: 148 KLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGRLAW 207

Query: 297 EISSLGFVSQGNEFSYYMMICSSFILNHTQEANEWTIYPWIHSNCNSLSDKDQLRAVSFP 476
           EI+ LG+  QGNE+S++M+  S+F+LN   E +++ +YPWIH   N+    DQ+R + FP
Sbjct: 208 EIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPIFFP 267

Query: 477 DIHPSSAGITEGFSMCAGDFVEVYNEESQESAWDAVVTCFFIDTAHNIVEYIEIISKILK 656
           D+ P S      FSM AGDF E+Y   S+ + WD + TCFFIDTAHN+++YI+ I +ILK
Sbjct: 268 DVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWRILK 324

Query: 657 DGGVWV 674
            GG+W+
Sbjct: 325 PGGIWI 330

>YNJ2_YEAST (P53934) Hypothetical 45.5 kDa protein in YPT53-RHO2 intergenic|
           region
          Length = 400

 Score =  117 bits (294), Expect = 2e-26
 Identities = 68/203 (33%), Positives = 107/203 (52%), Gaps = 21/203 (10%)
 Frame = +3

Query: 126 KVRCIIRNIVRDWAQEGQIERDECFKPILEELNRLFPDRSSPPSCLVPGAGLGRLALEIS 305
           K   ++  + R+W+ E   ER+     ++  L  L P ++     L+PG G GRL +++S
Sbjct: 101 KTCSLLTQVYREWSAEAISERNCLNSRLVPFLKTLSPPKAD---ILIPGCGTGRLLVDLS 157

Query: 306 SLGFVSQGNEFSYYMMICSSFILNHTQEANEWTIYPWIHSNCNSLSDKDQLRAVSFPDIH 485
            +G+  +GNEFSY+M++ S ++LN     N+  IYP+IH   +    +DQL  +  PDI 
Sbjct: 158 RMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIKVPDIE 217

Query: 486 PSSAGITEG-FSMCAGDFVEVY--------------------NEESQESAWDAVVTCFFI 602
             S+    G  S+CAG FV+ Y                    +    E++ D VVT FFI
Sbjct: 218 AWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSKDVVVTNFFI 277

Query: 603 DTAHNIVEYIEIISKILKDGGVW 671
           DT  NI++Y++ I  +LK GG+W
Sbjct: 278 DTGSNILDYLDTIGHVLKPGGIW 300

>YM59_YEAST (Q03648) Hypothetical 52.2 kDa protein in RAR1-SCJ1 intergenic|
           region
          Length = 457

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 50/180 (27%), Positives = 87/180 (48%), Gaps = 8/180 (4%)
 Frame = +3

Query: 141 IRNIVRDWAQEGQIERDECFKPILEELNRLF---PDRSSPPSCLVPGAGLGRLALEISSL 311
           + ++ RD++    +ERD     I+  +N       D       + PGAG+G L+  +++ 
Sbjct: 210 LAHLCRDFSSYYSVERDPLQNFIISRINHHVISAGDMKEKILIVTPGAGVGGLSHTLATT 269

Query: 312 GFVSQGN--EFSYYMMICSSFILNHTQEANEWTIYPWIHS-NCNSLSDKDQLRAVSFPDI 482
               Q +  E S  M IC+ F L +  +     I P++   +C ++ D +QLR++S  D+
Sbjct: 270 FPKIQVDSIELSALMYICNLFALEYKHDVK---IRPFVQQYSCQTVFD-NQLRSLS-ADL 324

Query: 483 HPSSAGITEGFSMCAGDFVEVYNEESQESAWDAVVTC--FFIDTAHNIVEYIEIISKILK 656
             S  G         GDF   Y+  S++  +D ++ C  +FIDTA N+ EY+  I  + K
Sbjct: 325 --SKVGHRSNLDPLWGDFTR-YSPISKD--YDKIIICSAYFIDTAENMFEYLSSIEALKK 379

>COQ5_BRARE (Q66L51) Ubiquinone biosynthesis methyltransferase COQ5,|
           mitochondrial precursor (EC 2.1.1.-)
          Length = 327

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 19/57 (33%), Positives = 29/57 (50%)
 Frame = +3

Query: 495 AGITEGFSMCAGDFVEVYNEESQESAWDAVVTCFFIDTAHNIVEYIEIISKILKDGG 665
           AGIT G S  AGD  E+  ++ Q   +D     F I    +I + ++   ++LK GG
Sbjct: 187 AGITTGLSWVAGDAEELPFDDDQ---FDMYTIAFGIRNVTHIEQALQEAFRVLKPGG 240

>Y629_METJA (Q58046) Hypothetical UPF0111 protein MJ0629|
          Length = 214

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 564 ESAWDAVVTCFFIDTAHNIVEYIEIIS 644
           ES W+  + C FID   NI +YIE ++
Sbjct: 177 ESFWEGKILCDFIDNIVNISDYIEDVA 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,222,056
Number of Sequences: 219361
Number of extensions: 2138389
Number of successful extensions: 5817
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5807
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)