ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18o16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 698 bits (352), Expect = 0.0 Identities = 563/632 (89%), Gaps = 1/632 (0%) Strand = Plus / Minus Query: 8 aacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttccct 67 ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct: 39366154 aacaagtatcttatcaatggccatcttgcacaaccttcccgagtgcagactcttttccat 39366095 Query: 68 cc-gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaa 126 | |||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct: 39366094 tctgtgcagctaaatgtgaacaatccccattttctaattatgcaaggacgcataacaaaa 39366035 Query: 127 gtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaagg 186 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 39366034 gtgctgaacatgaagcctccagaaattctctccatgttggaagaggcagcaggtacaagg 39365975 Query: 187 atgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaagtc 246 ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 39365974 atgtatgaaatgaagaaggaagctgctctgaaaacactcgagaagaagcagaataaagtg 39365915 Query: 247 gaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaaaa 306 || ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 39365914 gatgagattaataaactccttgatgaagaaatccttcctgcattagagaagcttaggaaa 39365855 Query: 307 gagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaaga 366 ||| |||| |||||||||||||||||||||| || |||| ||||||| || |||||| Sbjct: 39365854 gagcggtgtcagtacatgaaatgggccaatggcaatgctgacttagatcggctcaaaaga 39365795 Query: 367 ttctgtattgcatatgagtttgttcaagctgagagagtgcgagaaagtgcactcagtgat 426 ||||| || || ||||||||||||||||||||| ||||| |||| ||||||||| |||| Sbjct: 39365794 ttctgcatcgcttatgagtttgttcaagctgagcgagtgagagatggtgcactcaatgat 39365735 Query: 427 gtcaaacaaatccagggaaagattgttgaactggatgaaagcacagaaaagctaaaagca 486 |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct: 39365734 gtcaaacaaatcagggcaaagattgttgagctggatgaaagcacagagaagctaaaatca 39365675 Query: 487 gacatagatgaaatggacaaaaacatagctaccttaactgctgaaaaagaagccaaacta 546 || ||| | |||||||| || |||||| ||| ||| |||||||||||||||| |||||| Sbjct: 39365674 gagatacaggaaatggataagaacatatctaacttggctgctgaaaaagaagctaaacta 39365615 Query: 547 ggcggtgagttgaaggttttgtcagagaaagtggataagctctcgcatgcacttattaag 606 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 39365614 ggtggtgagatgaaaactttgtcagagaaagtggataagctctcacatgcacttatcaag 39365555 Query: 607 gaaacttctctgatggataatcaagaggaaac 638 ||||||||| ||||| |||||||||||||||| Sbjct: 39365554 gaaacttctgtgatgaataatcaagaggaaac 39365523 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 ctgctgaaaaagaagccaaactag 547 |||||||||||||| ||||||||| Sbjct: 5256429 ctgctgaaaaagaacccaaactag 5256452
>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551C06 Length = 149829 Score = 698 bits (352), Expect = 0.0 Identities = 563/632 (89%), Gaps = 1/632 (0%) Strand = Plus / Minus Query: 8 aacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttccct 67 ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct: 147400 aacaagtatcttatcaatggccatcttgcacaaccttcccgagtgcagactcttttccat 147341 Query: 68 cc-gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaa 126 | |||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct: 147340 tctgtgcagctaaatgtgaacaatccccattttctaattatgcaaggacgcataacaaaa 147281 Query: 127 gtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaagg 186 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 147280 gtgctgaacatgaagcctccagaaattctctccatgttggaagaggcagcaggtacaagg 147221 Query: 187 atgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaagtc 246 ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 147220 atgtatgaaatgaagaaggaagctgctctgaaaacactcgagaagaagcagaataaagtg 147161 Query: 247 gaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaaaa 306 || ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 147160 gatgagattaataaactccttgatgaagaaatccttcctgcattagagaagcttaggaaa 147101 Query: 307 gagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaaga 366 ||| |||| |||||||||||||||||||||| || |||| ||||||| || |||||| Sbjct: 147100 gagcggtgtcagtacatgaaatgggccaatggcaatgctgacttagatcggctcaaaaga 147041 Query: 367 ttctgtattgcatatgagtttgttcaagctgagagagtgcgagaaagtgcactcagtgat 426 ||||| || || ||||||||||||||||||||| ||||| |||| ||||||||| |||| Sbjct: 147040 ttctgcatcgcttatgagtttgttcaagctgagcgagtgagagatggtgcactcaatgat 146981 Query: 427 gtcaaacaaatccagggaaagattgttgaactggatgaaagcacagaaaagctaaaagca 486 |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct: 146980 gtcaaacaaatcagggcaaagattgttgagctggatgaaagcacagagaagctaaaatca 146921 Query: 487 gacatagatgaaatggacaaaaacatagctaccttaactgctgaaaaagaagccaaacta 546 || ||| | |||||||| || |||||| ||| ||| |||||||||||||||| |||||| Sbjct: 146920 gagatacaggaaatggataagaacatatctaacttggctgctgaaaaagaagctaaacta 146861 Query: 547 ggcggtgagttgaaggttttgtcagagaaagtggataagctctcgcatgcacttattaag 606 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 146860 ggtggtgagatgaaaactttgtcagagaaagtggataagctctcacatgcacttatcaag 146801 Query: 607 gaaacttctctgatggataatcaagaggaaac 638 ||||||||| ||||| |||||||||||||||| Sbjct: 146800 gaaacttctgtgatgaataatcaagaggaaac 146769
>dbj|AP006838.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa013M08 Length = 36891 Score = 698 bits (352), Expect = 0.0 Identities = 563/632 (89%), Gaps = 1/632 (0%) Strand = Plus / Minus Query: 8 aacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttccct 67 ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct: 1895 aacaagtatcttatcaatggccatcttgcacaaccttcccgagtgcagactcttttccat 1836 Query: 68 cc-gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaa 126 | |||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct: 1835 tctgtgcagctaaatgtgaacaatccccattttctaattatgcaaggacgcataacaaaa 1776 Query: 127 gtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaagg 186 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 1775 gtgctgaacatgaagcctccagaaattctctccatgttggaagaggcagcaggtacaagg 1716 Query: 187 atgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaagtc 246 ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 1715 atgtatgaaatgaagaaggaagctgctctgaaaacactcgagaagaagcagaataaagtg 1656 Query: 247 gaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaaaa 306 || ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 1655 gatgagattaataaactccttgatgaagaaatccttcctgcattagagaagcttaggaaa 1596 Query: 307 gagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaaga 366 ||| |||| |||||||||||||||||||||| || |||| ||||||| || |||||| Sbjct: 1595 gagcggtgtcagtacatgaaatgggccaatggcaatgctgacttagatcggctcaaaaga 1536 Query: 367 ttctgtattgcatatgagtttgttcaagctgagagagtgcgagaaagtgcactcagtgat 426 ||||| || || ||||||||||||||||||||| ||||| |||| ||||||||| |||| Sbjct: 1535 ttctgcatcgcttatgagtttgttcaagctgagcgagtgagagatggtgcactcaatgat 1476 Query: 427 gtcaaacaaatccagggaaagattgttgaactggatgaaagcacagaaaagctaaaagca 486 |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct: 1475 gtcaaacaaatcagggcaaagattgttgagctggatgaaagcacagagaagctaaaatca 1416 Query: 487 gacatagatgaaatggacaaaaacatagctaccttaactgctgaaaaagaagccaaacta 546 || ||| | |||||||| || |||||| ||| ||| |||||||||||||||| |||||| Sbjct: 1415 gagatacaggaaatggataagaacatatctaacttggctgctgaaaaagaagctaaacta 1356 Query: 547 ggcggtgagttgaaggttttgtcagagaaagtggataagctctcgcatgcacttattaag 606 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 1355 ggtggtgagatgaaaactttgtcagagaaagtggataagctctcacatgcacttatcaag 1296 Query: 607 gaaacttctctgatggataatcaagaggaaac 638 ||||||||| ||||| |||||||||||||||| Sbjct: 1295 gaaacttctgtgatgaataatcaagaggaaac 1264
>dbj|AK103514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033131G15, full insert sequence Length = 4093 Score = 682 bits (344), Expect = 0.0 Identities = 562/632 (88%), Gaps = 2/632 (0%) Strand = Plus / Plus Query: 8 aacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttccct 67 ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct: 463 aacaagtatcttatcaatggccatcttgcacaaccttcccgagtgcagactcttttccat 522 Query: 68 cc-gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaa 126 | |||||||| || |||||||||||||||||||||||||||||||| || || || ||| Sbjct: 523 tctgtgcagctaaatgtgaacaatccccattttctaattatgcaaggacgcataacaaaa 582 Query: 127 gtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaagg 186 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 583 gtgctgaacatgaagcctccagaaattctctccatgttggaagaggcagcaggtacaagg 642 Query: 187 atgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaagtc 246 ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 643 atgtatgaaatgaagaaggaagctgctctgaaaacactcgagaagaagcagaataaagtg 702 Query: 247 gaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaaaa 306 || ||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 703 gatgagattaataaactccttgatgaagaaatccttcctgcattagagaagcttaggaaa 762 Query: 307 gagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaaga 366 ||| |||| |||||||||||||||||||||| || |||| ||||||| || |||||| Sbjct: 763 gagcggtgtcagtacatgaaatgggccaatggcaatgctgacttagatcggctcaaaaga 822 Query: 367 ttctgtattgcatatgagtttgttcaagctgagagagtgcgagaaagtgcactcagtgat 426 ||||| || || ||||||||||||||||||||| ||||| |||| ||||||||| |||| Sbjct: 823 ttctgcatcgcttatgagtttgttcaagctgagcgagtgagagatggtgcactcaatgat 882 Query: 427 gtcaaacaaatccagggaaagattgttgaactggatgaaagcacagaaaagctaaaagca 486 |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct: 883 gtcaaacaaatcagggcaaagattgttgagctggatgaaagcacagagaagctaaaatca 942 Query: 487 gacatagatgaaatggacaaaaacatagctaccttaactgctgaaaaagaagccaaacta 546 || ||| | |||||||| || |||||| ||| ||| |||||| ||||||||| |||||| Sbjct: 943 gagatacaggaaatggataagaacatatctaacttggctgctg-aaaagaagctaaacta 1001 Query: 547 ggcggtgagttgaaggttttgtcagagaaagtggataagctctcgcatgcacttattaag 606 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 1002 ggtggtgagatgaaaactttgtcagagaaagtggataagctctcacatgcacttatcaag 1061 Query: 607 gaaacttctctgatggataatcaagaggaaac 638 ||||||||| ||||| |||||||||||||||| Sbjct: 1062 gaaacttctgtgatgaataatcaagaggaaac 1093
>emb|AJ535210.1|OSA535210 Oryza sativa mRNA for SMC2 protein Length = 3528 Score = 674 bits (340), Expect = 0.0 Identities = 560/632 (88%), Gaps = 1/632 (0%) Strand = Plus / Plus Query: 8 aacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttccct 67 ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||||||| | Sbjct: 337 aacaagtatcttatcaatggccatcttgcacaaccttcccgagtgcagactcttttccat 396 Query: 68 cc-gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaa 126 | |||||||| || ||||||||||||||||||||||||||||| || || || || ||| Sbjct: 397 tctgtgcagctaaatgtgaacaatccccattttctaattatgcagggacgcataacaaaa 456 Query: 127 gtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaagg 186 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 457 gtgctgaacatgaagcctccagaaattctctccatgttggaagaggcagcaggtacaagg 516 Query: 187 atgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaagtc 246 ||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||| Sbjct: 517 atgtatgaaatgaagaaggaagctgctctgaaaacactcgagaagaagcagaataaagtg 576 Query: 247 gaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaaaa 306 || ||||| ||||||||||||||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 577 gatgagattaataaacttcttgatgaagaaatccttcctgcattagagaagcttaggaaa 636 Query: 307 gagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaaga 366 ||| |||| ||||||||||||||||||| | | |||| ||||||| || |||||| Sbjct: 637 gagcggtgtcagtacatgaaatgggccatggcacatgctgacttagatcggctcaaaaga 696 Query: 367 ttctgtattgcatatgagtttgttcaagctgagagagtgcgagaaagtgcactcagtgat 426 ||||| || || ||||||||||||||||||||| ||||| |||| ||||||||| |||| Sbjct: 697 ttctgcatcgcttatgagtttgttcaagctgagcgagtgagagatggtgcactcaatgat 756 Query: 427 gtcaaacaaatccagggaaagattgttgaactggatgaaagcacagaaaagctaaaagca 486 |||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| || Sbjct: 757 gtcaaacaaatcagggcaaagattgttgagctggatgaaagcacagagaagctaaaatca 816 Query: 487 gacatagatgaaatggacaaaaacatagctaccttaactgctgaaaaagaagccaaacta 546 || ||| | |||||||| || |||||| ||| ||| |||||||||||||||| |||||| Sbjct: 817 gagatacaggaaatggataagaacatatctaacttggctgctgaaaaagaagctaaacta 876 Query: 547 ggcggtgagttgaaggttttgtcagagaaagtggataagctctcgcatgcacttattaag 606 || |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||| Sbjct: 877 ggtggtgagatgaaaactttgtcagagaaagtggataagctctcacatgcacttatcaag 936 Query: 607 gaaacttctctgatggataatcaagaggaaac 638 ||||||||| ||||| |||||||||||||||| Sbjct: 937 gaaacttctgtgatgaataatcaagaggaaac 968
>gb|AY112633.1| Zea mays CL848_1 mRNA sequence Length = 4094 Score = 456 bits (230), Expect = e-125 Identities = 363/406 (89%), Gaps = 1/406 (0%) Strand = Plus / Plus Query: 6 ggaacaaataccttataaatggccatcttgcacagccttcccgggtgcagactcttttcc 65 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct: 460 ggaacaaataccttatcaatggccatcttgcacaaccttcccgggtgcagacccttttcc 519 Query: 66 -ctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacga 124 ||| ||||||||||| || |||||||| ||||||||||||||||||||||| || || | Sbjct: 520 actcagtgcagcttaatgtaaacaatcctcattttctaattatgcaagggcgcataacaa 579 Query: 125 aagtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaa 184 ||||||||||||||||||||||||||||| | || ||||| |||||||||||||| |||| Sbjct: 580 aagtgctgaacatgaagcctccagaaattttgtcaatgttagaagaggcagcaggtacaa 639 Query: 185 ggatgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaataaag 244 | ||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct: 640 gaatgtacgaaatgaagaaagaatctgctcttaagacacttgaaaagaagcagaataaag 699 Query: 245 tcgaggagatcaataaacttcttgatgatgaaatccttcctgcattagagaaacttagaa 304 | || ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||| Sbjct: 700 ttgatgagattaataaactccttgatgttgaaatcctccctgcactagagaaacttagaa 759 Query: 305 aagagaggtgccagtacatgaaatgggccaatgataacactgaactagatcgacttaaaa 364 ||||| |||| || ||||||||||||||||||| || ||||||| ||| | || |||| Sbjct: 760 aagagcggtgtcaatacatgaaatgggccaatggcaatgctgaactggataggctcaaaa 819 Query: 365 gattctgtattgcatatgagtttgttcaagctgagagagtgcgaga 410 |||| |||||||| ||||| |||||||| ||||||||||||||||| Sbjct: 820 gattttgtattgcctatgactttgttcaggctgagagagtgcgaga 865 Score = 121 bits (61), Expect = 3e-24 Identities = 155/188 (82%) Strand = Plus / Plus Query: 451 gttgaactggatgaaagcacagaaaagctaaaagcagacatagatgaaatggacaaaaac 510 ||||| |||||||||| |||||||| ||||||||| ||| | ||||||||||| ||| Sbjct: 906 gttgagctggatgaaactacagaaaacataaaagcagctatacaagaaatggacaataac 965 Query: 511 atagctaccttaactgctgaaaaagaagccaaactaggcggtgagttgaaggttttgtca 570 || ||||||| |||||| ||||| ||| |||| ||||| |||||||| ||||| Sbjct: 966 atttctaccttggctgctgnnnnngaagctaaagtaggtggtgaaatgaaggttctgtca 1025 Query: 571 gagaaagtggataagctctcgcatgcacttattaaggaaacttctctgatggataatcaa 630 || ||||||||||| || || |||| |||||| |||||||||||| ||||| |||||||| Sbjct: 1026 gacaaagtggataaactatcacatgtacttatcaaggaaacttctgtgatgaataatcaa 1085 Query: 631 gaggaaac 638 |||||||| Sbjct: 1086 gaggaaac 1093
>ref|NM_125635.2| Arabidopsis thaliana SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) AT5G62410 (SMC2) mRNA, complete cds Length = 3763 Score = 91.7 bits (46), Expect = 3e-15 Identities = 175/218 (80%) Strand = Plus / Plus Query: 61 tttccctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtatt 120 |||| ||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 437 tttcactcggtgcagcttaatgtcaacaatccacactttctcatcatgcaagggcgtatc 496 Query: 121 acgaaagtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggc 180 || ||||| |||| ||||||||||| || || | |||||| | ||||| || || || Sbjct: 497 accaaagttttgaatatgaagcctccggagatattgtccatgcttgaagaagctgctgga 556 Query: 181 acaaggatgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaat 240 |||||||||||||||| ||||| || |||| | ||||| ||||| || ||||||| Sbjct: 557 acaaggatgtatgaaaacaagaaagaggctgcattgaaaacgcttgaaaaaaagcagacc 616 Query: 241 aaagtcgaggagatcaataaacttcttgatgatgaaat 278 || || || ||||| ||||| ||||||||| ||||||| Sbjct: 617 aaggttgatgagattaataagcttcttgatcatgaaat 654 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 316 cagtacatgaaatgggccaatgataacactgaactagatcgacttaaaagattctgtatt 375 ||||||||| | ||||| |||| |||| | || ||||||||||| | |||||||||||| Sbjct: 692 cagtacatgcagtgggctaatggtaacgcggagctagatcgactaaggagattctgtatt 751 Query: 376 gcatatgagtttgttcaagctgaga 400 || | ||| | ||||||||| |||| Sbjct: 752 gcctttgaatatgttcaagcggaga 776
>gb|AF306547.1| Arabidopsis thaliana SMC2-1 (SMC2) mRNA, complete cds Length = 3528 Score = 91.7 bits (46), Expect = 3e-15 Identities = 175/218 (80%) Strand = Plus / Plus Query: 61 tttccctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtatt 120 |||| ||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 391 tttcactcggtgcagcttaatgtcaacaatccacactttctcatcatgcaagggcgtatc 450 Query: 121 acgaaagtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggc 180 || ||||| |||| ||||||||||| || || | |||||| | ||||| || || || Sbjct: 451 accaaagttttgaatatgaagcctccggagatattgtccatgcttgaagaagctgctgga 510 Query: 181 acaaggatgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaat 240 |||||||||||||||| ||||| || |||| | ||||| ||||| || ||||||| Sbjct: 511 acaaggatgtatgaaaacaagaaagaggctgcattgaaaacgcttgaaaaaaagcagacc 570 Query: 241 aaagtcgaggagatcaataaacttcttgatgatgaaat 278 || || || ||||| ||||| ||||||||| ||||||| Sbjct: 571 aaggttgatgagattaataagcttcttgatcatgaaat 608 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 316 cagtacatgaaatgggccaatgataacactgaactagatcgacttaaaagattctgtatt 375 ||||||||| | ||||| |||| |||| | || ||||||||||| | |||||||||||| Sbjct: 646 cagtacatgcagtgggctaatggtaacgcggagctagatcgactaaggagattctgtatt 705 Query: 376 gcatatgagtttgttcaagctgaga 400 || | ||| | ||||||||| |||| Sbjct: 706 gcctttgaatatgttcaagcggaga 730
>dbj|AB019235.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMI9 Length = 81736 Score = 91.7 bits (46), Expect = 3e-15 Identities = 175/218 (80%) Strand = Plus / Plus Query: 61 tttccctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtatt 120 |||| ||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 78247 tttcactcggtgcagcttaatgtcaacaatccacactttctcatcatgcaagggcgtatc 78306 Query: 121 acgaaagtgctgaacatgaagcctccagaaattctttccatgttggaagaggcagcaggc 180 || ||||| |||| ||||||||||| || || | |||||| | ||||| || || || Sbjct: 78307 accaaagttttgaatatgaagcctccggagatattgtccatgcttgaagaagctgctgga 78366 Query: 181 acaaggatgtatgaaatgaagaaggaatctgctcttaaaacacttgagaagaagcagaat 240 |||||||||||||||| ||||| || |||| | ||||| ||||| || ||||||| Sbjct: 78367 acaaggatgtatgaaaacaagaaagaggctgcattgaaaacgcttgaaaaaaagcagacc 78426 Query: 241 aaagtcgaggagatcaataaacttcttgatgatgaaat 278 || || || ||||| ||||| ||||||||| ||||||| Sbjct: 78427 aaggttgatgagattaataagcttcttgatcatgaaat 78464 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 316 cagtacatgaaatgggccaatgataacactgaactagatcgacttaaaagattctgtatt 375 ||||||||| | ||||| |||| |||| | || ||||||||||| | |||||||||||| Sbjct: 78502 cagtacatgcagtgggctaatggtaacgcggagctagatcgactaaggagattctgtatt 78561 Query: 376 gcatatgagtttgttcaagctgaga 400 || | ||| | ||||||||| |||| Sbjct: 78562 gcctttgaatatgttcaagcggaga 78586
>ref|NM_114614.2| Arabidopsis thaliana ATSMC2 AT3G47460 (ATSMC2) mRNA, complete cds Length = 4091 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagt 128 ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct: 400 gtgcagcttaatgtgaacaatcctcattttctgattatgcaagggcgtattaccaaagt 458
>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8 Length = 87224 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagt 128 ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct: 86673 gtgcagcttaatgtgaacaatcctcattttctgattatgcaagggcgtattaccaaagt 86731
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 85.7 bits (43), Expect = 2e-13 Identities = 55/59 (93%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagt 128 ||||||||||| ||||||||||| |||||||| |||||||||||||||||||| ||||| Sbjct: 600 gtgcagcttaatgtgaacaatcctcattttctgattatgcaagggcgtattaccaaagt 658
>emb|AJ535204.1|AGA535204 Anopheles gambiae mRNA for SMC2 protein Length = 3564 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtg 129 |||||||| ||||||||||||||| | || || || ||||| ||||| || ||||| ||| Sbjct: 400 gtgcagctgaacgtgaacaatcccaacttcctgatcatgcaggggcgcatcacgaaggtg 459 Query: 130 ctgaacatgaagcc 143 |||||||||||||| Sbjct: 460 ctgaacatgaagcc 473
>gb|AF271730.2| Arabidopsis thaliana SMC2-like condensin (TITAN3) gene, complete cds Length = 9413 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 61 tttccctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtatt 120 |||| ||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 2080 tttcactcggtgcagcttaatgtcaacaatccacactttctcatcatgcaagggcgtatc 2139 Query: 121 acgaaagtgctgaacatgaagcctcc 146 || ||||| |||| ||||||||||| Sbjct: 2140 accaaagttttgaatatgaagcctcc 2165 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 316 cagtacatgaaatgggccaatgataacactgaactagatcgacttaaaagattctgtatt 375 ||||||||| | ||||| |||| |||| | || ||||||||||| | |||||||||||| Sbjct: 2335 cagtacatgcagtgggctaatggtaacgcggagctagatcgactaaggagattctgtatt 2394 Query: 376 gcatatgagtttgttcaagctgaga 400 || | ||| | ||||||||| |||| Sbjct: 2395 gcctttgaatatgttcaagcggaga 2419
>gb|AF271731.1| Arabidopsis thaliana SMC2-like condensin (TITAN3) mRNA, complete cds Length = 3769 Score = 67.9 bits (34), Expect = 4e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 61 tttccctccgtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtatt 120 |||| ||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 437 tttcactcggtgcagcttaatgtcaacaatccacactttctcatcatgcaagggcgtatc 496 Query: 121 acgaaagtgctgaacatgaagcctcc 146 || ||||| |||| ||||||||||| Sbjct: 497 accaaagttttgaatatgaagcctcc 522 Score = 50.1 bits (25), Expect = 0.009 Identities = 70/85 (82%) Strand = Plus / Plus Query: 316 cagtacatgaaatgggccaatgataacactgaactagatcgacttaaaagattctgtatt 375 ||||||||| | ||||| |||| |||| | || ||||||||||| | |||||||||||| Sbjct: 692 cagtacatgcagtgggctaatggtaacgcggagctagatcgactaaggagattctgtatt 751 Query: 376 gcatatgagtttgttcaagctgaga 400 || | ||| | ||||||||| |||| Sbjct: 752 gcctttgaatatgttcaagcggaga 776
>ref|XM_554796.1| Anopheles gambiae str. PEST ENSANGP00000029709 (ENSANGG00000009650), partial mRNA Length = 3564 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtg 129 |||||||| ||||||||||||||| | || || || ||||| ||||| || ||||| ||| Sbjct: 400 gtgcagctgaacgtgaacaatcccaacttcctgatcatgcaggggcgcatcacgaaggtg 459 Query: 130 ctgaacatgaagcc 143 |||||||||||||| Sbjct: 460 ctgaacatgaagcc 473
>ref|XM_317878.2| Anopheles gambiae str. PEST ENSANGP00000012139 (ENSANGG00000009650), partial mRNA Length = 3565 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 70 gtgcagcttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtg 129 |||||||| ||||||||||||||| | || || || ||||| ||||| || ||||| ||| Sbjct: 401 gtgcagctgaacgtgaacaatcccaacttcctgatcatgcaggggcgcatcacgaaggtg 460 Query: 130 ctgaacatgaagcc 143 |||||||||||||| Sbjct: 461 ctgaacatgaagcc 474
>emb|Z46794.1|CER06F6 Caenorhabditis elegans Cosmid R06F6, complete sequence Length = 41452 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 79 aacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatg 138 |||||||| ||||| |||||||| || |||||||| |||||||| | ||||| |||||| Sbjct: 39802 aacgtgaataatccacattttctcatcatgcaaggtcgtattactacggtgctaaacatg 39861 Query: 139 aagcc 143 ||||| Sbjct: 39862 aagcc 39866
>ref|NM_063930.3| Caenorhabditis elegans MItosis and X associated family member (mix-1) (mix-1) mRNA, complete cds Length = 4012 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 79 aacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatg 138 |||||||| ||||| |||||||| || |||||||| |||||||| | ||||| |||||| Sbjct: 501 aacgtgaataatccacattttctcatcatgcaaggtcgtattactacggtgctaaacatg 560 Query: 139 aagcc 143 ||||| Sbjct: 561 aagcc 565
>gb|U96387.1|CEU96387 Caenorhabditis elegans mitotic chromosome and X-chromosome associated MIX-1 protein (mix-1) mRNA, complete cds Length = 3735 Score = 58.0 bits (29), Expect = 4e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 79 aacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatg 138 |||||||| ||||| |||||||| || |||||||| |||||||| | ||||| |||||| Sbjct: 412 aacgtgaataatccacattttctcatcatgcaaggtcgtattactacggtgctaaacatg 471 Query: 139 aagcc 143 ||||| Sbjct: 472 aagcc 476
>ref|XM_585705.2| PREDICTED: Bos taurus similar to Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog) (LOC539217), mRNA Length = 5399 Score = 56.0 bits (28), Expect = 1e-04 Identities = 97/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| |||||| |||| Sbjct: 451 cttaatgttaacaaccctcactttctcatcatgcagggccgaattaccaaagtgatgaat 510 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 511 atgaaacctccagagattttgtccatgatagaagaagcagctggaaccaggatgtatgaa 570
>ref|XM_633436.1| Dictyostelium discoideum structural maintenance of chromosome protein (DDB0219933), partial mRNA Length = 3555 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Plus Query: 88 aatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatgaagcctcca 147 ||||| |||||| ||||||||||||| |||||||| ||||| |||| ||||| || ||| Sbjct: 418 aatccacattttttaattatgcaaggtcgtattacaaaagtattgaatatgaaaccacca 477 Query: 148 ga 149 || Sbjct: 478 ga 479
>ref|NM_001032624.1| Takifugu rubripes SMC2 protein (smc2), mRNA Length = 3603 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Plus Query: 79 aacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatg 138 ||||| ||||| |||||||| || || ||||| ||| | || || ||||| || |||||| Sbjct: 409 aacgtcaacaacccccatttcctcatcatgcaggggaggatcaccaaagttctcaacatg 468 Query: 139 aagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| ||||| || ||| ||||| | ||||| ||||| || || || ||||||||| Sbjct: 469 aagccaccagagatccttgccatgattgaagaagcagcggggacgagaatgtatgaa 525
>emb|AJ534333.2|TRU534333 Takifugu rubripes mRNA for SMC2 protein Length = 3603 Score = 50.1 bits (25), Expect = 0.009 Identities = 94/117 (80%) Strand = Plus / Plus Query: 79 aacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatg 138 ||||| ||||| |||||||| || || ||||| ||| | || || ||||| || |||||| Sbjct: 409 aacgtcaacaacccccatttcctcatcatgcaggggaggatcaccaaagttctcaacatg 468 Query: 139 aagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| ||||| || ||| ||||| | ||||| ||||| || || || ||||||||| Sbjct: 469 aagccaccagagatccttgccatgattgaagaagcagcggggacgagaatgtatgaa 525
>gb|BC055081.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:6708852), partial cds Length = 900 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 244 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 303 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 304 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 363
>gb|BC071750.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:6654356), partial cds Length = 1420 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 756 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 815 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 816 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 875
>gb|BC061906.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:4363420), partial cds Length = 874 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 642 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 701 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 702 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 761
>gb|BC107891.1| Homo sapiens cDNA clone IMAGE:6622257, partial cds Length = 1197 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 730 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 789 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 790 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 849
>ref|XM_862317.1| PREDICTED: Canis familiaris similar to Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog), transcript variant 2 (LOC481637), mRNA Length = 846 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 406 cttaatgtaaacaaccctcactttctcatcatgcagggccgaattaccaaagtattgaat 465 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 466 atgaaacctccagagattttgtccatgatagaagaagcagctggaaccaggatgtatgaa 525
>ref|XM_538759.2| PREDICTED: Canis familiaris similar to Structural maintenance of chromosome 2-like 1 protein (Chromosome-associated protein E) (hCAP-E) (XCAP-E homolog), transcript variant 1 (LOC481637), mRNA Length = 3588 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 406 cttaatgtaaacaaccctcactttctcatcatgcagggccgaattaccaaagtattgaat 465 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 466 atgaaacctccagagattttgtccatgatagaagaagcagctggaaccaggatgtatgaa 525
>gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete sequence Length = 110520 Score = 48.1 bits (24), Expect = 0.036 Identities = 24/24 (100%) Strand = Plus / Minus Query: 444 aaagattgttgaactggatgaaag 467 |||||||||||||||||||||||| Sbjct: 57808 aaagattgttgaactggatgaaag 57785
>gb|BC032705.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:5498410), containing frame-shift errors Length = 2681 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 743 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 802 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 803 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 862
>gb|BC017845.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:4699860), containing frame-shift errors Length = 1085 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 624 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 683 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 684 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 743
>gb|BC003396.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast), mRNA (cDNA clone IMAGE:3448562), containing frame-shift errors Length = 891 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 429 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 488 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 489 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 548
>emb|AL833191.1|HSM804502 Homo sapiens mRNA; cDNA DKFZp667M185 (from clone DKFZp667M185) Length = 6002 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 694 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 753 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 754 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 813
>dbj|AK001485.1| Homo sapiens cDNA FLJ10623 fis, clone NT2RP2005520, highly similar to Homo sapiens chromosome-associated protein-E mRNA Length = 4266 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 742 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 801 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 802 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 861
>dbj|AB168882.1| Macaca fascicularis testis cDNA, clone: QtsA-15550, similar to human SMC2 structural maintenance of chromosomes 2-like 1(yeast) (SMC2L1), mRNA, RefSeq: NM_006444.1 Length = 3977 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 715 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 774 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 775 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 834
>gb|AY739716.1| Homo sapiens chromosome-associated protein E mRNA, complete cds Length = 2474 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 586 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 645 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 646 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 705
>tpe|BN000163.1|HSA000163 TPA: TPA_inf: Homo sapiens mRNA for SMC2 protein Length = 3594 Score = 48.1 bits (24), Expect = 0.036 Identities = 96/120 (80%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 406 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 465 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| |||||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 466 atgaaacctccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 525
>ref|XM_709421.1| Candida albicans SC5314 putative nuclear condensin complex SMC ATPase (CaO19.11106), mRNA Length = 3516 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 88 aatccccattttctaattatgcaaggg 114 |||||| |||||||||||||||||||| Sbjct: 418 aatcccaattttctaattatgcaaggg 444
>ref|XM_709372.1| Candida albicans SC5314 putative nuclear condensin complex SMC ATPase (CaO19.3623), mRNA Length = 3516 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 88 aatccccattttctaattatgcaaggg 114 |||||| |||||||||||||||||||| Sbjct: 418 aatcccaattttctaattatgcaaggg 444
>gb|BC044141.1| Danio rerio zgc:55326, mRNA (cDNA clone MGC:55326 IMAGE:2600884), complete cds Length = 2467 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 133 aacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgta 191 |||||||||||||| || ||| | ||||| | || ||||||||||| ||||||||||| Sbjct: 559 aacatgaagcctcctgagattttggccatgattgaggaggcagcaggtacaaggatgta 617
>emb|AL158210.12| Human DNA sequence from clone RP11-554I8 on chromosome 10 Contains two novel genes, complete sequence Length = 134826 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 156 ttccatgttggaagaggcagcag 178 ||||||||||||||||||||||| Sbjct: 110015 ttccatgttggaagaggcagcag 110037
>ref|XM_686996.1| PREDICTED: Danio rerio similar to SMC2 protein (LOC563640), mRNA Length = 4062 Score = 46.1 bits (23), Expect = 0.14 Identities = 50/59 (84%) Strand = Plus / Plus Query: 133 aacatgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgta 191 |||||||||||||| || ||| | ||||| | || ||||||||||| ||||||||||| Sbjct: 553 aacatgaagcctcctgagattttggccatgattgaggaggcagcaggtacaaggatgta 611
>gb|U13674.1|XLU13674 Xenopus laevis (XCAP-E) mRNA, complete cds Length = 4100 Score = 46.1 bits (23), Expect = 0.14 Identities = 89/111 (80%) Strand = Plus / Plus Query: 85 aacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatgaagcct 144 |||||||| |||||||| || ||||| || || || || ||||| |||| |||||||| Sbjct: 463 aacaatcctcattttctcatcatgcagggtcgaataaccaaagtcttgaatatgaagcca 522 Query: 145 ccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 || || ||||| | ||| | ||||| ||||| || ||||||||||||||| Sbjct: 523 cctgagattctagctatgattgaagaagcagctggtacaaggatgtatgaa 573
>emb|BX005351.7| Zebrafish DNA sequence from clone CH211-266A16 in linkage group 17, complete sequence Length = 167042 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 423 tgatgtcaaacaaatccaggga 444 |||||||||||||||||||||| Sbjct: 56274 tgatgtcaaacaaatccaggga 56253
>ref|XM_418380.1| PREDICTED: Gallus gallus similar to Zinc finger protein ZFPM2 (Zinc finger protein multitype 2) (Friend of GATA protein 2) (FOG-2) (hFOG-2) (LOC420269), mRNA Length = 3924 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 443 gaaagattgttgaactggatg 463 ||||||||||||||||||||| Sbjct: 3863 gaaagattgttgaactggatg 3843
>ref|XM_648546.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (76.t00002) partial mRNA Length = 1806 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 85 aacaatccccattttctaatt 105 ||||||||||||||||||||| Sbjct: 973 aacaatccccattttctaatt 953
>gb|AC008665.6| Homo sapiens chromosome 5 clone CTB-34L8, complete sequence Length = 133329 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 gacatagatgaaatggacaaa 507 ||||||||||||||||||||| Sbjct: 109069 gacatagatgaaatggacaaa 109089
>emb|BX005093.22| Zebrafish DNA sequence from clone CH211-210G13 in linkage group 3, complete sequence Length = 155392 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ttctttccatgttggaagagg 172 ||||||||||||||||||||| Sbjct: 8061 ttctttccatgttggaagagg 8041
>ref|XM_678042.1| PREDICTED: Danio rerio similar to General control of amino acid synthesis protein 5-like 2 (Histone acetyltransferase GCN5) (mmGCN5) (LOC555517), partial mRNA Length = 1893 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ttctttccatgttggaagagg 172 ||||||||||||||||||||| Sbjct: 956 ttctttccatgttggaagagg 976
>gb|AC005703.2|AC005703 Homo sapiens chromosome 17, clone hRPK.849_N_15, complete sequence Length = 233454 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaaa 508 ||||||||||||||||||||| Sbjct: 88287 acatagatgaaatggacaaaa 88267
>dbj|AK173897.1| Ciona intestinalis cDNA, clone:ciad019b19, full insert sequence Length = 664 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 208 tctgctcttaaaacacttgag 228 ||||||||||||||||||||| Sbjct: 25 tctgctcttaaaacacttgag 5
>ref|NM_115630.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G57700 mRNA, complete cds Length = 1023 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Plus Query: 227 agaagaagcagaataaagtcgaggagatcaat 258 ||||||||||||| |||| |||||||||||| Sbjct: 23 agaagaagcagaagaaagaagaggagatcaat 54
>gb|AC132830.12| Mus musculus chromosome 1, clone RP24-566B6, complete sequence Length = 205300 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 gccatcttgcacagccttcc 46 |||||||||||||||||||| Sbjct: 152530 gccatcttgcacagccttcc 152549
>ref|XM_510868.1| PREDICTED: Pan troglodytes similar to axonemal heavy chain dynein type 3 (LOC453978), mRNA Length = 13446 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 11957 ggaaacttctctgatggata 11938
>ref|XM_510110.1| PREDICTED: Pan troglodytes similar to echinoderm microtubule associated protein like 5 (LOC453093), mRNA Length = 6060 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ttttctaattatgcaagggc 115 |||||||||||||||||||| Sbjct: 1002 ttttctaattatgcaagggc 1021
>gb|AC167244.2| Mus musculus BAC clone RP24-84C23 from chromosome 9, complete sequence Length = 235852 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctctgatggataatcaagag 633 |||||||||||||||||||| Sbjct: 189989 ctctgatggataatcaagag 189970
>gb|AC150855.6| Bos taurus BAC CH240-472P12 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 168955 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 acttaaaagattctgtattg 376 |||||||||||||||||||| Sbjct: 11677 acttaaaagattctgtattg 11658
>ref|XM_599450.2| PREDICTED: Bos taurus similar to dynein, axonemal, heavy polypeptide 3, transcript variant 1 (LOC521190), mRNA Length = 6066 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 4139 ggaaacttctctgatggata 4120
>ref|XM_875178.1| PREDICTED: Bos taurus similar to dynein, axonemal, heavy polypeptide 3, transcript variant 3 (LOC521190), mRNA Length = 6087 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 4139 ggaaacttctctgatggata 4120
>ref|XM_865078.1| PREDICTED: Bos taurus similar to dynein, axonemal, heavy polypeptide 3, transcript variant 2 (LOC521190), mRNA Length = 6447 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 4655 ggaaacttctctgatggata 4636
>gb|AC099596.6| Mus musculus chromosome 15, clone RP23-26P23, complete sequence Length = 210022 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cttataaatggccatcttgc 36 |||||||||||||||||||| Sbjct: 147922 cttataaatggccatcttgc 147903
>ref|XM_416631.1| PREDICTED: Gallus gallus similar to MGC53544 protein (LOC418417), mRNA Length = 1335 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 452 ttgaactggatgaaagcacagaaa 475 ||||||||| |||||||||||||| Sbjct: 928 ttgaactgggtgaaagcacagaaa 951
>ref|NM_183387.1| Homo sapiens echinoderm microtubule associated protein like 5 (EML5), mRNA Length = 7091 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ttttctaattatgcaagggc 115 |||||||||||||||||||| Sbjct: 1134 ttttctaattatgcaagggc 1153
>gb|AC102554.7| Mus musculus chromosome 9, clone RP23-159E10, complete sequence Length = 197397 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttccatgttggaagaggca 174 |||||||||||||||||||| Sbjct: 154983 tttccatgttggaagaggca 154964
>gb|AC114411.24| Mus musculus chromosome 5, clone RP23-162F3, complete sequence Length = 208432 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 129177 acatagatgaaatggacaaa 129158
>ref|XM_991299.1| PREDICTED: Mus musculus dynein, axonemal, heavy chain 3 (Dnahc3), mRNA Length = 6042 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 4496 ggaaacttctctgatggata 4477
>ref|XM_981284.1| PREDICTED: Mus musculus dynein, axonemal, heavy chain 3 (Dnahc3), mRNA Length = 12335 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 10800 ggaaacttctctgatggata 10781
>ref|XM_355934.5| PREDICTED: Mus musculus dynein, axonemal, heavy chain 3 (Dnahc3), mRNA Length = 12334 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 10799 ggaaacttctctgatggata 10780
>emb|CT010514.9| Mouse DNA sequence from clone RP23-192H2 on chromosome 9, complete sequence Length = 216181 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttccatgttggaagaggca 174 |||||||||||||||||||| Sbjct: 83716 tttccatgttggaagaggca 83697
>gb|AC002394.1|HUAC002394 Human Chromosome 16 BAC clone CIT987SK-A-211C6, complete sequence Length = 107910 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 100277 ggaaacttctctgatggata 100296
>gb|AC104964.12| Homo sapiens chromosome 8, clone RP11-981G7, complete sequence Length = 212226 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gccaatgataacactgaact 350 |||||||||||||||||||| Sbjct: 185741 gccaatgataacactgaact 185760
>gb|AC131702.3| Mus musculus BAC clone RP24-177J5 from chromosome 7, complete sequence Length = 154632 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 62479 ggaaacttctctgatggata 62460
>gb|AC125222.4| Mus musculus BAC clone RP23-83G5 from 8, complete sequence Length = 177435 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 151953 acatagatgaaatggacaaa 151934
>gb|AC118033.7| Mus musculus chromosome 14, clone RP23-472J4, complete sequence Length = 178111 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 atgtatgaaatgaagaagga 206 |||||||||||||||||||| Sbjct: 102198 atgtatgaaatgaagaagga 102179
>ref|XM_536367.2| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 1 (LOC479225), mRNA Length = 3673 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2517 aactgctgaaaaagaagcca 2536
>ref|XM_854953.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 10 (LOC479225), mRNA Length = 3691 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2535 aactgctgaaaaagaagcca 2554
>ref|XM_854913.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 9 (LOC479225), mRNA Length = 3615 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2459 aactgctgaaaaagaagcca 2478
>ref|XM_854875.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 8 (LOC479225), mRNA Length = 3673 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2517 aactgctgaaaaagaagcca 2536
>ref|XM_854840.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 7 (LOC479225), mRNA Length = 3586 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2430 aactgctgaaaaagaagcca 2449
>ref|XM_854769.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 5 (LOC479225), mRNA Length = 1186 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 113 aactgctgaaaaagaagcca 132
>ref|XM_844715.1| PREDICTED: Canis familiaris similar to hect domain and RLD 4 isoform a, transcript variant 2 (LOC479225), mRNA Length = 3697 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 2541 aactgctgaaaaagaagcca 2560
>emb|CR677922.2|CNS0FM1M Tetraodon nigroviridis full-length cDNA Length = 2002 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 140 agcctccagaaattctttccatgt 163 ||||||||||||| |||||||||| Sbjct: 214 agcctccagaaatcctttccatgt 237
>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel pseudogene, complete sequence Length = 204235 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gaaatgaagaaggaatctgc 212 |||||||||||||||||||| Sbjct: 99755 gaaatgaagaaggaatctgc 99736
>ref|XM_505843.1| Yarrowia lipolytica CLIB122, YALI0F24783g predicted mRNA Length = 3519 Score = 40.1 bits (20), Expect = 8.8 Identities = 50/60 (83%) Strand = Plus / Plus Query: 85 aacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatgaagcct 144 ||||||||| | ||||| || ||||| || || || || ||||| ||||||||||||||| Sbjct: 415 aacaatcccaactttctgatcatgcagggtcgaatcaccaaagtactgaacatgaagcct 474
>emb|AL591979.1| Listeria monocytogenes strain EGD, complete genome, segment 7/12 Length = 240050 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 gaaatccttcctgcattagagaaa 297 ||||||||||||||||| |||||| Sbjct: 198372 gaaatccttcctgcattcgagaaa 198349
>emb|AL596169.1| Listeria innocua Clip11262 complete genome, segment 7/12 Length = 239050 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 274 gaaatccttcctgcattagagaaa 297 ||||||||||||||||| |||||| Sbjct: 61847 gaaatccttcctgcattcgagaaa 61824
>emb|AL591982.1| Listeria monocytogenes strain EGD, complete genome, segment 10/12 Length = 295050 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 526 gctgaaaaagaagccaaact 545 |||||||||||||||||||| Sbjct: 499 gctgaaaaagaagccaaact 480
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8 Length = 94378 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 227 agaagaagcagaataaagtcgaggagatcaat 258 ||||||||||||| |||| |||||||||||| Sbjct: 25110 agaagaagcagaagaaagaagaggagatcaat 25079
>gb|AC162385.4| Mus musculus 10 BAC RP24-397D18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202541 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 acttaaaagattctgtattg 376 |||||||||||||||||||| Sbjct: 99205 acttaaaagattctgtattg 99186
>emb|AL645908.9| Mouse DNA sequence from clone RP23-24A24 on chromosome 11, complete sequence Length = 208214 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cttgagaagaagcagaataa 242 |||||||||||||||||||| Sbjct: 144911 cttgagaagaagcagaataa 144930
>gb|AC021059.25| Homo sapiens 3 BAC RP11-464E15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164076 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 tagatgaaatggacaaaaac 510 |||||||||||||||||||| Sbjct: 154479 tagatgaaatggacaaaaac 154460
>gb|AC092066.4| Homo sapiens chromosome 19 clone CTB-171A8, complete sequence Length = 137411 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 474 aaagctaaaagcagacatagatgaaatg 501 |||| |||||||||| |||||||||||| Sbjct: 49325 aaaggtaaaagcagaaatagatgaaatg 49352
>dbj|AK125952.1| Homo sapiens cDNA FLJ43964 fis, clone TESTI4016925, weakly similar to Dynein beta chain, ciliary Length = 4747 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 3215 ggaaacttctctgatggata 3196
>ref|NM_006444.1| Homo sapiens SMC2 structural maintenance of chromosomes 2-like 1 (yeast) (SMC2L1), mRNA Length = 4166 Score = 40.1 bits (20), Expect = 8.8 Identities = 95/120 (79%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 620 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 679 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| || ||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 680 atgaaaccaccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 739
>gb|AF494040.1| Homo sapiens axonemal heavy chain dynein type 3 (DNAH3) mRNA, complete cds Length = 12351 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 10862 ggaaacttctctgatggata 10843
>gb|AC105410.1| Homo sapiens chromosome 16 clone CTD-2348G11, complete sequence Length = 133838 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 49105 ggaaacttctctgatggata 49124
>ref|NM_017539.1| Homo sapiens dynein, axonemal, heavy polypeptide 3 (DNAH3), mRNA Length = 12351 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 10862 ggaaacttctctgatggata 10843
>emb|BX004888.9| Zebrafish DNA sequence from clone DKEY-8F21 in linkage group 1, complete sequence Length = 219280 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 actcagtgatgtcaaacaaatcca 440 |||||||||||||| ||||||||| Sbjct: 168950 actcagtgatgtcatacaaatcca 168927
>dbj|AK221369.1| Arabidopsis thaliana mRNA for protein kinase - like protein, complete cds, clone: RAFL25-34-O20 Length = 2751 Score = 40.1 bits (20), Expect = 8.8 Identities = 29/32 (90%) Strand = Plus / Minus Query: 227 agaagaagcagaataaagtcgaggagatcaat 258 ||||||||||||| |||| |||||||||||| Sbjct: 2479 agaagaagcagaagaaagaagaggagatcaat 2448
>dbj|AK053178.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched library, clone:E030025L22 product:hypothetical Dynein heavy chain containing protein, full insert sequence Length = 3247 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 1826 ggaaacttctctgatggata 1807
>gb|AC093675.4| Homo sapiens BAC clone RP11-592G13 from 2, complete sequence Length = 123182 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caaacaaatccagggaaaga 448 |||||||||||||||||||| Sbjct: 60477 caaacaaatccagggaaaga 60458
>dbj|AP003200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1046G12 Length = 163533 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 ctgctgaaaaagaagccaaactag 547 |||||||||||||| ||||||||| Sbjct: 7773 ctgctgaaaaagaacccaaactag 7796
>gb|AC156392.5| Mus musculus 10 BAC RP24-320E8 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188305 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 acttaaaagattctgtattg 376 |||||||||||||||||||| Sbjct: 158385 acttaaaagattctgtattg 158404
>gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complete sequence Length = 208477 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 525 tgctgaaaaagaagccaaac 544 |||||||||||||||||||| Sbjct: 27886 tgctgaaaaagaagccaaac 27905
>gb|AC092636.3| Homo sapiens BAC clone RP11-353K11 from 2, complete sequence Length = 199721 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 attagagaaacttagaaaag 307 |||||||||||||||||||| Sbjct: 39693 attagagaaacttagaaaag 39712
>gb|AC018465.8| Homo sapiens BAC clone RP11-350D5 from 2, complete sequence Length = 167073 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 149284 acatagatgaaatggacaaa 149303
>gb|AC007349.1|AC007349 Homo sapiens clone RP11-85E16 from 7p14-15, complete sequence Length = 175212 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 86885 acatagatgaaatggacaaa 86904
>dbj|AP003244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0419B01 Length = 149610 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 524 ctgctgaaaaagaagccaaactag 547 |||||||||||||| ||||||||| Sbjct: 51680 ctgctgaaaaagaacccaaactag 51703
>gb|AF222686.1|AF222686 Homo sapiens chromosome X PAC K6166 map Xp11.23, complete sequence Length = 122181 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 69320 acatagatgaaatggacaaa 69301
>emb|AL954331.8| Zebrafish DNA sequence from clone CH211-79E4 in linkage group 7, complete sequence Length = 193627 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 69781 acatagatgaaatggacaaa 69762
>emb|CT025675.12| Mouse DNA sequence from clone RP24-289M11 on chromosome 14, complete sequence Length = 147656 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ttaactgctgaaaaagaagc 539 |||||||||||||||||||| Sbjct: 80900 ttaactgctgaaaaagaagc 80919
>emb|AL121768.4|CNS01DSB Human chromosome 14 DNA sequence BAC R-976B16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 213239 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 ttttctaattatgcaagggc 115 |||||||||||||||||||| Sbjct: 115941 ttttctaattatgcaagggc 115922
>gb|AC108782.9| Mus musculus chromosome 8, clone RP23-350C11, complete sequence Length = 221428 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 202414 acatagatgaaatggacaaa 202433
>gb|AC108833.9| Mus musculus chromosome 14, clone RP23-263F4, complete sequence Length = 171398 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ttaactgctgaaaaagaagc 539 |||||||||||||||||||| Sbjct: 144665 ttaactgctgaaaaagaagc 144684
>gb|AF092563.1|AF092563 Homo sapiens chromosome-associated protein-E (hCAP-E) mRNA, complete cds Length = 4166 Score = 40.1 bits (20), Expect = 8.8 Identities = 95/120 (79%) Strand = Plus / Plus Query: 76 cttaacgtgaacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaac 135 ||||| || ||||| || || ||||| || ||||| || || ||||| ||||| |||| Sbjct: 620 cttaatgttaacaaccctcactttctcatcatgcagggccgaattacaaaagtattgaat 679 Query: 136 atgaagcctccagaaattctttccatgttggaagaggcagcaggcacaaggatgtatgaa 195 ||||| || ||||| ||| | |||||| | ||||| ||||| || || |||||||||||| Sbjct: 680 atgaaaccaccagagattttatccatgatagaagaagcagctggaaccaggatgtatgaa 739
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 aactgctgaaaaagaagcca 541 |||||||||||||||||||| Sbjct: 3041275 aactgctgaaaaagaagcca 3041256
>emb|BX005022.7| Zebrafish DNA sequence from clone DKEY-6N21 in linkage group 7, complete sequence Length = 217582 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 aagcagaataaagtcgagga 251 |||||||||||||||||||| Sbjct: 80166 aagcagaataaagtcgagga 80185
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 gcactcagtgatgtcaaaca 434 |||||||||||||||||||| Sbjct: 174170 gcactcagtgatgtcaaaca 174151
>gb|AC154298.2| Mus musculus BAC clone RP23-399K17 from chromosome 17, complete sequence Length = 199019 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 136738 acatagatgaaatggacaaa 136757
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 40.1 bits (20), Expect = 8.8 Identities = 50/60 (83%) Strand = Plus / Minus Query: 85 aacaatccccattttctaattatgcaagggcgtattacgaaagtgctgaacatgaagcct 144 ||||||||| | ||||| || ||||| || || || || ||||| ||||||||||||||| Sbjct: 3217140 aacaatcccaactttctgatcatgcagggtcgaatcaccaaagtactgaacatgaagcct 3217081
>gb|AC161596.2| Mus musculus BAC clone RP23-477K6 from chromosome 9, complete sequence Length = 187832 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 614 ctctgatggataatcaagag 633 |||||||||||||||||||| Sbjct: 58923 ctctgatggataatcaagag 58904
>gb|AF479646.1| Homo sapiens carcinoembryonic antigen like-2 protein (CEAL2) gene, complete cds Length = 19950 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 474 aaagctaaaagcagacatagatgaaatg 501 |||| |||||||||| |||||||||||| Sbjct: 17792 aaaggtaaaagcagaaatagatgaaatg 17819
>gb|AC165153.2| Mus musculus BAC clone RP23-359L1 from chromosome 17, complete sequence Length = 219548 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agatcaataaacttcttgat 270 |||||||||||||||||||| Sbjct: 15560 agatcaataaacttcttgat 15579
>emb|AL807390.11| Mouse DNA sequence from clone RP23-223F2 on chromosome 4, complete sequence Length = 150847 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 488 acatagatgaaatggacaaa 507 |||||||||||||||||||| Sbjct: 62441 acatagatgaaatggacaaa 62422
>emb|AL713981.17| Mouse DNA sequence from clone RP23-173O12 on chromosome 2, complete sequence Length = 223609 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 519 cttaactgctgaaaaagaagccaa 542 |||||||||||||| ||||||||| Sbjct: 185155 cttaactgctgaaagagaagccaa 185178
>emb|AL671925.4| Mouse DNA sequence from clone RP23-236O21 on chromosome 4, complete sequence Length = 218429 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 cacttattaaggaaacttct 615 |||||||||||||||||||| Sbjct: 97249 cacttattaaggaaacttct 97268
>emb|AL096732.1|HSM800680 Homo sapiens mRNA; cDNA DKFZp434N074 (from clone DKFZp434N074) Length = 2958 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 606 ggaaacttctctgatggata 625 |||||||||||||||||||| Sbjct: 1410 ggaaacttctctgatggata 1391
>gb|L22193.1|GOTREPSA Capra hircus DNA sequence with dinucleotide polymorphism repeat Length = 288 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 caataaacttcttgatgatgaaat 278 ||||||||||| |||||||||||| Sbjct: 262 caataaacttcctgatgatgaaat 285
>dbj|AP005404.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-94H14, complete sequence Length = 142000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 tctttccatgttggaagagg 172 |||||||||||||||||||| Sbjct: 99599 tctttccatgttggaagagg 99580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,420,826 Number of Sequences: 3902068 Number of extensions: 7420826 Number of successful extensions: 165943 Number of sequences better than 10.0: 131 Number of HSP's better than 10.0 without gapping: 132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165565 Number of HSP's gapped (non-prelim): 366 length of query: 647 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 624 effective length of database: 17,143,297,704 effective search space: 10697417767296 effective search space used: 10697417767296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
