ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18o23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW 32 2.0
2OLF6_CHICK (P37072) Olfactory receptor-like protein COR6 31 2.6
3SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is... 31 2.6
4INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain ... 30 5.7
5OLF4_CHICK (P37070) Olfactory receptor-like protein COR4 29 9.8

>CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW|
          Length = 276

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -2

Query: 353 FLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWR 252
           F+ +E+ PV+  L P +E A  ++ +K W++ WR
Sbjct: 154 FVAREVIPVLEELGPEQEEAARTLGAKDWQIFWR 187



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>OLF6_CHICK (P37072) Olfactory receptor-like protein COR6|
          Length = 312

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +3

Query: 102 DS*PTMMLNNTIYSLNELCLFYFGTIPMSKLIVSVRIHIVAAVKT*ITMESPE 260
           D+ P   ++++  +LNEL +F FG++ +   I+++ I  V  + T + + S E
Sbjct: 180 DNSPLFQISSSSTALNELLVFIFGSLFVMSSIITILISYVFIILTVVRIRSKE 232



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>SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase 1) (IleRS 1) (IleRS-R1)
          Length = 943

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = -2

Query: 359 GHFLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWRFHCNLCFXXXXXXXXXXXDEFTHR 180
           G F+ +  QP+I  L  +    +T+ +  S+   WR    L +            E T  
Sbjct: 371 GQFIFKADQPIIEKLREVGALMQTAAIQHSYMHCWRHKTPLIYRATAQWFIGMDKEPTSG 430

Query: 179 DSTKIKQAKFIETVNCV 129
           D+ +++  K IE    V
Sbjct: 431 DTLRVRSLKAIEDTKFV 447



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>INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain precursor|
           (IFN-alpha-REC)
          Length = 557

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
 Frame = -2

Query: 479 IKNTYSLHLLEFLFEIYALSPYCVYRWKLVIVKFNSPKYFGHFLVQEIQPVIMSLLPLKE 300
           I+N YS H      +IY LSP   Y  K+      S K   +  V  I+  + + LP  E
Sbjct: 180 IENIYSRH------KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPE 233

Query: 299 AARTSIVSKSWRMLWRF-HCNLCFXXXXXXXXXXXDEFTHRDSTK-IKQAKFIETVNCV 129
               S+ ++++ + W + + N+ F           +   H    K I   + ++T  CV
Sbjct: 234 NIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCV 292



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>OLF4_CHICK (P37070) Olfactory receptor-like protein COR4|
          Length = 312

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +3

Query: 102 DS*PTMMLNNTIYSLNELCLFYFGTIPMSKLIVSVRIHIVAAVKT*ITMESPE 260
           D+ P   ++++  +LNEL +F FG++     I+++ I  V  + T + + S +
Sbjct: 180 DNSPLFQISSSSTTLNELLVFIFGSLFAMSSIITILISYVFIILTVVRIRSKD 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,189,575
Number of Sequences: 219361
Number of extensions: 1600646
Number of successful extensions: 2892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2891
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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