| Clone Name | bags18o23 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW | 32 | 2.0 | 2 | OLF6_CHICK (P37072) Olfactory receptor-like protein COR6 | 31 | 2.6 | 3 | SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Is... | 31 | 2.6 | 4 | INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain ... | 30 | 5.7 | 5 | OLF4_CHICK (P37070) Olfactory receptor-like protein COR4 | 29 | 9.8 |
|---|
>CYSW_SYNY3 (P74547) Sulfate transport system permease protein cysW| Length = 276 Score = 31.6 bits (70), Expect = 2.0 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = -2 Query: 353 FLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWR 252 F+ +E+ PV+ L P +E A ++ +K W++ WR Sbjct: 154 FVAREVIPVLEELGPEQEEAARTLGAKDWQIFWR 187
>OLF6_CHICK (P37072) Olfactory receptor-like protein COR6| Length = 312 Score = 31.2 bits (69), Expect = 2.6 Identities = 15/53 (28%), Positives = 31/53 (58%) Frame = +3 Query: 102 DS*PTMMLNNTIYSLNELCLFYFGTIPMSKLIVSVRIHIVAAVKT*ITMESPE 260 D+ P ++++ +LNEL +F FG++ + I+++ I V + T + + S E Sbjct: 180 DNSPLFQISSSSTALNELLVFIFGSLFVMSSIITILISYVFIILTVVRIRSKE 232
>SYI1_PSEFL (P18330) Isoleucyl-tRNA synthetase 1 (EC 6.1.1.5) (Isoleucine--tRNA| ligase 1) (IleRS 1) (IleRS-R1) Length = 943 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/77 (23%), Positives = 31/77 (40%) Frame = -2 Query: 359 GHFLVQEIQPVIMSLLPLKEAARTSIVSKSWRMLWRFHCNLCFXXXXXXXXXXXDEFTHR 180 G F+ + QP+I L + +T+ + S+ WR L + E T Sbjct: 371 GQFIFKADQPIIEKLREVGALMQTAAIQHSYMHCWRHKTPLIYRATAQWFIGMDKEPTSG 430 Query: 179 DSTKIKQAKFIETVNCV 129 D+ +++ K IE V Sbjct: 431 DTLRVRSLKAIEDTKFV 447
>INAR1_HUMAN (P17181) Interferon-alpha/beta receptor alpha chain precursor| (IFN-alpha-REC) Length = 557 Score = 30.0 bits (66), Expect = 5.7 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Frame = -2 Query: 479 IKNTYSLHLLEFLFEIYALSPYCVYRWKLVIVKFNSPKYFGHFLVQEIQPVIMSLLPLKE 300 I+N YS H +IY LSP Y K+ S K + V I+ + + LP E Sbjct: 180 IENIYSRH------KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPE 233 Query: 299 AARTSIVSKSWRMLWRF-HCNLCFXXXXXXXXXXXDEFTHRDSTK-IKQAKFIETVNCV 129 S+ ++++ + W + + N+ F + H K I + ++T CV Sbjct: 234 NIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCV 292
>OLF4_CHICK (P37070) Olfactory receptor-like protein COR4| Length = 312 Score = 29.3 bits (64), Expect = 9.8 Identities = 14/53 (26%), Positives = 30/53 (56%) Frame = +3 Query: 102 DS*PTMMLNNTIYSLNELCLFYFGTIPMSKLIVSVRIHIVAAVKT*ITMESPE 260 D+ P ++++ +LNEL +F FG++ I+++ I V + T + + S + Sbjct: 180 DNSPLFQISSSSTTLNELLVFIFGSLFAMSSIITILISYVFIILTVVRIRSKD 232 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,189,575 Number of Sequences: 219361 Number of extensions: 1600646 Number of successful extensions: 2892 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2891 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)