| Clone Name | bags19e09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044D20, full insert sequence Length = 3224 Score = 299 bits (151), Expect = 4e-78 Identities = 260/297 (87%) Strand = Plus / Plus Query: 7 aaggcttctattgatgttcttaccctgtccgcaacacccattccgcgaactctgtatctt 66 |||||||||||||||||||| || ||||| |||||||||||||| || ||| ||||||| Sbjct: 1370 aaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctc 1429 Query: 67 gctttaaccggtttccgtgatgcaagtttaatgtctacaccacctccggaaagagttgct 126 || || || |||||||||||||| |||||||||||||| || ||||| |||||||||||| Sbjct: 1430 gcgttgacaggtttccgtgatgccagtttaatgtctacgccgcctccagaaagagttgct 1489 Query: 127 gtcangacctatgtgtcancatttagtagagaaagtgctctatcagctatcaaattggag 186 || | |||||| |||||| |||||| | |||||| |||||||||||||| || || ||| Sbjct: 1490 gtaaggacctacgtgtcaggatttagcaaagaaagggctctatcagctattaagtttgag 1549 Query: 187 ttgaagcgtggaggtcaagttttctatgttgttcctcgaataaaagccatagacgatgta 246 ||| ||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct: 1550 ttggcacgtggtggtcaagttttctatgttgttcctcgaataaaagcaatagatgatgtg 1609 Query: 247 ttgcaatttctcaaggactctcttccagatgtaccgatggctattgctcatggaaag 303 |||||||||||||||| |||||||||||||| || |||||| |||||||||||||| Sbjct: 1610 ctgcaatttctcaaggattctcttccagatgttccaatggctgttgctcatggaaag 1666 Score = 242 bits (122), Expect = 9e-61 Identities = 156/168 (92%) Strand = Plus / Plus Query: 303 ggatagacttggagctattgaagagcattcggatcttggtcaaggtttccatgtcgcana 362 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | Sbjct: 1915 ggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcaga 1974 Query: 363 gaaggatatgggtattaggggatttggaagcatgtntggtgagcaacaatctggagatgt 422 ||||||||||||||| ||||| || |||||| ||| |||||||||||||||||||||||| Sbjct: 1975 gaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatgt 2034 Query: 423 tgcaaatgttggcgtcgatctgttctttgatatgctttttgatagctt 470 ||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 2035 tgcaaatgttggcattgatctattctttgatatgctttttgatagctt 2082
>gb|AC133248.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0080I08, complete sequence Length = 197156 Score = 244 bits (123), Expect = 2e-61 Identities = 157/169 (92%) Strand = Plus / Minus Query: 302 aggatagacttggagctattgaagagcattcggatcttggtcaaggtttccatgtcgcan 361 |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 22857 aggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcag 22798 Query: 362 agaaggatatgggtattaggggatttggaagcatgtntggtgagcaacaatctggagatg 421 |||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||| Sbjct: 22797 agaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatg 22738 Query: 422 ttgcaaatgttggcgtcgatctgttctttgatatgctttttgatagctt 470 |||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 22737 ttgcaaatgttggcattgatctattctttgatatgctttttgatagctt 22689 Score = 143 bits (72), Expect = 6e-31 Identities = 124/142 (87%) Strand = Plus / Minus Query: 91 agtttaatgtctacaccacctccggaaagagttgctgtcangacctatgtgtcancattt 150 |||||||||||||| || ||||| |||||||||||||| | |||||| |||||| |||| Sbjct: 25032 agtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggattt 24973 Query: 151 agtagagaaagtgctctatcagctatcaaattggagttgaagcgtggaggtcaagttttc 210 || | |||||| |||||||||||||| || || |||||| ||||| |||||||||||| Sbjct: 24972 agcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttc 24913 Query: 211 tatgttgttcctcgaataaaag 232 |||||||||||||||||||||| Sbjct: 24912 tatgttgttcctcgaataaaag 24891 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 7 aaggcttctattgatgttcttaccctgtccgcaacacccattccgcgaactctgtatctt 66 |||||||||||||||||||| || ||||| |||||||||||||| || ||| ||||||| Sbjct: 25508 aaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctc 25449 Query: 67 gctttaaccggtttccgtgatgc 89 || || || |||||||||||||| Sbjct: 25448 gcgttgacaggtttccgtgatgc 25426 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 235 atagacgatgtattgcaatttctcaaggactctcttccagatgtaccgatggctattgct 294 ||||| ||||| |||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 24608 atagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgct 24549 Query: 295 catggaaagg 304 |||||||||| Sbjct: 24548 catggaaagg 24539
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence Length = 178233 Score = 244 bits (123), Expect = 2e-61 Identities = 157/169 (92%) Strand = Plus / Minus Query: 302 aggatagacttggagctattgaagagcattcggatcttggtcaaggtttccatgtcgcan 361 |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 172642 aggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcag 172583 Query: 362 agaaggatatgggtattaggggatttggaagcatgtntggtgagcaacaatctggagatg 421 |||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||| Sbjct: 172582 agaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatg 172523 Query: 422 ttgcaaatgttggcgtcgatctgttctttgatatgctttttgatagctt 470 |||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 172522 ttgcaaatgttggcattgatctattctttgatatgctttttgatagctt 172474 Score = 143 bits (72), Expect = 6e-31 Identities = 124/142 (87%) Strand = Plus / Minus Query: 91 agtttaatgtctacaccacctccggaaagagttgctgtcangacctatgtgtcancattt 150 |||||||||||||| || ||||| |||||||||||||| | |||||| |||||| |||| Sbjct: 174817 agtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggattt 174758 Query: 151 agtagagaaagtgctctatcagctatcaaattggagttgaagcgtggaggtcaagttttc 210 || | |||||| |||||||||||||| || || |||||| ||||| |||||||||||| Sbjct: 174757 agcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttc 174698 Query: 211 tatgttgttcctcgaataaaag 232 |||||||||||||||||||||| Sbjct: 174697 tatgttgttcctcgaataaaag 174676 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 7 aaggcttctattgatgttcttaccctgtccgcaacacccattccgcgaactctgtatctt 66 |||||||||||||||||||| || ||||| |||||||||||||| || ||| ||||||| Sbjct: 175293 aaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctc 175234 Query: 67 gctttaaccggtttccgtgatgc 89 || || || |||||||||||||| Sbjct: 175233 gcgttgacaggtttccgtgatgc 175211 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 235 atagacgatgtattgcaatttctcaaggactctcttccagatgtaccgatggctattgct 294 ||||| ||||| |||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 174393 atagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgct 174334 Query: 295 catggaaagg 304 |||||||||| Sbjct: 174333 catggaaagg 174324
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 244 bits (123), Expect = 2e-61 Identities = 157/169 (92%) Strand = Plus / Minus Query: 302 aggatagacttggagctattgaagagcattcggatcttggtcaaggtttccatgtcgcan 361 |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 18758262 aggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcag 18758203 Query: 362 agaaggatatgggtattaggggatttggaagcatgtntggtgagcaacaatctggagatg 421 |||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||| Sbjct: 18758202 agaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatg 18758143 Query: 422 ttgcaaatgttggcgtcgatctgttctttgatatgctttttgatagctt 470 |||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 18758142 ttgcaaatgttggcattgatctattctttgatatgctttttgatagctt 18758094 Score = 143 bits (72), Expect = 6e-31 Identities = 124/142 (87%) Strand = Plus / Minus Query: 91 agtttaatgtctacaccacctccggaaagagttgctgtcangacctatgtgtcancattt 150 |||||||||||||| || ||||| |||||||||||||| | |||||| |||||| |||| Sbjct: 18760437 agtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggattt 18760378 Query: 151 agtagagaaagtgctctatcagctatcaaattggagttgaagcgtggaggtcaagttttc 210 || | |||||| |||||||||||||| || || |||||| ||||| |||||||||||| Sbjct: 18760377 agcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttc 18760318 Query: 211 tatgttgttcctcgaataaaag 232 |||||||||||||||||||||| Sbjct: 18760317 tatgttgttcctcgaataaaag 18760296 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 7 aaggcttctattgatgttcttaccctgtccgcaacacccattccgcgaactctgtatctt 66 |||||||||||||||||||| || ||||| |||||||||||||| || ||| ||||||| Sbjct: 18760913 aaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctc 18760854 Query: 67 gctttaaccggtttccgtgatgc 89 || || || |||||||||||||| Sbjct: 18760853 gcgttgacaggtttccgtgatgc 18760831 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 235 atagacgatgtattgcaatttctcaaggactctcttccagatgtaccgatggctattgct 294 ||||| ||||| |||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 18760013 atagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgct 18759954 Query: 295 catggaaagg 304 |||||||||| Sbjct: 18759953 catggaaagg 18759944
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 244 bits (123), Expect = 2e-61 Identities = 157/169 (92%) Strand = Plus / Minus Query: 302 aggatagacttggagctattgaagagcattcggatcttggtcaaggtttccatgtcgcan 361 |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct: 18917663 aggatagacttggagctattgaggagcattcagatcttggtcaaggtttccatgttgcag 18917604 Query: 362 agaaggatatgggtattaggggatttggaagcatgtntggtgagcaacaatctggagatg 421 |||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||| Sbjct: 18917603 agaaggatatgggtatcagggggttcggaagcttgtttggtgagcaacaatctggagatg 18917544 Query: 422 ttgcaaatgttggcgtcgatctgttctttgatatgctttttgatagctt 470 |||||||||||||| | ||||| |||||||||||||||||||||||||| Sbjct: 18917543 ttgcaaatgttggcattgatctattctttgatatgctttttgatagctt 18917495 Score = 143 bits (72), Expect = 6e-31 Identities = 124/142 (87%) Strand = Plus / Minus Query: 91 agtttaatgtctacaccacctccggaaagagttgctgtcangacctatgtgtcancattt 150 |||||||||||||| || ||||| |||||||||||||| | |||||| |||||| |||| Sbjct: 18919838 agtttaatgtctacgccgcctccagaaagagttgctgtaaggacctacgtgtcaggattt 18919779 Query: 151 agtagagaaagtgctctatcagctatcaaattggagttgaagcgtggaggtcaagttttc 210 || | |||||| |||||||||||||| || || |||||| ||||| |||||||||||| Sbjct: 18919778 agcaaagaaagggctctatcagctattaagtttgagttggcacgtggtggtcaagttttc 18919719 Query: 211 tatgttgttcctcgaataaaag 232 |||||||||||||||||||||| Sbjct: 18919718 tatgttgttcctcgaataaaag 18919697 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Minus Query: 7 aaggcttctattgatgttcttaccctgtccgcaacacccattccgcgaactctgtatctt 66 |||||||||||||||||||| || ||||| |||||||||||||| || ||| ||||||| Sbjct: 18920314 aaggcttctattgatgttctcacactgtctgcaacacccattccacgtactttgtatctc 18920255 Query: 67 gctttaaccggtttccgtgatgc 89 || || || |||||||||||||| Sbjct: 18920254 gcgttgacaggtttccgtgatgc 18920232 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 235 atagacgatgtattgcaatttctcaaggactctcttccagatgtaccgatggctattgct 294 ||||| ||||| |||||||||||||||| |||||||||||||| || |||||| ||||| Sbjct: 18919414 atagatgatgtgctgcaatttctcaaggattctcttccagatgttccaatggctgttgct 18919355 Query: 295 catggaaagg 304 |||||||||| Sbjct: 18919354 catggaaagg 18919345
>ref|NM_111072.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / transcription factor AT3G02060 mRNA, complete cds Length = 2915 Score = 52.0 bits (26), Expect = 0.002 Identities = 102/128 (79%) Strand = Plus / Plus Query: 337 cttggtcaaggtttccatgtcgcanagaaggatatgggtattaggggatttggaagcatg 396 ||||| ||||| ||||| | ||| |||||||||||||||| || || ||||| | || Sbjct: 1877 cttggacaaggcttccaacttgcagagaaggatatgggtataagaggttttgggacaatc 1936 Query: 397 tntggtgagcaacaatctggagatgttgcaaatgttggcgtcgatctgttctttgatatg 456 | ||| || ||||| | || ||||||| |||||| || ||||||| |||||||| ||| Sbjct: 1937 tttggagaacaacagacgggggatgttggaaatgtcggtatcgatctcttctttgaaatg 1996 Query: 457 ctttttga 464 |||||||| Sbjct: 1997 ctttttga 2004 Score = 44.1 bits (22), Expect = 0.41 Identities = 79/98 (80%) Strand = Plus / Plus Query: 19 gatgttcttaccctgtccgcaacacccattccgcgaactctgtatcttgctttaaccggt 78 ||||| ||||| |||||||||||||||| || | || ||||| | ||||| || || Sbjct: 1310 gatgtgcttacattgtccgcaacacccataccaaggacactgtacttagctttgactgga 1369 Query: 79 ttccgtgatgcaagtttaatgtctacaccacctccgga 116 ||||| ||||| |||||||| || ||||| |||||||| Sbjct: 1370 ttccgggatgctagtttaatctccacaccgcctccgga 1407
>gb|AC011664.10|ATAC011664 Arabidopsis thaliana chromosome III BAC F1C9 genomic sequence, complete sequence Length = 103960 Score = 52.0 bits (26), Expect = 0.002 Identities = 102/128 (79%) Strand = Plus / Minus Query: 337 cttggtcaaggtttccatgtcgcanagaaggatatgggtattaggggatttggaagcatg 396 ||||| ||||| ||||| | ||| |||||||||||||||| || || ||||| | || Sbjct: 52088 cttggacaaggcttccaacttgcagagaaggatatgggtataagaggttttgggacaatc 52029 Query: 397 tntggtgagcaacaatctggagatgttgcaaatgttggcgtcgatctgttctttgatatg 456 | ||| || ||||| | || ||||||| |||||| || ||||||| |||||||| ||| Sbjct: 52028 tttggagaacaacagacgggggatgttggaaatgtcggtatcgatctcttctttgaaatg 51969 Query: 457 ctttttga 464 |||||||| Sbjct: 51968 ctttttga 51961
>gb|AF370520.1|AF370520 Arabidopsis thaliana putative helicase (F1C9.16) mRNA, complete cds Length = 2915 Score = 52.0 bits (26), Expect = 0.002 Identities = 102/128 (79%) Strand = Plus / Plus Query: 337 cttggtcaaggtttccatgtcgcanagaaggatatgggtattaggggatttggaagcatg 396 ||||| ||||| ||||| | ||| |||||||||||||||| || || ||||| | || Sbjct: 1877 cttggacaaggcttccaacttgcagagaaggatatgggtataagaggttttgggacaatc 1936 Query: 397 tntggtgagcaacaatctggagatgttgcaaatgttggcgtcgatctgttctttgatatg 456 | ||| || ||||| | || ||||||| |||||| || ||||||| |||||||| ||| Sbjct: 1937 tttggagaacaacagacgggggatgttggaaatgtcggtatcgatctcttctttgaaatg 1996 Query: 457 ctttttga 464 |||||||| Sbjct: 1997 ctttttga 2004 Score = 44.1 bits (22), Expect = 0.41 Identities = 79/98 (80%) Strand = Plus / Plus Query: 19 gatgttcttaccctgtccgcaacacccattccgcgaactctgtatcttgctttaaccggt 78 ||||| ||||| |||||||||||||||| || | || ||||| | ||||| || || Sbjct: 1310 gatgtgcttacattgtccgcaacacccataccaaggacactgtacttagctttgactgga 1369 Query: 79 ttccgtgatgcaagtttaatgtctacaccacctccgga 116 ||||| ||||| |||||||| || ||||| |||||||| Sbjct: 1370 ttccgggatgctagtttaatctccacaccgcctccgga 1407
>gb|BT002188.1| Arabidopsis thaliana putative helicase (At3g02060) mRNA, complete cds Length = 2496 Score = 52.0 bits (26), Expect = 0.002 Identities = 102/128 (79%) Strand = Plus / Plus Query: 337 cttggtcaaggtttccatgtcgcanagaaggatatgggtattaggggatttggaagcatg 396 ||||| ||||| ||||| | ||| |||||||||||||||| || || ||||| | || Sbjct: 1825 cttggacaaggcttccaacttgcagagaaggatatgggtataagaggttttgggacaatc 1884 Query: 397 tntggtgagcaacaatctggagatgttgcaaatgttggcgtcgatctgttctttgatatg 456 | ||| || ||||| | || ||||||| |||||| || ||||||| |||||||| ||| Sbjct: 1885 tttggagaacaacagacgggggatgttggaaatgtcggtatcgatctcttctttgaaatg 1944 Query: 457 ctttttga 464 |||||||| Sbjct: 1945 ctttttga 1952 Score = 44.1 bits (22), Expect = 0.41 Identities = 79/98 (80%) Strand = Plus / Plus Query: 19 gatgttcttaccctgtccgcaacacccattccgcgaactctgtatcttgctttaaccggt 78 ||||| ||||| |||||||||||||||| || | || ||||| | ||||| || || Sbjct: 1258 gatgtgcttacattgtccgcaacacccataccaaggacactgtacttagctttgactgga 1317 Query: 79 ttccgtgatgcaagtttaatgtctacaccacctccgga 116 ||||| ||||| |||||||| || ||||| |||||||| Sbjct: 1318 ttccgggatgctagtttaatctccacaccgcctccgga 1355
>emb|BX293996.16| Zebrafish DNA sequence from clone DKEY-38J20 in linkage group 1, complete sequence Length = 237723 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 gagatgttgcaaatgttggcg 436 ||||||||||||||||||||| Sbjct: 204781 gagatgttgcaaatgttggcg 204761
>emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 in linkage group 24, complete sequence Length = 168886 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 412 tctggagatgttgcaaatgtt 432 ||||||||||||||||||||| Sbjct: 108896 tctggagatgttgcaaatgtt 108916
>emb|AL807739.6| Zebrafish DNA sequence from clone CH211-220F6 Contains a novel gene for a protein similar to dynein heavy chain proteins and three CpG islands, complete sequence Length = 188716 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 gagatgttgcaaatgttggcg 436 ||||||||||||||||||||| Sbjct: 81623 gagatgttgcaaatgttggcg 81603
>emb|CR388092.29| Zebrafish DNA sequence from clone DKEY-285J13 in linkage group 1, complete sequence Length = 161368 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 416 gagatgttgcaaatgttggcg 436 ||||||||||||||||||||| Sbjct: 117644 gagatgttgcaaatgttggcg 117624
>ref|NG_000008.6| Homo sapiens cytochrome P450, family 2, subfamily A (CYP2A) on chromosome 19 Length = 413528 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gatgtattgcaatttctcaa 260 |||||||||||||||||||| Sbjct: 314037 gatgtattgcaatttctcaa 314018
>ref|XM_677326.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9149.2), mRNA Length = 4428 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 431 ttggcgtcgatctgttctttgata 454 ||||||| |||||||||||||||| Sbjct: 1289 ttggcgtggatctgttctttgata 1266
>gb|AC165352.2| Mus musculus BAC clone RP23-205C7 from chromosome 15, complete sequence Length = 202977 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 caagtttaatgtctacaccacctc 112 ||||| |||||||||||||||||| Sbjct: 45313 caagtctaatgtctacaccacctc 45290
>gb|AC101886.16| Mus musculus chromosome 15, clone RP23-413E14, complete sequence Length = 233347 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 caagtttaatgtctacaccacctc 112 ||||| |||||||||||||||||| Sbjct: 34521 caagtctaatgtctacaccacctc 34544
>gb|AC131080.13| Mus musculus chromosome 16, clone RP23-438H16, complete sequence Length = 192584 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 440 atctgttctttgatatgctttttgatag 467 ||||||||||||| |||||||| ||||| Sbjct: 69030 atctgttctttgaaatgcttttcgatag 69003
>emb|CR381607.8| Zebrafish DNA sequence from clone CH211-125I6 in linkage group 7, complete sequence Length = 94930 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 404 agcaacaatctggagatgtt 423 |||||||||||||||||||| Sbjct: 67653 agcaacaatctggagatgtt 67672
>emb|AL136094.13| Human DNA sequence from clone RP3-527B10 on chromosome 6q25.1-25.3 Contains a high mobility group (nonhistone chromosomal) protein 4 (HMG4) pseudogene, complete sequence Length = 156667 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 254 ttctcaaggactctcttccagatg 277 |||||| ||||||||||||||||| Sbjct: 75440 ttctcagggactctcttccagatg 75463
>emb|AL121834.20|HSJ509I19 Human DNA sequence from clone RP3-509I19 on chromosome 6q23.1-24.1 Contains a novel gene (includes DKFZP586D0623), the gene for a novel protein similar to mouse f-box only protein 16 (Fbxo16) (Fbx16), a novel 7 transmembrane receptor (rhodopsin family) pseudogene similar to CCRL1, a novel gene, a suppressor of mif two 3 homolog 2 (yeast) (SMT3H2) pseudogene, the REPS1 gene for RALBP1 associated Eps domain containing 1 and two CpG islands, complete sequence Length = 178159 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aaggatagacttggagctat 320 |||||||||||||||||||| Sbjct: 107931 aaggatagacttggagctat 107912
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 215 ttgttcctcgaataaaagccatagacgatgta 246 |||||||||||||||||| ||||| |||||| Sbjct: 367218 ttgttcctcgaataaaaggaatagaagatgta 367249
>gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone mth2-193p1, complete sequence Length = 120579 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 caaaggcttctattgatgtt 24 |||||||||||||||||||| Sbjct: 53454 caaaggcttctattgatgtt 53473
>gb|AC008962.9| Homo sapiens chromosome 19 clone CTD-2356P16, complete sequence Length = 154169 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gatgtattgcaatttctcaa 260 |||||||||||||||||||| Sbjct: 90293 gatgtattgcaatttctcaa 90274
>gb|AC011741.9| Homo sapiens BAC clone RP11-113E4 from 2, complete sequence Length = 141418 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 323 aagagcattcggatcttggtcaag 346 ||||||||| |||||||||||||| Sbjct: 115884 aagagcattaggatcttggtcaag 115907
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ggtcaagttttctatgttgt 218 |||||||||||||||||||| Sbjct: 975449 ggtcaagttttctatgttgt 975430
>emb|CR735107.13| Zebrafish DNA sequence from clone CH211-127B16 in linkage group 12, complete sequence Length = 183614 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 tggagatgttgcaaatgttg 433 |||||||||||||||||||| Sbjct: 116166 tggagatgttgcaaatgttg 116185
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 cttctattgatgttcttacc 30 |||||||||||||||||||| Sbjct: 85200 cttctattgatgttcttacc 85181
>dbj|AP004517.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT14B06, TM0045, complete sequence Length = 113139 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 365 aggatatgggtattaggggatttg 388 ||||||| |||||||||||||||| Sbjct: 82886 aggatattggtattaggggatttg 82863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,147,909 Number of Sequences: 3902068 Number of extensions: 4147909 Number of successful extensions: 55917 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55778 Number of HSP's gapped (non-prelim): 135 length of query: 470 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 448 effective length of database: 17,147,199,772 effective search space: 7681945497856 effective search space used: 7681945497856 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)