>gb|AY663392.1| Triticum aestivum cultivar Renan clone BAC 930H14, complete sequence
          Length = 153766

 Score =  194 bits (98), Expect = 3e-46
 Identities = 140/154 (90%)
 Strand = Plus / Minus

                                                                         
Query: 311   gggaacgatgccatggaacgctgcaccagtgaatgccacgatctgtgcaccaagaacggt 370
             ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||  |
Sbjct: 94313 gggaaagatgccatggaacgctgcactagtggatgccacgatctgtgcaccaagaacaat 94254

                                                                         
Query: 371   gtggaaattgcacaagtcgtcgtggcttaactagttatggcaaggagctgcatcggacaa 430
             |  |||||||| |||||||||   ||||||||||||||| ||| |||||||||| |||||
Sbjct: 94253 gccgaaattgcgcaagtcgtcacagcttaactagttatgccaacgagctgcatctgacaa 94194

                                               
Query: 431   gcccgccaaggagtgtttgtgttgccttcaataa 464
             ||||||||||||||||||||||||||||||||||
Sbjct: 94193 gcccgccaaggagtgtttgtgttgccttcaataa 94160



 Score =  180 bits (91), Expect = 4e-42
 Identities = 201/239 (84%)
 Strand = Plus / Minus

                                                                         
Query: 1     gagaggcaacaatgncaagaccttggccatgatactcctagttctgggtcttgtggccat 60
             |||||||||||||| ||||||||||||  |||| ||| ||||| |||||||||||||  |
Sbjct: 95244 gagaggcaacaatgtcaagaccttggcgttgatgctcgtagttgtgggtcttgtggcact 95185

                                                                         
Query: 61    ggagcgaacccagcaagcgcaagcctcccattgctgttgtcatctagactcggtccctac 120
               ||| |||||||||||  ||||| ||||| || ||||| ||||||||||| ||||||||
Sbjct: 95184 ccagcaaacccagcaagtacaagcatcccactgttgttgccatctagactccgtccctac 95125

                                                                         
Query: 121   ctattttgactgccgcgccaaatctgatagcactgtctcagagtgctgcggtgtttccgc 180
             ||| ||| | |||||||  |||||||||||||| ||||||||||||||||||  ||| | 
Sbjct: 95124 ctactttaagtgccgcgagaaatctgatagcaccgtctcagagtgctgcggttcttctga 95065

                                                                        
Query: 181   cggctntntntcaaacgacgctggaactgaatgcaagtccggttatattgatatagaga 239
              |||| | | ||| ||| |||||||  ||||||||||||||||| ||| ||||||||||
Sbjct: 95064 tggctatatatcagacgccgctggatttgaatgcaagtccggttttatagatatagaga 95006



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                        
Query: 254   gtcaactactgcaagttggggtgcacggcttccttgtgtaacaaagtaactccatctgg 312
             ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct: 94603 gtcaactactgcaagctggggtgcaaggcttccttgtgcaacaaagtaactccatctgg 94545



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 76/87 (87%), Gaps = 1/87 (1%)
 Strand = Plus / Minus

                                                                         
Query: 435   gccaaggagtgtttgtgttgccttcaataactggatgtcgcatccaagaccagtat-atg 493
             ||||||||||| || ||||| ||||||||| ||| |||| ||||||| | |||||  |||
Sbjct: 89697 gccaaggagtgattatgttgtcttcaataattgggtgtcacatccaatatcagtaggatg 89638

                                        
Query: 494   tcaaatgttacttgtgttgcaatttta 520
             |||||||||||||||||| ||||||||
Sbjct: 89637 tcaaatgttacttgtgttacaatttta 89611



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                        
Query: 254   gtcaactactgcaagttggggtgcacggcttccttgtgtaacaaagtaactccatctgg 312
             ||||||||||||||| ||||||||||||||||| |||| |||| | ||||| |||||||
Sbjct: 90330 gtcaactactgcaagctggggtgcacggcttccgtgtgcaacacattaacttcatctgg 90272

>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 435    gccaaggagtgtttgtgttgccttcaataactggatgtcgcatccaagaccagtatatgt 494
              |||||||||||||| ||||||||||||||| |||||||| || |||| | ||||| ||||
Sbjct: 181728 gccaaggagtgtttatgttgccttcaataattggatgtcacacccaatatcagtagatgt 181669

                               
Query: 495    caaatgttacttgtgtt 511
              |||||||||||||||||
Sbjct: 181668 caaatgttacttgtgtt 181652



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 67     aacccagcaagcgcaagcctcccattgctgttg 99
              |||||||||||| ||||| |||||||| |||||
Sbjct: 179399 aacccagcaagcacaagcttcccattgttgttg 179367



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                   
Query: 429    aagcccgccaaggagtgtttgtgttgccttcaataactggatgtcgcatccaa 481
              ||||| ||||||||||| || ||||||||||| | | ||||| || |||||||
Sbjct: 179200 aagccagccaaggagtgcttatgttgccttcagtgattggatttcacatccaa 179148

>gb|AC126263.4| Mus musculus BAC clone RP23-359P12 from chromosome 8, complete sequence
          Length = 223991

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 84     cctcccattgctgttgtcatc 104
              |||||||||||||||||||||
Sbjct: 198784 cctcccattgctgttgtcatc 198804

>emb|BX908747.25| Zebrafish DNA sequence from clone DKEY-58J15 in linkage group 1,
            complete sequence
          Length = 232503

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 277  cacggcttccttgtgtaacaa 297
            |||||||||||||||||||||
Sbjct: 9555 cacggcttccttgtgtaacaa 9575

>gb|AC147558.3| Mus musculus BAC clone RP23-470N2 from 8, complete sequence
          Length = 212626

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 84     cctcccattgctgttgtcatc 104
              |||||||||||||||||||||
Sbjct: 164889 cctcccattgctgttgtcatc 164869

>ref|XM_631184.1| Dictyostelium discoideum hypothetical protein (DDB0219427), partial
           mRNA
          Length = 1002

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 509 gttgcaattttagctccaat 528
           ||||||||||||||||||||
Sbjct: 958 gttgcaattttagctccaat 977

>gb|AY326313.1| Paenibacillus sp. Dex70-34 RNA binding protein-like protein gene,
            partial cds; dextranase 1 (dex1) gene, complete cds; and
            methyl-accepting chemotaxis protein histidine kinase
            gene, partial cds
          Length = 4615

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  tgggaacgatgccatggaac 329
            ||||||||||||||||||||
Sbjct: 4363 tgggaacgatgccatggaac 4344

>gb|AC108797.8| Mus musculus chromosome 3, clone RP23-349M18, complete sequence
          Length = 208211

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gctggaactgaatgcaagtc 219
             ||||||||||||||||||||
Sbjct: 99166 gctggaactgaatgcaagtc 99147

>emb|AL356552.8| Human DNA sequence from clone RP4-732F8 on chromosome 1p34.3-36.11
            Contains GSSs, complete sequence
          Length = 25633

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 515  attttagctccaataaggct 534
            ||||||||||||||||||||
Sbjct: 2158 attttagctccaataaggct 2139

>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 609     gcgtatgacattgtcaaagcatga 632
               |||||||||||| |||||||||||
Sbjct: 4375087 gcgtatgacattatcaaagcatga 4375064

>gb|AC108685.4| Homo sapiens X BAC RP11-323F16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 178333

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 514    aattttagctccaataaggc 533
              ||||||||||||||||||||
Sbjct: 102263 aattttagctccaataaggc 102244

>gb|AC144807.23| Medicago truncatula clone mth2-9j13, complete sequence
          Length = 115904

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 582   atattagatgtttttgttgt 601
             ||||||||||||||||||||
Sbjct: 58928 atattagatgtttttgttgt 58947

>gb|AC106882.5| Homo sapiens BAC clone RP11-768B22 from 4, complete sequence
          Length = 176692

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   ttgatatagagaaagtttca 247
             ||||||||||||||||||||
Sbjct: 31302 ttgatatagagaaagtttca 31283

>gb|AC106713.3| Homo sapiens X BAC RP11-770A12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125790

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   aattttagctccaataaggc 533
             ||||||||||||||||||||
Sbjct: 78058 aattttagctccaataaggc 78077

>gb|AC096774.1| Homo sapiens BAC clone RP11-286D5 from 4, complete sequence
          Length = 178438

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   atgtttttgttgtatccttg 608
             ||||||||||||||||||||
Sbjct: 16736 atgtttttgttgtatccttg 16755

>dbj|AK088595.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430021B11
            product:unclassifiable, full insert sequence
          Length = 2181

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 2    agaggcaacaatgncaagacctt 24
            ||||||||||||| |||||||||
Sbjct: 1525 agaggcaacaatggcaagacctt 1503

>dbj|AK084153.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230004A11 product:unclassifiable, full
            insert sequence
          Length = 2955

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 2    agaggcaacaatgncaagacctt 24
            ||||||||||||| |||||||||
Sbjct: 1612 agaggcaacaatggcaagacctt 1590

>dbj|AK050918.1| Mus musculus 9 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:D030035A18
            product:unclassifiable, full insert sequence
          Length = 2180

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 2    agaggcaacaatgncaagacctt 24
            ||||||||||||| |||||||||
Sbjct: 1458 agaggcaacaatggcaagacctt 1436

>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 2     agaggcaacaatgncaagacctt 24
             ||||||||||||| |||||||||
Sbjct: 18158 agaggcaacaatggcaagacctt 18180

>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 423    tcggacaagcccgccaagga 442
              ||||||||||||||||||||
Sbjct: 107653 tcggacaagcccgccaagga 107672


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,666,150
Number of Sequences: 3902068
Number of extensions: 4666150
Number of successful extensions: 75337
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75256
Number of HSP's gapped (non-prelim): 80
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)