ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK105307.1| Oryza sativa (japonica cultivar-group) cDNA clon... 355 9e-95
2gb|AY105246.1| Zea mays PCO130570 mRNA sequence 274 3e-70
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 240 4e-60
4gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome... 240 4e-60
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 240 4e-60
6gb|BT018521.1| Zea mays clone EL01N0432B04.d mRNA sequence 234 2e-58
7gb|BT009042.1| Triticum aestivum clone wdk5c.pk006.d13:fis, full... 127 4e-26
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 48 0.027
9gb|U47078.1|DCU47078 Daucus carota globulin-like protein mRNA, s... 48 0.027
10gb|BT013421.1| Lycopersicon esculentum clone 132059R, mRNA sequence 44 0.42
11emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chr... 44 0.42
12gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.7
13gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.6
14gb|BC016414.1| Mus musculus acyl-CoA synthetase medium-chain fam... 40 6.6
15gb|BC022149.1| Mus musculus acyl-CoA synthetase medium-chain fam... 40 6.6
16gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.6
17gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.6
18ref|NM_054094.4| Mus musculus acyl-CoA synthetase medium-chain f... 40 6.6
19gb|AY564767.1| Hepatitis C virus isolate BO-124 polyprotein gene... 40 6.6
20emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.6
21emb|X14112.1|HE1CG Human herpesvirus 1 complete genome 40 6.6
22ref|XM_807077.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.6
23ref|XM_810226.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.6
24emb|AL390123.14| Human DNA sequence from clone RP11-566F5 on chr... 40 6.6
25emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.6
26gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 40 6.6
27gb|AC117499.3| Homo sapiens 12 BAC RP11-295A20 (Roswell Park Can... 40 6.6
28dbj|AK149586.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 6.6
29dbj|AK149550.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 6.6
30dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.6
31gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 6.6
32dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.6
33emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.6
34emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 6.6
35gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.6
36dbj|AB059428.1| Mus musculus MACS mRNA for medium-chain acyl-CoA... 40 6.6

>dbj|AK105307.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B06, full
           insert sequence
          Length = 1216

 Score =  355 bits (179), Expect = 9e-95
 Identities = 389/459 (84%)
 Strand = Plus / Plus

                                                                       
Query: 2   caagactgtgcgcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaa 61
           |||||| ||||||||||||||||| |||||||| | ||| || |   || ||||||| ||
Sbjct: 378 caagacggtgcgcgcgccggagccgtacaacctctacgagcagggcaccggcttccgcaa 437

                                                                       
Query: 62  cacctacggttggagtatctccgtcgacaagcacgactacgagcccttggaccgctcaga 121
           | ||||||| |  ||  || |||||||||||||||||||||||||| | | || ||| ||
Sbjct: 438 cgcctacggatccagcgtcgccgtcgacaagcacgactacgagcccctcggccactccga 497

                                                                       
Query: 122 catcggcgtctatctcgtcaacctcaccgccggctcgatgatggcgccacacgtgaaccc 181
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 498 catcggcgtctatctcgtcaacctcaccgccggatcgatgatggcgccgcacgtgaaccc 557

                                                                       
Query: 182 gagggcggcggagtacggcgtggtgctcggcggggaaggcatcatccaggtggtcttccc 241
           ||||||| ||||||||||||| |||||| |||||   |||  |||| |||| || |||||
Sbjct: 558 gagggcgacggagtacggcgtcgtgctcagcgggacgggctgcatcgaggtcgtgttccc 617

                                                                       
Query: 242 caacgggtcccttgcgatgagcgcgcaggtgcgtgccggcgacgtgttccggatcccacg 301
            ||||||||    ||||||||||||  |||||| |||||||||||||||   ||||| ||
Sbjct: 618 gaacgggtcgaaggcgatgagcgcgacggtgcgcgccggcgacgtgttctacatcccgcg 677

                                                                       
Query: 302 ctacttcccgttcgtccaggtagcgtcgcggggtgggccgttcgtgttcttcgggttcac 361
           |||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 678 ctacttcccgttctgccaggtggcgtcgcggggcgggccgttcgtgttcttcgggttcac 737

                                                                       
Query: 362 cacgtcggcgctgcggaacaagcctcagttcctggtcggccccacctctgtcctccgcgt 421
            |||||||||| ||||||| | ||||||||||| ||||||  | |||| || ||||||| 
Sbjct: 738 gacgtcggcgcggcggaaccaccctcagttcctcgtcggcggctcctccgtgctccgcgc 797

                                                  
Query: 422 gattctcgggccggagctcgcggccgggttgggcgtccc 460
             | |||||| |||||||||| |||| ||| ||||||||
Sbjct: 798 cctgctcgggacggagctcgccgccgcgttcggcgtccc 836



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>gb|AY105246.1| Zea mays PCO130570 mRNA sequence
          Length = 1823

 Score =  274 bits (138), Expect = 3e-70
 Identities = 339/406 (83%)
 Strand = Plus / Minus

                                                                       
Query: 13  gcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaacacctacggtt 72
           ||||||||||||| |||||||| | ||||   |||||| | ||||||||| | ||||| |
Sbjct: 760 gcgcgccggagccgtacaacctctacgacagcgagcccgggttccggaacgcgtacggct 701

                                                                       
Query: 73  ggagtatctccgtcgacaagcacgactacgagcccttggaccgctcagacatcggcgtct 132
           |||   ||||||||||||||||| | ||||||||| |  | | | | |||||||||||||
Sbjct: 700 ggaccgtctccgtcgacaagcaccagtacgagcccctcaagcacccggacatcggcgtct 641

                                                                       
Query: 133 atctcgtcaacctcaccgccggctcgatgatggcgccacacgtgaacccgagggcggcgg 192
           | ||||| ||||||||||| || |||||| ||||||| |||||||||||  ||||| |||
Sbjct: 640 acctcgtgaacctcaccgcggggtcgatgctggcgccgcacgtgaaccctcgggcgacgg 581

                                                                       
Query: 193 agtacggcgtggtgctcggcggggaaggcatcatccaggtggtcttccccaacgggtccc 252
           |||||||||||||||| |||||||||||||   |||||||||| ||||| ||||||||||
Sbjct: 580 agtacggcgtggtgctgggcggggaaggcacggtccaggtggtgttcccgaacgggtccc 521

                                                                       
Query: 253 ttgcgatgagcgcgcaggtgcgtgccggcgacgtgttccggatcccacgctacttcccgt 312
           | |||||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||| |
Sbjct: 520 tggcgatgagcgaggtggtgcgccccggcgacgtgttctggatcccgcgctacttcccct 461

                                                                       
Query: 313 tcgtccaggtagcgtcgcggggtgggccgttcgtgttcttcgggttcaccacgtcggcgc 372
           ||  |||||| ||| ||||||  ||||| |||| ||||||||| |||||||| |||||||
Sbjct: 460 tctgccaggtggcggcgcgggccgggcccttcgagttcttcggcttcaccacctcggcgc 401

                                                         
Query: 373 tgcggaacaagcctcagttcctggtcggccccacctctgtcctccg 418
             || |||  ||| ||||||||||||||| || |||| || |||||
Sbjct: 400 gccgcaaccggccgcagttcctggtcggcgcctcctcggtgctccg 355



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  240 bits (121), Expect = 4e-60
 Identities = 259/305 (84%)
 Strand = Plus / Minus

                                                                            
Query: 156      tcgatgatggcgccacacgtgaacccgagggcggcggagtacggcgtggtgctcggcggg 215
                |||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 12421050 tcgatgatggcgccgcacgtgaacccgagggcgacggagtacggcgtcgtgctcagcggg 12420991

                                                                            
Query: 216      gaaggcatcatccaggtggtcttccccaacgggtcccttgcgatgagcgcgcaggtgcgt 275
                   |||  |||| |||| || ||||| ||||||||    ||||||||||||  |||||| 
Sbjct: 12420990 acgggctgcatcgaggtcgtgttcccgaacgggtcgaaggcgatgagcgcgacggtgcgc 12420931

                                                                            
Query: 276      gccggcgacgtgttccggatcccacgctacttcccgttcgtccaggtagcgtcgcggggt 335
                |||||||||||||||   ||||| |||||||||||||||  |||||| ||||||||||| 
Sbjct: 12420930 gccggcgacgtgttctacatcccgcgctacttcccgttctgccaggtggcgtcgcggggc 12420871

                                                                            
Query: 336      gggccgttcgtgttcttcgggttcaccacgtcggcgctgcggaacaagcctcagttcctg 395
                |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||| 
Sbjct: 12420870 gggccgttcgtgttcttcgggttcacgacgtcggcgcggcggaaccaccctcagttcctc 12420811

                                                                            
Query: 396      gtcggccccacctctgtcctccgcgtgattctcgggccggagctcgcggccgggttgggc 455
                ||||||  | |||| || |||||||   | |||||| |||||||||| |||| ||| |||
Sbjct: 12420810 gtcggcggctcctccgtgctccgcgccctgctcgggacggagctcgccgccgcgttcggc 12420751

                     
Query: 456      gtccc 460
                |||||
Sbjct: 12420750 gtccc 12420746



 Score =  119 bits (60), Expect = 9e-24
 Identities = 129/152 (84%)
 Strand = Plus / Minus

                                                                            
Query: 2        caagactgtgcgcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaa 61
                |||||| ||||||||||||||||| |||||||| | ||| || |   || ||||||| ||
Sbjct: 12421316 caagacggtgcgcgcgccggagccgtacaacctctacgagcagggcaccggcttccgcaa 12421257

                                                                            
Query: 62       cacctacggttggagtatctccgtcgacaagcacgactacgagcccttggaccgctcaga 121
                | ||||||| |  ||  || |||||||||||||||||||||||||| | | || ||| ||
Sbjct: 12421256 cgcctacggatccagcgtcgccgtcgacaagcacgactacgagcccctcggccactccga 12421197

                                                
Query: 122      catcggcgtctatctcgtcaacctcaccgccg 153
                ||||||||||||||||||||||||||||||||
Sbjct: 12421196 catcggcgtctatctcgtcaacctcaccgccg 12421165



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>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score =  240 bits (121), Expect = 4e-60
 Identities = 259/305 (84%)
 Strand = Plus / Minus

                                                                         
Query: 156   tcgatgatggcgccacacgtgaacccgagggcggcggagtacggcgtggtgctcggcggg 215
             |||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 80068 tcgatgatggcgccgcacgtgaacccgagggcgacggagtacggcgtcgtgctcagcggg 80009

                                                                         
Query: 216   gaaggcatcatccaggtggtcttccccaacgggtcccttgcgatgagcgcgcaggtgcgt 275
                |||  |||| |||| || ||||| ||||||||    ||||||||||||  |||||| 
Sbjct: 80008 acgggctgcatcgaggtcgtgttcccgaacgggtcgaaggcgatgagcgcgacggtgcgc 79949

                                                                         
Query: 276   gccggcgacgtgttccggatcccacgctacttcccgttcgtccaggtagcgtcgcggggt 335
             |||||||||||||||   ||||| |||||||||||||||  |||||| ||||||||||| 
Sbjct: 79948 gccggcgacgtgttctacatcccgcgctacttcccgttctgccaggtggcgtcgcggggc 79889

                                                                         
Query: 336   gggccgttcgtgttcttcgggttcaccacgtcggcgctgcggaacaagcctcagttcctg 395
             |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||| 
Sbjct: 79888 gggccgttcgtgttcttcgggttcacgacgtcggcgcggcggaaccaccctcagttcctc 79829

                                                                         
Query: 396   gtcggccccacctctgtcctccgcgtgattctcgggccggagctcgcggccgggttgggc 455
             ||||||  | |||| || |||||||   | |||||| |||||||||| |||| ||| |||
Sbjct: 79828 gtcggcggctcctccgtgctccgcgccctgctcgggacggagctcgccgccgcgttcggc 79769

                  
Query: 456   gtccc 460
             |||||
Sbjct: 79768 gtccc 79764



 Score =  119 bits (60), Expect = 9e-24
 Identities = 129/152 (84%)
 Strand = Plus / Minus

                                                                         
Query: 2     caagactgtgcgcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaa 61
             |||||| ||||||||||||||||| |||||||| | ||| || |   || ||||||| ||
Sbjct: 80334 caagacggtgcgcgcgccggagccgtacaacctctacgagcagggcaccggcttccgcaa 80275

                                                                         
Query: 62    cacctacggttggagtatctccgtcgacaagcacgactacgagcccttggaccgctcaga 121
             | ||||||| |  ||  || |||||||||||||||||||||||||| | | || ||| ||
Sbjct: 80274 cgcctacggatccagcgtcgccgtcgacaagcacgactacgagcccctcggccactccga 80215

                                             
Query: 122   catcggcgtctatctcgtcaacctcaccgccg 153
             ||||||||||||||||||||||||||||||||
Sbjct: 80214 catcggcgtctatctcgtcaacctcaccgccg 80183



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  240 bits (121), Expect = 4e-60
 Identities = 259/305 (84%)
 Strand = Plus / Minus

                                                                            
Query: 156      tcgatgatggcgccacacgtgaacccgagggcggcggagtacggcgtggtgctcggcggg 215
                |||||||||||||| |||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct: 12417813 tcgatgatggcgccgcacgtgaacccgagggcgacggagtacggcgtcgtgctcagcggg 12417754

                                                                            
Query: 216      gaaggcatcatccaggtggtcttccccaacgggtcccttgcgatgagcgcgcaggtgcgt 275
                   |||  |||| |||| || ||||| ||||||||    ||||||||||||  |||||| 
Sbjct: 12417753 acgggctgcatcgaggtcgtgttcccgaacgggtcgaaggcgatgagcgcgacggtgcgc 12417694

                                                                            
Query: 276      gccggcgacgtgttccggatcccacgctacttcccgttcgtccaggtagcgtcgcggggt 335
                |||||||||||||||   ||||| |||||||||||||||  |||||| ||||||||||| 
Sbjct: 12417693 gccggcgacgtgttctacatcccgcgctacttcccgttctgccaggtggcgtcgcggggc 12417634

                                                                            
Query: 336      gggccgttcgtgttcttcgggttcaccacgtcggcgctgcggaacaagcctcagttcctg 395
                |||||||||||||||||||||||||| |||||||||| ||||||| | ||||||||||| 
Sbjct: 12417633 gggccgttcgtgttcttcgggttcacgacgtcggcgcggcggaaccaccctcagttcctc 12417574

                                                                            
Query: 396      gtcggccccacctctgtcctccgcgtgattctcgggccggagctcgcggccgggttgggc 455
                ||||||  | |||| || |||||||   | |||||| |||||||||| |||| ||| |||
Sbjct: 12417573 gtcggcggctcctccgtgctccgcgccctgctcgggacggagctcgccgccgcgttcggc 12417514

                     
Query: 456      gtccc 460
                |||||
Sbjct: 12417513 gtccc 12417509



 Score =  119 bits (60), Expect = 9e-24
 Identities = 129/152 (84%)
 Strand = Plus / Minus

                                                                            
Query: 2        caagactgtgcgcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaa 61
                |||||| ||||||||||||||||| |||||||| | ||| || |   || ||||||| ||
Sbjct: 12418079 caagacggtgcgcgcgccggagccgtacaacctctacgagcagggcaccggcttccgcaa 12418020

                                                                            
Query: 62       cacctacggttggagtatctccgtcgacaagcacgactacgagcccttggaccgctcaga 121
                | ||||||| |  ||  || |||||||||||||||||||||||||| | | || ||| ||
Sbjct: 12418019 cgcctacggatccagcgtcgccgtcgacaagcacgactacgagcccctcggccactccga 12417960

                                                
Query: 122      catcggcgtctatctcgtcaacctcaccgccg 153
                ||||||||||||||||||||||||||||||||
Sbjct: 12417959 catcggcgtctatctcgtcaacctcaccgccg 12417928



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>gb|BT018521.1| Zea mays clone EL01N0432B04.d mRNA sequence
          Length = 1363

 Score =  234 bits (118), Expect = 2e-58
 Identities = 334/406 (82%)
 Strand = Plus / Minus

                                                                       
Query: 13  gcgcgccggagccctacaacctgttcgaccatgagcccagcttccggaacacctacggtt 72
           ||||||||||||| |||||||| | ||||   |||||| | ||||||||| | ||||| |
Sbjct: 797 gcgcgccggagccgtacaacctctacgacagcgagcccgggttccggaacgcgtacggct 738

                                                                       
Query: 73  ggagtatctccgtcgacaagcacgactacgagcccttggaccgctcagacatcggcgtct 132
           |||   ||||||||||||| ||| | ||||||||| |  | | | | |||||||||||||
Sbjct: 737 ggaccgtctccgtcgacaaacaccaatacgagcccctcaagcacccggacatcggcgtct 678

                                                                       
Query: 133 atctcgtcaacctcaccgccggctcgatgatggcgccacacgtgaacccgagggcggcgg 192
           | ||||| ||||||||||| || |  | | ||||||| |||||||||||  ||||| |||
Sbjct: 677 acctcgtgaacctcaccgcggggtaaagggtggcgccgcacgtgaaccctcgggcgacgg 618

                                                                       
Query: 193 agtacggcgtggtgctcggcggggaaggcatcatccaggtggtcttccccaacgggtccc 252
           |||||||||||||||| |||||||||||||   |||||||||| ||||| ||||| ||||
Sbjct: 617 agtacggcgtggtgctgggcggggaaggcacggtccaggtggtgttcccgaacggatccc 558

                                                                       
Query: 253 ttgcgatgagcgcgcaggtgcgtgccggcgacgtgttccggatcccacgctacttcccgt 312
           | |||||||||| |  ||||||  |||||||||||||| ||||||| ||||||||||| |
Sbjct: 557 tggcgatgagcgaggtggtgcgccccggcgacgtgttctggatcccgcgctacttcccct 498

                                                                       
Query: 313 tcgtccaggtagcgtcgcggggtgggccgttcgtgttcttcgggttcaccacgtcggcgc 372
           ||  |||||| ||| ||||||  ||||| |||| ||||||||| |||||||| |||||||
Sbjct: 497 tctgccaggtggcggcgcgggccgggcccttcgagttcttcggcttcaccacctcggcgc 438

                                                         
Query: 373 tgcggaacaagcctcagttcctggtcggccccacctctgtcctccg 418
             || |||  ||| ||||||||||||||| || |||| || |||||
Sbjct: 437 gccgcaaccggccgcagttcctggtcggcgcctcctcggtgctccg 392



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>gb|BT009042.1| Triticum aestivum clone wdk5c.pk006.d13:fis, full insert mRNA
           sequence
          Length = 454

 Score =  127 bits (64), Expect = 4e-26
 Identities = 108/123 (87%), Gaps = 6/123 (4%)
 Strand = Plus / Plus

                                                                       
Query: 374 gcggaacaagcctcagttcctggtcggccccacctctgtcctccgcgtgattctcgggcc 433
           |||||||||||| |||||||||   ||||||||||||||| ||||| |||| ||||||||
Sbjct: 7   gcggaacaagccgcagttcctgacaggccccacctctgtcttccgcatgatgctcgggcc 66

                                                                       
Query: 434 ggagctcgcggccgggttgggcgtccc------tttgaaggaattgagggaggtggtgga 487
           |||||||||||||||||||||||||||      |  ||||||||||||||||||||||||
Sbjct: 67  ggagctcgcggccgggttgggcgtccctgagaatgagaaggaattgagggaggtggtgga 126

              
Query: 488 ggc 490
           |||
Sbjct: 127 ggc 129



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 145     tcaccgccggctcgatgatggcgc 168
               ||||||||||||||||||||||||
Sbjct: 4961765 tcaccgccggctcgatgatggcgc 4961788



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>gb|U47078.1|DCU47078 Daucus carota globulin-like protein mRNA, somatic embryo clone Gea8,
            complete cds
          Length = 1719

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 129  gtctatctcgtcaacctcaccgccggctcgatgatggcgccaca 172
            |||||||| ||||| |||||||| || || ||||||||||||||
Sbjct: 1003 gtctatctagtcaatctcaccgcgggatcaatgatggcgccaca 1046



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>gb|BT013421.1| Lycopersicon esculentum clone 132059R, mRNA sequence
          Length = 1748

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 120  gacatcggcgtctatctcgtcaacct 145
            ||||| ||||||||||||||||||||
Sbjct: 1011 gacattggcgtctatctcgtcaacct 1036



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>emb|BX537302.12| Mouse DNA sequence from clone RP23-349I9 on chromosome 7, complete
             sequence
          Length = 214393

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 400   gccccacctctgtcctccgcgt 421
             ||||||||||||||||||||||
Sbjct: 93697 gccccacctctgtcctccgcgt 93718



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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 439    tcgcggccgggttgggcgtcc 459
              |||||||||||||||||||||
Sbjct: 434028 tcgcggccgggttgggcgtcc 434048



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     tcgtcaacctcaccgccggc 155
               ||||||||||||||||||||
Sbjct: 5886632 tcgtcaacctcaccgccggc 5886651



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>gb|BC016414.1| Mus musculus acyl-CoA synthetase medium-chain family member 1, mRNA
           (cDNA clone MGC:25954 IMAGE:4238964), complete cds
          Length = 2059

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 963 gaattgagggaggtggtgga 944



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>gb|BC022149.1| Mus musculus acyl-CoA synthetase medium-chain family member 1, mRNA
           (cDNA clone MGC:37916 IMAGE:5102652), complete cds
          Length = 2034

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 944 gaattgagggaggtggtgga 925



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      tcgacaagcacgactacgag 104
               ||||||||||||||||||||
Sbjct: 1945316 tcgacaagcacgactacgag 1945297



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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 138     gtcaacctcaccgccggctcgatg 161
               |||| |||||||||||||||||||
Sbjct: 2204880 gtcatcctcaccgccggctcgatg 2204903



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>ref|NM_054094.4| Mus musculus acyl-CoA synthetase medium-chain family member 1
           (Acsm1), mRNA
          Length = 2045

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 970 gaattgagggaggtggtgga 951



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>gb|AY564767.1| Hepatitis C virus isolate BO-124 polyprotein gene, partial sequence
          Length = 141

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 172 acgtgaacccgagggcggcg 191
           ||||||||||||||||||||
Sbjct: 109 acgtgaacccgagggcggcg 90



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    gcaggtgcgtgccggcgacg 285
              ||||||||||||||||||||
Sbjct: 629489 gcaggtgcgtgccggcgacg 629508



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>emb|X14112.1|HE1CG Human herpesvirus 1 complete genome
          Length = 152261

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 422   gattctcgggccggagctcgcggc 445
             ||||| ||||||||||||||||||
Sbjct: 31229 gattcccgggccggagctcgcggc 31206



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>ref|XM_807077.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510305.79) partial mRNA
          Length = 4233

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtcccttgcgatgagcgcgc 267
            ||||||||||||||||||||
Sbjct: 1926 gtcccttgcgatgagcgcgc 1945



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>ref|XM_810226.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053509153.10) partial mRNA
          Length = 4236

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  gtcccttgcgatgagcgcgc 267
            ||||||||||||||||||||
Sbjct: 1926 gtcccttgcgatgagcgcgc 1945



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>emb|AL390123.14| Human DNA sequence from clone RP11-566F5 on chromosome 10, complete
              sequence
          Length = 158093

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 286    tgttccggatcccacgctac 305
              ||||||||||||||||||||
Sbjct: 146009 tgttccggatcccacgctac 146028



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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 145    tcaccgccggctcgatgatggcgc 168
              |||||||||||||| |||||||||
Sbjct: 161259 tcaccgccggctcggtgatggcgc 161282



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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     tcgtcaacctcaccgccggc 155
               ||||||||||||||||||||
Sbjct: 6553815 tcgtcaacctcaccgccggc 6553834



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>gb|AC117499.3| Homo sapiens 12 BAC RP11-295A20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 13965

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 217  aaggcatcatccaggtggtcttccccaa 244
            ||||||||||||||| |||||| |||||
Sbjct: 6771 aaggcatcatccagggggtcttgcccaa 6744



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>dbj|AK149586.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730047E18 product:butyryl
           Coenzyme A synthetase 1, full insert sequence
          Length = 1706

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 992 gaattgagggaggtggtgga 973



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>dbj|AK149550.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730036G06 product:butyryl
           Coenzyme A synthetase 1, full insert sequence
          Length = 2050

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 976 gaattgagggaggtggtgga 957



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    acgactacgagcccttggac 113
             ||||||||||||||||||||
Sbjct: 89824 acgactacgagcccttggac 89843



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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 468   gaattgagggaggtggtgga 487
             ||||||||||||||||||||
Sbjct: 95502 gaattgagggaggtggtgga 95483



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 255     gcgatgagcgcgcaggtgcg 274
               ||||||||||||||||||||
Sbjct: 1409559 gcgatgagcgcgcaggtgcg 1409540



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 136     tcgtcaacctcaccgccggc 155
               ||||||||||||||||||||
Sbjct: 5509973 tcgtcaacctcaccgccggc 5509992



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 139     tcaacctcaccgccggctcg 158
               ||||||||||||||||||||
Sbjct: 3431388 tcaacctcaccgccggctcg 3431407



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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 192     gagtacggcgtggtgctcggcggg 215
               ||||||||||||||| ||||||||
Sbjct: 1739818 gagtacggcgtggtgatcggcggg 1739841



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    tcgtcaacctcaccgccggc 155
              ||||||||||||||||||||
Sbjct: 364293 tcgtcaacctcaccgccggc 364274



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>dbj|AB059428.1| Mus musculus MACS mRNA for medium-chain acyl-CoA synthetase,
           complete cds
          Length = 2045

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 468 gaattgagggaggtggtgga 487
           ||||||||||||||||||||
Sbjct: 970 gaattgagggaggtggtgga 951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,470,922
Number of Sequences: 3902068
Number of extensions: 2470922
Number of successful extensions: 52253
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51394
Number of HSP's gapped (non-prelim): 854
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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