ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19e09 |
|---|---|
| Clone Library Name | barley_pub |
>MFD_SYNY3 (Q55750) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1199 Score = 107 bits (266), Expect = 2e-23 Identities = 51/99 (51%), Positives = 74/99 (74%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 K +DVLTL+ATPIPRTLY++L+G R+ SL++TPPP R + T++S ++ E +AI+ E Sbjct: 792 KTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNE 851 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 L RGGQVFYVVPRI+ I+++ L+ +P +AI HG+ Sbjct: 852 LDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQ 890 Score = 53.9 bits (128), Expect = 2e-07 Identities = 23/54 (42%), Positives = 37/54 (68%) Frame = +1 Query: 307 RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDMLFDS 468 RL A++E S LG G+ +A +DM IRG G++ G +QSG + +G + + +ML D+ Sbjct: 975 RLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDA 1028
>MFD_MYXXA (O52236) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1201 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/107 (41%), Positives = 74/107 (69%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 ++ IDVLTL+ATPIPRTL+++++G RD S+++TPP +R A+ T+V + AI+ E Sbjct: 801 RSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIERE 860 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEE 327 + RGGQVF+V R++++ + L+ +P V + +AHG+ G +E+ Sbjct: 861 VARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEK 907 Score = 50.8 bits (120), Expect = 2e-06 Identities = 25/64 (39%), Positives = 40/64 (62%), Gaps = 3/64 (4%) Frame = +1 Query: 277 VPMAIAHGKD---RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLF 447 VP A KD RL ++ ++LG GF +A D+ IRG G++ G++QSG +A +G D++ Sbjct: 971 VPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMY 1030 Query: 448 FDML 459 +L Sbjct: 1031 AQLL 1034
>MFD_BACSU (P37474) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1177 Score = 91.7 bits (226), Expect = 9e-19 Identities = 45/99 (45%), Positives = 66/99 (66%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 KA++DVLTL+ATPIPRTL++++ G RD S++ TPP R V TYV ++ AI+ E Sbjct: 769 KANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERE 828 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 L RGGQV+++ R++ I+ + +PD +A AHGK Sbjct: 829 LARGGQVYFLYNRVEDIERKADEISMLVPDAKVAYAHGK 867 Score = 53.5 bits (127), Expect = 3e-07 Identities = 25/51 (49%), Positives = 36/51 (70%) Frame = +1 Query: 307 RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDML 459 RL AI+E ++LG GF +A +D+ IRG G++ G QQ G + +VG DL+ ML Sbjct: 952 RLQAIKEFTELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQML 1002
>MFD_ECOLI (P30958) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1148 Score = 90.9 bits (224), Expect = 1e-18 Identities = 44/106 (41%), Positives = 70/106 (66%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 +A++D+LTL+ATPIPRTL +A++G RD S+++TPP R+AV T+V + AI E Sbjct: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIE 324 + RGGQV+Y+ ++ I + L + +P+ +AI HG+ R +E Sbjct: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/51 (45%), Positives = 32/51 (62%) Frame = +1 Query: 307 RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDML 459 RL AI DLG GF +A D+ IRG G + GE+QSG + +G L+ ++L Sbjct: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979
>MFD_RICPR (O05955) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1120 Score = 89.0 bits (219), Expect = 6e-18 Identities = 47/107 (43%), Positives = 68/107 (63%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 K+S VL +SATPIPRTL +++TG ++ S+++TPP R+ V T V F A+ E Sbjct: 726 KSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRDALLRE 785 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEE 327 RGG+ FYV PRIK ++D+ + LK +P++ IAHGK I+E Sbjct: 786 HFRGGRSFYVAPRIKDMEDIEKQLKQIVPELSYKIAHGKMTPSKIDE 832 Score = 54.3 bits (129), Expect = 2e-07 Identities = 24/56 (42%), Positives = 35/56 (62%) Frame = +1 Query: 292 AHGKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDML 459 +H RL I+ LG GF +A D +RGFG++ GE+QSG + VG +L+ +ML Sbjct: 904 SHSLRRLEIIQNSCSLGSGFTIASHDADLRGFGNLIGEEQSGQIKEVGTELYQEML 959
>MFD_MYCTU (P64326) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 87.4 bits (215), Expect = 2e-17 Identities = 42/99 (42%), Positives = 63/99 (63%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 + +DVLT+SATPIPRTL ++L G R+ S + TPP ER V TYV + +A++ E Sbjct: 794 RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRE 853 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 L R GQ FYV R+ +ID +++ +P+ + +AHG+ Sbjct: 854 LLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/59 (47%), Positives = 38/59 (64%) Frame = +1 Query: 271 PDVPMAIAHGKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLF 447 P VP+ DRL I ++++LG G VA KD+ IRG G++ G +QSG VA VG DL+ Sbjct: 966 PQVPLTET-AYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLY 1023
>MFD_MYCBO (P64327) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1234 Score = 87.4 bits (215), Expect = 2e-17 Identities = 42/99 (42%), Positives = 63/99 (63%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 + +DVLT+SATPIPRTL ++L G R+ S + TPP ER V TYV + +A++ E Sbjct: 794 RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRE 853 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 L R GQ FYV R+ +ID +++ +P+ + +AHG+ Sbjct: 854 LLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQ 892 Score = 53.5 bits (127), Expect = 3e-07 Identities = 28/59 (47%), Positives = 38/59 (64%) Frame = +1 Query: 271 PDVPMAIAHGKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLF 447 P VP+ DRL I ++++LG G VA KD+ IRG G++ G +QSG VA VG DL+ Sbjct: 966 PQVPLTET-AYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLY 1023
>MFD_BUCBP (Q89AK2) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 697 Score = 87.0 bits (214), Expect = 2e-17 Identities = 46/104 (44%), Positives = 65/104 (62%) Frame = +1 Query: 13 SIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELK 192 +IDVLTL+ATPIPRTL +A G RD S+++TPP +R+ V T+V FS AI E+ Sbjct: 301 NIDVLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREIL 360 Query: 193 RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIE 324 RGGQV+Y+ + I+ LK +P+ + I HG+ R +E Sbjct: 361 RGGQVYYIYNNVNKIERKKIELKKLVPEANIRIGHGQLRSTDLE 404 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/71 (32%), Positives = 36/71 (50%) Frame = +1 Query: 256 LKDSLPDVPMAIAHGKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVG 435 L SL D+ + K R+ AI G F +A +D+ IRG G + G QSG + +G Sbjct: 468 LVPSLKDIK---SDAKKRIDAITSIESFGSCFELANRDLEIRGIGEILGNNQSGHITKIG 524 Query: 436 VDLFFDMLFDS 468 L+ +L ++ Sbjct: 525 FSLYMKLLMNA 535
>MFD_BUCAI (P57381) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 812 Score = 86.7 bits (213), Expect = 3e-17 Identities = 38/98 (38%), Positives = 67/98 (68%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLEL 189 ++ID+LTL+ATPIPRTL +A+TG +D S+++ PP +R+A+ T++ +S I E+ Sbjct: 412 SNIDILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQEYSPILIRKTILREI 471 Query: 190 KRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 RGGQV+Y+ +++ I ++ + L +P+ + I HG+ Sbjct: 472 SRGGQVYYIYNKVQNIMNIAERLSILIPEASIKIGHGQ 509 Score = 50.1 bits (118), Expect = 3e-06 Identities = 22/53 (41%), Positives = 34/53 (64%) Frame = +1 Query: 301 KDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDML 459 K RL AI + G GF ++ +D+ IRG G + G++QSG + N+G L+ D+L Sbjct: 592 KKRLEAISSVDNFGGGFSLSNQDLEIRGVGEILGKEQSGHIKNIGFSLYMDLL 644
>MFD_HAEIN (P45128) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1146 Score = 84.7 bits (208), Expect = 1e-16 Identities = 42/106 (39%), Positives = 68/106 (64%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 +A+ID+LTL+ATPIPRTL +A+ G RD S++STPP R+++ T+V AI E Sbjct: 748 RANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILRE 807 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIE 324 + RGGQV+Y+ + +I++ + L +P+ + + HG+ R +E Sbjct: 808 ILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMRERELE 853 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/63 (36%), Positives = 36/63 (57%) Frame = +1 Query: 271 PDVPMAIAHGKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFF 450 P M + RL A+E +LG GF +A D+ IRG G + G +QSG + ++G L+ Sbjct: 919 PPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSGQIESIGFSLYM 978 Query: 451 DML 459 ++L Sbjct: 979 ELL 981
>MFD_BORBU (O51568) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1125 Score = 73.9 bits (180), Expect = 2e-13 Identities = 40/99 (40%), Positives = 57/99 (57%) Frame = +1 Query: 7 KASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 + S+D L LSATPIPR+L+++L RD S++ PP RV + Y+ FS AI+ E Sbjct: 728 RISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFSELLIKHAIESE 787 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGK 303 L R GQVF V I+ + + ++ P +AI HGK Sbjct: 788 LSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGK 826 Score = 57.4 bits (137), Expect = 2e-08 Identities = 25/52 (48%), Positives = 37/52 (71%) Frame = +1 Query: 304 DRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDML 459 +RL AI E S+LG GF +A KDM IRG G++ G +Q G++ ++G+D + ML Sbjct: 910 ERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDYYLTML 961
>MFD_HELPJ (Q9ZJ57) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 1001 Score = 71.2 bits (173), Expect = 1e-12 Identities = 39/105 (37%), Positives = 59/105 (56%) Frame = +1 Query: 13 SIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELK 192 S+ L++SATPIPRTL +AL+ + S + TPP +R T++ + E I EL+ Sbjct: 630 SVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELR 689 Query: 193 RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEE 327 R GQ+FY+ I +I V L+D +P + +AI H + EE Sbjct: 690 RNGQIFYIHNHIASISKVKTKLEDLIPKLKIAILHSQINANESEE 734 Score = 48.5 bits (114), Expect = 8e-06 Identities = 24/54 (44%), Positives = 36/54 (66%) Frame = +1 Query: 307 RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDMLFDS 468 RL A+E++S LG G +A D+ IRG G++ G+ QSG + N+G L+ ML D+ Sbjct: 811 RLLALEKNSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDA 864
>MFD_HELPY (O26066) Transcription-repair coupling factor (EC 3.6.1.-) (TRCF)| (ATP-dependent helicase mfd) Length = 999 Score = 69.7 bits (169), Expect = 4e-12 Identities = 39/105 (37%), Positives = 59/105 (56%) Frame = +1 Query: 13 SIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELK 192 S+ L++SATPIPRTL +AL+ + S + TPP +R T++ + E I EL+ Sbjct: 628 SVHFLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELR 687 Query: 193 RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEE 327 R GQ+FY+ I +I V L+D +P + +AI H + EE Sbjct: 688 RNGQIFYIHNHIASILKVKTKLEDLIPKLKIAILHSQINANESEE 732 Score = 48.9 bits (115), Expect = 6e-06 Identities = 25/54 (46%), Positives = 36/54 (66%) Frame = +1 Query: 307 RLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFDMLFDS 468 RL A+E++S LG G VA D+ IRG G++ G+ QSG + N+G L+ ML D+ Sbjct: 809 RLLALEKNSYLGSGESVAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDA 862
>RECG_AQUAE (O67837) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 792 Score = 56.6 bits (135), Expect = 3e-08 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 13/114 (11%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFS-RESALSAIKLELKRGG 201 L +SATPIPRTL L++ G D S++ PP R V T + S +E ++ ELK+G Sbjct: 514 LVMSATPIPRTLALSIYGDLDISIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGN 573 Query: 202 QVFYVVP--------RIKAIDDVLQFLKDSLPDVPMAIAHG----KDRLGAIEE 327 +V+ + P +KA + + K PD + + HG K++L +EE Sbjct: 574 KVYVIYPLIEESEKLNLKAATEEYERWKKLFPDRKVLLLHGKMPDKEKLAVMEE 627
>RECG_TREPA (P96130) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 54.7 bits (130), Expect = 1e-07 Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 9/103 (8%) Frame = +1 Query: 22 VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSR-ESALSAIKLELKRG 198 ++ +SATPIPRTL L++ G D S++ + P R V TY++ ++ E + E+++G Sbjct: 428 IIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKAEKVYEFVGNEIEKG 487 Query: 199 GQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAIAHGK 303 Q +++ PRI K++ + +LK+ +A+ H K Sbjct: 488 RQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYFARYAVAMIHSK 530
>RECG_BORBU (O51528) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 52.8 bits (125), Expect = 4e-07 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 9/105 (8%) Frame = +1 Query: 16 IDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESAL-SAIKLELK 192 +D+L +SATPIPR+ L L G + S + T P R+ + TY++ E + ++ EL Sbjct: 411 VDMLLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRKELL 470 Query: 193 RGGQVFYVVP--------RIKAIDDVLQFLKDSLPDVPMAIAHGK 303 +G QV++V P +K ++++ LK+ + + + H K Sbjct: 471 KGHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSK 515 Score = 33.1 bits (74), Expect = 0.37 Identities = 17/40 (42%), Positives = 27/40 (67%) Frame = +1 Query: 298 GKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSG 417 GK RL I+E+ D GF +A +D+ +RG G++ G +Q+G Sbjct: 595 GKFRLKTIKENLD---GFKIAEEDLRLRGPGNLFGLEQAG 631
>RECG_BACSU (O34942) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 682 Score = 50.8 bits (120), Expect = 2e-06 Identities = 48/152 (31%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Frame = +1 Query: 19 DVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTY-VSXFSRESALSAIKLELKR 195 DVL ++ATPIPRTL + + G D S++ P R + TY V + L+ ++ ELK+ Sbjct: 406 DVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQ 465 Query: 196 GGQVFYVVPRIKAID--------DVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLGQGF 351 G Q + + P I+ D DV L D I GK +G + H L Sbjct: 466 GRQAYIICPLIEESDKLDVQNAIDVYNMLSD--------IFRGKWNVGLM--HGKL---- 511 Query: 352 HVAXKDMGIRGFGSMXGE-QQSGDVANVGVDL 444 H KD +R F + + S V VGV++ Sbjct: 512 HSDEKDQVMREFSANHCQILVSTTVVEVGVNV 543 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +1 Query: 298 GKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSG 417 GK+R+ + E +D GF ++ KD+ +RG G G++QSG Sbjct: 589 GKERMRIMSETND---GFELSEKDLELRGPGDFFGKKQSG 625
>RECG_SYNY3 (Q55681) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 831 Score = 48.1 bits (113), Expect = 1e-05 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Frame = +1 Query: 22 VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXT-YVSXFSRESALSAIKLELKRG 198 VL+++ATPIPRTL L L G + S + PP R + T ++ R I+ E+ +G Sbjct: 556 VLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQG 615 Query: 199 GQVFYVVPRIK---------AIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDL 339 QV+ + P I+ A+++ + P+ + + HG RL + E+ + L Sbjct: 616 RQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHG--RLKSAEKEAAL 669 Score = 32.7 bits (73), Expect = 0.48 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 301 KDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSG 417 + RLG +E+ D GF +A D+ +RG G G +QSG Sbjct: 739 RQRLGVMEQSQD---GFFIAEMDLRLRGPGEFLGTKQSG 774
>RECG_STAES (Q8CSV3) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 682 Score = 44.7 bits (104), Expect = 1e-04 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 10/108 (9%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXT-YVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D S + P R + T + + L+ + E Sbjct: 406 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNE 465 Query: 187 LKRGGQVFYVVPRIKA---IDDV------LQFLKDSLPDVPMAIAHGK 303 LK+G Q + + P I++ ++DV + L+ + + + HGK Sbjct: 466 LKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGK 513
>RECG_STAEQ (Q5HPW4) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 682 Score = 44.7 bits (104), Expect = 1e-04 Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 10/108 (9%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXT-YVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D S + P R + T + + L+ + E Sbjct: 406 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNE 465 Query: 187 LKRGGQVFYVVPRIKA---------IDDVLQFLKDSLPDVPMAIAHGK 303 LK+G Q + + P I++ + ++ + L+ + + + HGK Sbjct: 466 LKKGRQAYVICPLIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGK 513
>RECG_STRPN (Q54900) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 671 Score = 44.7 bits (104), Expect = 1e-04 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%) Frame = +1 Query: 19 DVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXT-YVSXFSRESALSAIKLELKR 195 DVL ++ATPIPRTL + G D S++ P R + T ++ L+ ++ E+++ Sbjct: 400 DVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQK 459 Query: 196 GGQVFYVVPRIK 231 G QV+ + P I+ Sbjct: 460 GSQVYVISPLIE 471 Score = 31.2 bits (69), Expect = 1.4 Identities = 16/40 (40%), Positives = 26/40 (65%) Frame = +1 Query: 298 GKDRLGAIEEHSDLGQGFHVAXKDMGIRGFGSMXGEQQSG 417 GKDR+ + E ++ GF +A +D+ +RG G + G +QSG Sbjct: 583 GKDRMRIMTETTN---GFVLAEEDLKMRGSGEIFGTRQSG 619
>RECG_STAAW (Q8NX11) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAU (O50581) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAS (Q6G9Y6) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAR (Q6GHK8) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAN (P64325) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAM (P64324) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_STAAC (Q5HGK6) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 686 Score = 44.3 bits (103), Expect = 2e-04 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +1 Query: 10 ASIDVLTLSATPIPRTLYLALTGFRD-ASLMSTPPPERVAVXTYVSXFSRESALSAIKLE 186 A +VL ++ATPIPRTL +++ G D +S+ P + + T+ + L + E Sbjct: 410 AMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSE 469 Query: 187 LKRGGQVFYVVPRIKA 234 LK+G Q + + P I++ Sbjct: 470 LKKGRQAYVICPLIES 485
>RECG_PASMU (Q9CMB4) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 693 Score = 39.7 bits (91), Expect = 0.004 Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 10/126 (7%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTY-VSXFSRESALSAIKLE-LKRG 198 L ++ATPIPRTL + + D S++ PP R + T +S R ++ + + Sbjct: 424 LIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEK 483 Query: 199 GQVFYV--------VPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLGQGFH 354 Q ++V V +A + + + L+ LP + + + HG+ + E D+ Q F Sbjct: 484 RQAYWVCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPA---EKQDIMQAFK 540 Query: 355 VAXKDM 372 A D+ Sbjct: 541 QAEIDL 546
>RECG_ECO57 (Q8XD86) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 693 Score = 38.5 bits (88), Expect = 0.009 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 10/103 (9%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTY-VSXFSRESALSAIKLE-LKRG 198 L ++ATPIPRTL + D S++ PP R V T + R + ++ + G Sbjct: 424 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACITEG 483 Query: 199 GQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAIAHGK 303 Q ++V I +A + + LK +LP++ + + HG+ Sbjct: 484 RQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGR 526 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 334 DLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFD 453 D GF +A KD+ IRG G + G +Q+G+ DL D Sbjct: 615 DSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRD 654
>RECG_HAEIN (P43809) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 693 Score = 37.7 bits (86), Expect = 0.015 Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 10/126 (7%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSR--ESALSAIKLELKRG 198 L ++ATPIPRTL + + D S++ PP R + T V R E + + Sbjct: 424 LIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEK 483 Query: 199 GQVFYV--------VPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLGQGFH 354 Q ++V V +A + + + L +LP + + + HG+ + +E D+ F Sbjct: 484 RQAYWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMK---PQEKQDVMMRFK 540 Query: 355 VAXKDM 372 A D+ Sbjct: 541 NAELDL 546
>RECG_ECOLI (P24230) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 693 Score = 37.7 bits (86), Expect = 0.015 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESAL--SAIKLELKRG 198 L ++ATPIPRTL + D S++ PP R V T +R + + + G Sbjct: 424 LIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEG 483 Query: 199 GQVFYVVPRI--------KAIDDVLQFLKDSLPDVPMAIAHGK 303 Q ++V I +A + + LK +LP++ + + HG+ Sbjct: 484 RQAYWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGR 526 Score = 32.0 bits (71), Expect = 0.82 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = +1 Query: 334 DLGQGFHVAXKDMGIRGFGSMXGEQQSGDVANVGVDLFFD 453 D GF +A KD+ IRG G + G +Q+G+ DL D Sbjct: 615 DSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRD 654
>RECG_MYCTU (P64322) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 737 Score = 36.2 bits (82), Expect = 0.043 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Frame = +1 Query: 22 VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFS-----RESALSAIKLE 186 +L ++ATPIPRT+ L + G + S + P R + T V + A I E Sbjct: 452 LLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDRAWRRIIEE 511 Query: 187 LKRGGQVFYVVPRIKAIDD 243 G Q + V PRI DD Sbjct: 512 AAAGRQAYVVAPRIDESDD 530
>RECG_MYCBO (P64323) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 737 Score = 36.2 bits (82), Expect = 0.043 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%) Frame = +1 Query: 22 VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFS-----RESALSAIKLE 186 +L ++ATPIPRT+ L + G + S + P R + T V + A I E Sbjct: 452 LLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKDKPAWLDRAWRRIIEE 511 Query: 187 LKRGGQVFYVVPRIKAIDD 243 G Q + V PRI DD Sbjct: 512 AAAGRQAYVVAPRIDESDD 530
>RECG_MYCLE (O69460) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 743 Score = 35.4 bits (80), Expect = 0.074 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +1 Query: 22 VLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFS-----RESALSAIKLE 186 +L ++ATPIPRT+ L + G + S + P R + + V + A I E Sbjct: 452 LLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVIFVKDKPGWLDRAWQRILEE 511 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLP 273 + G Q + V PRI +D + ++S P Sbjct: 512 VAAGRQAYVVAPRIDETEDPQKGGQNSRP 540
>RECG_HELPJ (Q9ZJA1) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 623 Score = 35.0 bits (79), Expect = 0.097 Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELKRGGQ 204 L SATPIPRTL LA + F +++ P + + + + I E+ + Q Sbjct: 380 LQFSATPIPRTLALAKSAFVKTTMIREIPYPKEIETLVLHKREFKIVMEKISEEIAKNHQ 439 Query: 205 VFYVVPRIK--------AIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLG 342 V V P + ++ + F + ++ K++ IEE +LG Sbjct: 440 VIVVYPLVNKSEKIPYLSLSEGASFWQKRFKNIYTTSGQDKNKEEVIEEFRELG 493
>HEM2_MACFA (Q60HH9) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 33.5 bits (75), Expect = 0.28 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +1 Query: 151 SRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAH 297 +R AL A+ +++ G V V P + +D +++ +KD PD+P+A+ H Sbjct: 230 ARGLALRAVDRDVREGADVLMVKPGMPYLD-IVREVKDKHPDLPLAVYH 277
>RECG_HELPY (O26051) ATP-dependent DNA helicase recG (EC 3.6.1.-)| Length = 623 Score = 32.3 bits (72), Expect = 0.63 Identities = 20/74 (27%), Positives = 33/74 (44%) Frame = +1 Query: 25 LTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELKRGGQ 204 L SATPIPRTL LA + F +++ P + + + + I E+ + Q Sbjct: 380 LQFSATPIPRTLALAKSAFVKTTMIREIPYPKEIETLVLHKRDFKIVMEKISEEIAKNHQ 439 Query: 205 VFYVVPRIKAIDDV 246 V V P + + + Sbjct: 440 VIVVYPLVNESEKI 453
>HEM2_PONPY (Q5R971) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +1 Query: 151 SRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAH 297 +R AL A+ +++ G + V P + +D +++ +KD PD+P+A+ H Sbjct: 230 ARGLALRAVDRDVREGADMLMVKPGMPYLD-IVREVKDKHPDLPLAVYH 277
>HEM2_HUMAN (P13716) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 32.3 bits (72), Expect = 0.63 Identities = 15/49 (30%), Positives = 30/49 (61%) Frame = +1 Query: 151 SRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAH 297 +R AL A+ +++ G + V P + +D +++ +KD PD+P+A+ H Sbjct: 230 ARGLALRAVDRDVREGADMLMVKPGMPYLD-IVREVKDKHPDLPLAVYH 277
>HEM2_RAT (P06214) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 30.4 bits (67), Expect = 2.4 Identities = 14/47 (29%), Positives = 29/47 (61%) Frame = +1 Query: 151 SRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAI 291 +R AL A+ +++ G + V P + +D ++Q +KD P++P+A+ Sbjct: 230 ARGLALRAVARDIQEGADILMVKPGLPYLD-MVQEVKDKHPELPLAV 275
>ATP7A_MOUSE (Q64430) Copper-transporting ATPase 1 (EC 3.6.3.4) (Copper pump 1)| (Menkes disease-associated protein homolog) Length = 1491 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/105 (21%), Positives = 47/105 (44%) Frame = +1 Query: 19 DVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKLELKRG 198 D L +A P+P L T F + T P + V S + ++ +K+ ++ Sbjct: 72 DALLHNANPLP---VLTNTVFLTVTAPLTLPWDHVQ-----STLLKTKGVTGVKISPQQR 123 Query: 199 GQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHS 333 V ++P + + +++ + PD+ + + + + GA EEHS Sbjct: 124 SAVVTIIPSVVSASQIVELV----PDLSLDMGTQEKKSGACEEHS 164
>CNTP4_HUMAN (Q9C0A0) Contactin-associated protein-like 4 precursor (Cell| recognition molecule Caspr4) Length = 1308 Score = 29.6 bits (65), Expect = 4.1 Identities = 17/47 (36%), Positives = 18/47 (38%) Frame = +3 Query: 255 SQGLSSRCTDGYCSWKG*TWSY*RAFGSWSRFPCRXEGYGY*GIWKH 395 S G+S RC YC G SWS F C GY G H Sbjct: 546 SCGISDRCLPNYCEHGG------ECSQSWSTFHCNCTNTGYRGATCH 586
>PRIA_THEMA (Q9WY22) Primosomal protein N' (EC 3.6.1.-) (ATP-dependent helicase| priA) (Replication factor Y) Length = 736 Score = 29.3 bits (64), Expect = 5.3 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +1 Query: 193 RGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAH 297 R G V ++VP + + L LK + PD+ + I H Sbjct: 262 RKGTVLFLVPEVSVLTHTLSRLKGAFPDLKIGIYH 296
>CNTP1_MOUSE (O54991) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (Paranodin) (NCP1) (MHDNIV) Length = 1385 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +3 Query: 261 GLSSRCTDGYCSWKG*TWSY*RAFGSWSRFPCRXEGYGY*GIWKH 395 G++ RC+ C G R + SW F C E GY G+ H Sbjct: 540 GITDRCSPNMCEHDG------RCYQSWDDFICYCELTGYKGVTCH 578
>CNTP1_RAT (P97846) Contactin-associated protein 1 precursor (Caspr) (Caspr1)| (Neurexin 4) (Neurexin IV) (p190) (Paranodin) Length = 1381 Score = 29.3 bits (64), Expect = 5.3 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = +3 Query: 261 GLSSRCTDGYCSWKG*TWSY*RAFGSWSRFPCRXEGYGY*GIWKH 395 G++ RC+ C G R + SW F C E GY G+ H Sbjct: 540 GITDRCSPNMCEHDG------RCYQSWDDFICYCELTGYKGVTCH 578
>CBIO6_METAC (Q8TQ05) Putative cobalt import ATP-binding protein cbiO 6| Length = 614 Score = 29.3 bits (64), Expect = 5.3 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +1 Query: 103 TPPPERVAVXTYVSXFSRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDV 279 T P R+ TY +S +ALS + LELK+G V P +++ L +P+V Sbjct: 7 TSPQVRLEKITYNYPYSDAAALSDVNLELKKGEFVLLAGPSGCGKSTLVRCLNRLVPEV 65
>ACKA_PHOLL (Q7N2I1) Acetate kinase (EC 2.7.2.1) (Acetokinase)| Length = 400 Score = 29.3 bits (64), Expect = 5.3 Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = +1 Query: 166 LSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLGQ 345 ++AI + GG+ F I D+V+Q +KD++P P+ H L IEE + Sbjct: 85 IAAIGHRIVHGGEKFTASVTIN--DEVIQGIKDAVPFAPL---HNPAHLIGIEEAK---K 136 Query: 346 GF-HVAXKDMGI 378 GF H+A K++ + Sbjct: 137 GFPHLADKNVAV 148
>UBP5_HUMAN (P45974) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 28.9 bits (63), Expect = 6.9 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Frame = +1 Query: 73 TGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKL---ELKRGGQVFYVVPRIKAIDD 243 +G S + PPPE FSR+ AL A++ L+R A+D Sbjct: 711 SGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLER------------AVDW 758 Query: 244 VLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLG 342 + + D + M I+ G+ +I E +G Sbjct: 759 IFSHIDDLDAEAAMDISEGRSAADSISESVPVG 791
>PP2BC_MOUSE (P48455) Serine/threonine-protein phosphatase 2B catalytic subunit| gamma isoform (EC 3.1.3.16) (Calmodulin-dependent calcineurin A subunit gamma isoform) (Calcineurin, testis-specific catalytic subunit) (CAM-PRP catalytic subunit) Length = 513 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -1 Query: 119 LSGGGVDIKLASRKPVKARYRVRGMGVADRVRTSIEA 9 LSGG I+ A ++ + R +RG +A R+R+ EA Sbjct: 430 LSGGKQTIETAKQEAAEEREAIRGFTIAHRIRSFEEA 466
>HEM2_MOUSE (P10518) Delta-aminolevulinic acid dehydratase (EC 4.2.1.24)| (Porphobilinogen synthase) (ALADH) Length = 330 Score = 28.5 bits (62), Expect = 9.1 Identities = 14/47 (29%), Positives = 28/47 (59%) Frame = +1 Query: 151 SRESALSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAI 291 +R AL A+ +++ G + V P + +D V + +KD P++P+A+ Sbjct: 230 ARGLALRAVARDIQEGADMLMVKPGLPYLDMVRE-VKDKHPELPLAV 275
>RFA1_PONPY (Q5R7Q4) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (p70) Length = 616 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -1 Query: 194 RFNSNLIADRALSLLNXDT*VXTATLSGGGVDIKLASRKPVKARYRVRGMGVAD 33 R N+ +A R + L++ V TATL G D SR+PV A ++G V+D Sbjct: 335 RSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLA---IKGARVSD 385
>RFA1_HUMAN (P27694) Replication protein A 70 kDa DNA-binding subunit (RP-A)| (RF-A) (Replication factor-A protein 1) (Single-stranded DNA-binding protein) (p70) Length = 616 Score = 28.5 bits (62), Expect = 9.1 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -1 Query: 194 RFNSNLIADRALSLLNXDT*VXTATLSGGGVDIKLASRKPVKARYRVRGMGVAD 33 R N+ +A R + L++ V TATL G D SR+PV A ++G V+D Sbjct: 335 RSNNREVAKRNIYLMDTSGKVVTATLWGEDADKFDGSRQPVLA---IKGARVSD 385
>PCXA_SYNY3 (P75028) Proton extrusion protein pcxA| Length = 440 Score = 28.5 bits (62), Expect = 9.1 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%) Frame = +1 Query: 187 LKRGGQVFYVVPRIKAIDDVLQFLKDSLPDV--PMAIAHG 300 +K+ Q YV+ +++ IDD+LQ LP V P IA+G Sbjct: 94 VKQDPQTEYVLNQLQFIDDILQRYDGELPQVSPPKQIANG 133
>UBP5_MOUSE (P56399) Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15)| (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (Isopeptidase T) Length = 858 Score = 28.5 bits (62), Expect = 9.1 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 3/93 (3%) Frame = +1 Query: 73 TGFRDASLMSTPPPERVAVXTYVSXFSRESALSAIKL---ELKRGGQVFYVVPRIKAIDD 243 +G S + PPPE FSR+ AL A++ L+R A+D Sbjct: 711 SGPGSTSAAADPPPEDCVTTIVSMGFSRDQALKALRATNNSLER------------AVDW 758 Query: 244 VLQFLKDSLPDVPMAIAHGKDRLGAIEEHSDLG 342 + + D + M I+ G+ +I E +G Sbjct: 759 IFSHIDDLDAEAAMDISEGRSAAESISESVPVG 791
>ACKA_YERPS (Q668Z0) Acetate kinase (EC 2.7.2.1) (Acetokinase)| Length = 400 Score = 28.5 bits (62), Expect = 9.1 Identities = 15/40 (37%), Positives = 23/40 (57%) Frame = +1 Query: 166 LSAIKLELKRGGQVFYVVPRIKAIDDVLQFLKDSLPDVPM 285 L+AI + GG+ F + DDV+Q +KDS+P P+ Sbjct: 85 LTAIGHRIVHGGEKF--TSSVIVTDDVIQGIKDSIPFAPL 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,614,408 Number of Sequences: 219361 Number of extensions: 1299855 Number of successful extensions: 3402 Number of sequences better than 10.0: 56 Number of HSP's better than 10.0 without gapping: 3290 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3397 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
