ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19e05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 25552689 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 25552630 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 25552629 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 25552570 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 25552569 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 25552510 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 25552509 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 25552462 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Minus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 25553271 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 25553212 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 25553211 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 25553155 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 25553154 tcaagcatcctaaggacgcccaagagc 25553128
>dbj|AK101826.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068B03, full insert sequence Length = 1481 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Plus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 632 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 691 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 692 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 751 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 752 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 811 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 812 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 859 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 367 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 426 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 427 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 483 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 484 tcaagcatcctaaggacgcccaagagc 510
>dbj|AK072382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075D08, full insert sequence Length = 2374 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Plus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 1518 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 1577 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 1578 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 1637 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 1638 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 1697 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 1698 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 1745 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 1253 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 1312 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 1313 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 1369 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 1370 tcaagcatcctaaggacgcccaagagc 1396
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 25480865 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 25480806 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 25480805 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 25480746 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 25480745 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 25480686 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 25480685 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 25480638 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Minus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 25481447 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 25481388 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 25481387 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 25481331 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 25481330 tcaagcatcctaaggacgcccaagagc 25481304
>emb|AL928781.4|CNS08CCB Oryza sativa chromosome 12, . BAC OSJNBa0070E09 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144084 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Minus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 122071 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 122012 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 122011 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 121952 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 121951 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 121892 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 121891 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 121844 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Minus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 122653 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 122594 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 122593 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 122537 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 122536 tcaagcatcctaaggacgcccaagagc 122510
>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127003 Score = 133 bits (67), Expect = 6e-28 Identities = 188/228 (82%), Gaps = 3/228 (1%) Strand = Plus / Plus Query: 270 gaagagtatccctcccgctgtcgacatacgaaacgcccatcaagcgcagcgtcagcattc 329 |||||| ||| ||||||||||| ||||| ||||| |||| |||||||||| ||||||||| Sbjct: 121029 gaagagcatcactcccgctgtcaacatatgaaacacccaccaagcgcagcatcagcattc 121088 Query: 330 tggaccagctaggctcccctgatgtttccatgaacgcgcctcggattgacaggatcgcag 389 |||| || |||| ||||||||| || || |||| || ||||| || ||||| || || | Sbjct: 121089 tggaacaactagactcccctgacgtctctgtgaatgcccctcgaatcgacagaattgcgg 121148 Query: 390 agtttccactggcttcatcagaggaccccttccactccatcc---acaagctctcttccg 446 | || |||||||| || || ||||||||||| | | |||||| ||||||||||| | | Sbjct: 121149 aattcccactggcatcgtctgaggaccccttgctccccatccacaacaagctctctcctg 121208 Query: 447 cccatggctcatgctccacccctnccttcatcaaccggtcgatcacca 494 |||||||||||| ||||| ||| |||| ||||||||||| ||||||| Sbjct: 121209 gccatggctcatgttccactcctccctttatcaaccggtcaatcacca 121256 Score = 107 bits (54), Expect = 3e-20 Identities = 124/147 (84%), Gaps = 3/147 (2%) Strand = Plus / Plus Query: 2 gttagctctactcggngcatcaaagaatatacaactactcagagttgcaaagagttatcc 61 ||||||||||| ||| ||||||||||||| ||||| || |||||| ||||| | | || Sbjct: 120447 gttagctctacacggagcatcaaagaatacacaaccacccagagtgtcaaagggctctct 120506 Query: 62 attgacagcagtcaggctgaggacgacgaggttacaagtaaagccatgataaccaagaca 121 ||||||| ||| |||||| | || |||||||| ||||||||||| ||||| |||||| Sbjct: 120507 gttgacagtagtgaggctggg---gatgaggttaccagtaaagccatcataacaaagaca 120563 Query: 122 tcaagcatcctaaggactcccaagagc 148 ||||||||||||||||| ||||||||| Sbjct: 120564 tcaagcatcctaaggacgcccaagagc 120590
>ref|XM_707325.1| Candida albicans SC5314 hypothetical protein (CaO19.2143), mRNA Length = 2844 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 aaacatcttacaacagaacaa 215 ||||||||||||||||||||| Sbjct: 1641 aaacatcttacaacagaacaa 1661
>ref|XM_707182.1| Candida albicans SC5314 putative WD-40 repeat protein (CaO19.9690), mRNA Length = 2844 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 aaacatcttacaacagaacaa 215 ||||||||||||||||||||| Sbjct: 1641 aaacatcttacaacagaacaa 1661
>gb|BC044147.1| Danio rerio DIRAS family, GTP-binding RAS-like 1, mRNA (cDNA clone MGC:55360 IMAGE:2601525), complete cds Length = 2142 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 ctgatgtttccatgaacgcgc 368 ||||||||||||||||||||| Sbjct: 661 ctgatgtttccatgaacgcgc 641
>ref|NM_199831.1| Danio rerio DIRAS family, GTP-binding RAS-like 1 (diras1), mRNA Length = 2142 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 ctgatgtttccatgaacgcgc 368 ||||||||||||||||||||| Sbjct: 661 ctgatgtttccatgaacgcgc 641
>emb|CR376787.10| Zebrafish DNA sequence from clone DKEY-33C9 in linkage group 7, complete sequence Length = 217684 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 aaaacatcttacaacagaacaagc 217 ||||| |||||||||||||||||| Sbjct: 1303 aaaacctcttacaacagaacaagc 1280
>gb|AC146866.6| Medicago truncatula clone mth2-19a14, complete sequence Length = 145002 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aaataggaataggcttgaaa 188 |||||||||||||||||||| Sbjct: 98866 aaataggaataggcttgaaa 98847
>gb|AY243519.1| Tulasnella irregularis large subunit ribosomal RNA gene, partial sequence Length = 801 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagagtttccactggcttca 406 |||||||||||||||||||| Sbjct: 742 cagagtttccactggcttca 723
>gb|AY838863.1| Oenone fulgida 28S ribosomal RNA gene, partial sequence Length = 2579 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagagtttccactggcttca 406 |||||||||||||||||||| Sbjct: 895 cagagtttccactggcttca 876
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ttacaagtaaagccatgataacca 116 ||||||||||||||| |||||||| Sbjct: 18329724 ttacaagtaaagccaagataacca 18329701
>gb|AC012069.10| Homo sapiens BAC clone RP11-300D24 from 2, complete sequence Length = 149337 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 actggcttcatcagaggacc 416 |||||||||||||||||||| Sbjct: 9449 actggcttcatcagaggacc 9468
>gb|AY157158.1| Plicastoma cuticulata 28S large subunit ribosomal RNA gene, partial sequence Length = 3410 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagagtttccactggcttca 406 |||||||||||||||||||| Sbjct: 1033 cagagtttccactggcttca 1014
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 93 ttacaagtaaagccatgataacca 116 ||||||||||||||| |||||||| Sbjct: 44460 ttacaagtaaagccaagataacca 44437
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 aaaaacatcttacaacagaa 212 |||||||||||||||||||| Sbjct: 2607420 aaaaacatcttacaacagaa 2607439
>emb|AJ313228.1|PCU313228 Plicastoma cuticulata partial 28S rRNA gene Length = 1193 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 387 cagagtttccactggcttca 406 |||||||||||||||||||| Sbjct: 628 cagagtttccactggcttca 609 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,508,631 Number of Sequences: 3902068 Number of extensions: 3508631 Number of successful extensions: 66568 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66488 Number of HSP's gapped (non-prelim): 74 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
