ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags18o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
2dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
4dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
5dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 129 8e-27
6gb|AY103604.1| Zea mays PCO142082 mRNA sequence 123 5e-25
7gb|AY108395.1| Zea mays PCO142081 mRNA sequence 78 3e-11
8ref|NM_202482.1| Arabidopsis thaliana unknown protein AT3G02540 ... 46 0.090
9ref|NM_111121.2| Arabidopsis thaliana unknown protein AT3G02540 ... 46 0.090
10gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC... 46 0.090
11gb|AY113034.1| Arabidopsis thaliana AT3g02540/F16B3_17 mRNA, com... 46 0.090
12gb|AY039562.1| Arabidopsis thaliana AT3g02540/F16B3_17 mRNA, com... 46 0.090
13emb|BX823804.1|CNS0A7FW Arabidopsis thaliana Full-length cDNA Co... 46 0.090
14emb|BX824698.1|CNS0A6VI Arabidopsis thaliana Full-length cDNA Co... 46 0.090
15emb|BX824390.1|CNS0A6TM Arabidopsis thaliana Full-length cDNA Co... 46 0.090
16dbj|AB109197.1| Arabidopsis thaliana AtRAD23-3beta mRNA for RAD2... 46 0.090
17dbj|AB109196.1| Arabidopsis thaliana AtRAD23-3alpha mRNA for RAD... 46 0.090
18gb|AC099341.4| Homo sapiens BAC clone RP11-317C13 from 7, comple... 44 0.36
19dbj|AB073646.1| Homo sapiens primary neuroblastoma cDNA, clone:N... 44 0.36
20dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.36
21emb|Y12013.1|DCRAD23I Daucus carota mRNA for RAD23 protein, isof... 42 1.4
22dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
23gb|AF185287.1|AF185287 Drosophila melanogaster XCAP-C/SMC4 homol... 42 1.4
24dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
25dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.4
26dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
27dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.4
28gb|AF186472.1|AF186472 Drosophila melanogaster condensin subunit... 42 1.4
29gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds 42 1.4
30gb|AC066590.5| Homo sapiens chromosome 3 clone RP11-324K11 map 3... 40 5.5
31emb|BX569794.8| Zebrafish DNA sequence from clone DKEYP-15B2 in ... 40 5.5
32emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chr... 40 5.5
33emb|AL844485.7| Mouse DNA sequence from clone RP23-436D21 on chr... 40 5.5
34gb|AC087857.3| Homo sapiens chromosome 3 clone RP11-149E15 map 3... 40 5.5 
>dbj|AK073271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029B07, full
           insert sequence
          Length = 1629

 Score =  149 bits (75), Expect = 8e-33
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                       
Query: 271 actccagctgctgcagtaactgcatcaggcgatgctgatgtatacagtcaggctgcatca 330
           |||||||||||||| || || |||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 561 actccagctgctgctgtgaccgcatcaagtgatgcggatgtctacagtcaggctgcatca 620

                                                                       
Query: 331 aaccttgtctntggcggcattctagaacagacagtccaacaaattcttgacatgggtggt 390
           || ||||| |  ||  |||  |||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 aatcttgtttcaggtagcaacctagaacagacaatccaacaaattcttgacatgggtggt 680

                                 
Query: 391 ggcacctgggaacgtgatatgg 412
           ||||||||||||||||| ||||
Sbjct: 681 ggcacctgggaacgtgacatgg 702



 Score =  135 bits (68), Expect = 1e-28
 Identities = 133/155 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
           |||||||||||||||||||| ||| |||| |  ||||| ||||| |||||||| ||||||
Sbjct: 300 aaaattctcaaggatgatacaactttggaaggcaacaaagttgctgagaacagcttcctt 359

                                                                       
Query: 61  gttataatgctgnctaagcctaaggcgtcatctagtggcgcttcttctgcttcaaaggca 120
           |||||||||||| ||||| | || || ||||| ||||| |||||  ||||||||||||||
Sbjct: 360 gttataatgctgtctaaggccaaagcatcatcaagtggagcttcaactgcttcaaaggca 419

                                              
Query: 121 cctgttagtcagtctcaacctgctaccccagttgc 155
           ||||| || ||||||||||| || || ||||||||
Sbjct: 420 cctgtgagccagtctcaaccagcaactccagttgc 454



 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 178 gttgcctcagctgcaagatcaccaccttcacaagcacctgttgctgcatctgaaccggcg 237
           |||||||||| ||||||| |||||||| ||||||||||||||| | || |||||||||| 
Sbjct: 450 gttgcctcagttgcaagaacaccacctccacaagcacctgttgttacacctgaaccggca 509

                                                          
Query: 238 cctcccagtgcacagccttcagctgtttctgatactccagctgctgc 284
           ||||| |||||||||||| ||| || |||||  ||||||||||||||
Sbjct: 510 cctccaagtgcacagcctccagttgcttctgccactccagctgctgc 556
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>dbj|AK061556.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-C08, full
           insert sequence
          Length = 1567

 Score =  149 bits (75), Expect = 8e-33
 Identities = 125/142 (88%)
 Strand = Plus / Plus

                                                                       
Query: 271 actccagctgctgcagtaactgcatcaggcgatgctgatgtatacagtcaggctgcatca 330
           |||||||||||||| || || |||||| | ||||| ||||| ||||||||||||||||||
Sbjct: 526 actccagctgctgctgtgaccgcatcaagtgatgcggatgtctacagtcaggctgcatca 585

                                                                       
Query: 331 aaccttgtctntggcggcattctagaacagacagtccaacaaattcttgacatgggtggt 390
           || ||||| |  ||  |||  |||||||||||| ||||||||||||||||||||||||||
Sbjct: 586 aatcttgtttcaggtagcaacctagaacagacaatccaacaaattcttgacatgggtggt 645

                                 
Query: 391 ggcacctgggaacgtgatatgg 412
           ||||||||||||||||| ||||
Sbjct: 646 ggcacctgggaacgtgacatgg 667



 Score =  135 bits (68), Expect = 1e-28
 Identities = 133/155 (85%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
           |||||||||||||||||||| ||| |||| |  ||||| ||||| |||||||| ||||||
Sbjct: 265 aaaattctcaaggatgatacaactttggaaggcaacaaagttgctgagaacagcttcctt 324

                                                                       
Query: 61  gttataatgctgnctaagcctaaggcgtcatctagtggcgcttcttctgcttcaaaggca 120
           |||||||||||| ||||| | || || ||||| ||||| |||||  ||||||||||||||
Sbjct: 325 gttataatgctgtctaaggccaaagcatcatcaagtggagcttcaactgcttcaaaggca 384

                                              
Query: 121 cctgttagtcagtctcaacctgctaccccagttgc 155
           ||||| || ||||||||||| || || ||||||||
Sbjct: 385 cctgtgagccagtctcaaccagcaactccagttgc 419



 Score =  109 bits (55), Expect = 7e-21
 Identities = 94/107 (87%)
 Strand = Plus / Plus

                                                                       
Query: 178 gttgcctcagctgcaagatcaccaccttcacaagcacctgttgctgcatctgaaccggcg 237
           |||||||||| ||||||| |||||||| ||||||||||||||| | || |||||||||| 
Sbjct: 415 gttgcctcagttgcaagaacaccacctccacaagcacctgttgttacacctgaaccggca 474

                                                          
Query: 238 cctcccagtgcacagccttcagctgtttctgatactccagctgctgc 284
           ||||| |||||||||||| ||| || |||||  ||||||||||||||
Sbjct: 475 cctccaagtgcacagcctccagttgcttctgccactccagctgctgc 521
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  129 bits (65), Expect = 8e-27
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                           
Query: 301     gatgctgatgtatacagtcaggctgcatcaaaccttgtctntggcggcattctagaacag 360
               ||||| ||||| |||||||||||||||||||| ||||| |  ||  |||  |||||||||
Sbjct: 8734906 gatgcggatgtctacagtcaggctgcatcaaatcttgtttcaggtagcaacctagaacag 8734965

                                                                   
Query: 361     acagtccaacaaattcttgacatgggtggtggcacctgggaacgtgatatgg 412
               ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8734966 acaatccaacaaattcttgacatgggtggtggcacctgggaacgtgacatgg 8735017



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                           
Query: 1       aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
               |||||||||||||||||||| ||| |||| |  ||||| ||||| |||||||| ||||||
Sbjct: 8732204 aaaattctcaaggatgatacaactttggaaggcaacaaagttgctgagaacagcttcctt 8732263

                                 
Query: 61      gttataatgctgnctaag 78
               |||||||||||| |||||
Sbjct: 8732264 gttataatgctgtctaag 8732281



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                        
Query: 178     gttgcctcagctgcaagatcaccaccttcacaagcacctgttgctgcatctgaaccg 234
               |||||||||| ||||||| |||||||| ||||||||||||||| | || ||||||||
Sbjct: 8733575 gttgcctcagttgcaagaacaccacctccacaagcacctgttgttacacctgaaccg 8733631



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                              
Query: 238     cctcccagtgcacagccttcagctgtttctgatactccagctgctgc 284
               ||||| |||||||||||| ||| || |||||  ||||||||||||||
Sbjct: 8733710 cctccaagtgcacagcctccagttgcttctgccactccagctgctgc 8733756



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 88      tcatctagtggcgcttcttctgcttcaaaggcacctgt 125
               ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 8733037 tcatcaagtggagcttcaactgcttcaaaggcacctgt 8733074
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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OJ1001_B06
          Length = 134810

 Score =  129 bits (65), Expect = 8e-27
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                        
Query: 301  gatgctgatgtatacagtcaggctgcatcaaaccttgtctntggcggcattctagaacag 360
            ||||| ||||| |||||||||||||||||||| ||||| |  ||  |||  |||||||||
Sbjct: 5227 gatgcggatgtctacagtcaggctgcatcaaatcttgtttcaggtagcaacctagaacag 5286

                                                                
Query: 361  acagtccaacaaattcttgacatgggtggtggcacctgggaacgtgatatgg 412
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5287 acaatccaacaaattcttgacatgggtggtggcacctgggaacgtgacatgg 5338



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
            |||||||||||||||||||| ||| |||| |  ||||| ||||| |||||||| ||||||
Sbjct: 2525 aaaattctcaaggatgatacaactttggaaggcaacaaagttgctgagaacagcttcctt 2584

                              
Query: 61   gttataatgctgnctaag 78
            |||||||||||| |||||
Sbjct: 2585 gttataatgctgtctaag 2602



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                     
Query: 178  gttgcctcagctgcaagatcaccaccttcacaagcacctgttgctgcatctgaaccg 234
            |||||||||| ||||||| |||||||| ||||||||||||||| | || ||||||||
Sbjct: 3896 gttgcctcagttgcaagaacaccacctccacaagcacctgttgttacacctgaaccg 3952



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                           
Query: 238  cctcccagtgcacagccttcagctgtttctgatactccagctgctgc 284
            ||||| |||||||||||| ||| || |||||  ||||||||||||||
Sbjct: 4031 cctccaagtgcacagcctccagttgcttctgccactccagctgctgc 4077



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 88   tcatctagtggcgcttcttctgcttcaaaggcacctgt 125
            ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 3358 tcatcaagtggagcttcaactgcttcaaaggcacctgt 3395
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>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score =  129 bits (65), Expect = 8e-27
 Identities = 100/112 (89%)
 Strand = Plus / Plus

                                                                          
Query: 301    gatgctgatgtatacagtcaggctgcatcaaaccttgtctntggcggcattctagaacag 360
              ||||| ||||| |||||||||||||||||||| ||||| |  ||  |||  |||||||||
Sbjct: 149888 gatgcggatgtctacagtcaggctgcatcaaatcttgtttcaggtagcaacctagaacag 149947

                                                                  
Query: 361    acagtccaacaaattcttgacatgggtggtggcacctgggaacgtgatatgg 412
              ||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 149948 acaatccaacaaattcttgacatgggtggtggcacctgggaacgtgacatgg 149999



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                          
Query: 1      aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
              |||||||||||||||||||| ||| |||| |  ||||| ||||| |||||||| ||||||
Sbjct: 147186 aaaattctcaaggatgatacaactttggaaggcaacaaagttgctgagaacagcttcctt 147245

                                
Query: 61     gttataatgctgnctaag 78
              |||||||||||| |||||
Sbjct: 147246 gttataatgctgtctaag 147263



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                       
Query: 178    gttgcctcagctgcaagatcaccaccttcacaagcacctgttgctgcatctgaaccg 234
              |||||||||| ||||||| |||||||| ||||||||||||||| | || ||||||||
Sbjct: 148557 gttgcctcagttgcaagaacaccacctccacaagcacctgttgttacacctgaaccg 148613



 Score = 46.1 bits (23), Expect = 0.090
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                             
Query: 238    cctcccagtgcacagccttcagctgtttctgatactccagctgctgc 284
              ||||| |||||||||||| ||| || |||||  ||||||||||||||
Sbjct: 148692 cctccaagtgcacagcctccagttgcttctgccactccagctgctgc 148738



 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                    
Query: 88     tcatctagtggcgcttcttctgcttcaaaggcacctgt 125
              ||||| ||||| |||||  |||||||||||||||||||
Sbjct: 148019 tcatcaagtggagcttcaactgcttcaaaggcacctgt 148056
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>gb|AY103604.1| Zea mays PCO142082 mRNA sequence
          Length = 1672

 Score =  123 bits (62), Expect = 5e-25
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 301 gatgctgatgtatacagtcaggctgcatcaaaccttgtctntggcggcattctagaacag 360
           ||||||||||| ||||||||||| || ||||||||||| | ||||  || ||||||||||
Sbjct: 556 gatgctgatgtgtacagtcaggcagcttcaaaccttgtatctggcaacaatctagaacag 615

                                                            
Query: 361 acagtccaacaaattcttgacatgggtggtggcacctgggaacgtgata 409
           ||  |||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 616 actatccaacaaattcttgacatgggtggtggtacatgggaacgtgata 664



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 87/105 (82%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttcctt 60
           ||||||||||||||||| |||||| ||||    |||   ||||| |||||||| ||||||
Sbjct: 280 aaaattctcaaggatgaaaccactttggaaagcaacggagttgctgagaacagcttcctt 339

                                                        
Query: 61  gttataatgctgnctaagcctaaggcgtcatctagtggcgcttct 105
           ||||||||| || | ||| ||||||| ||||| ||||| ||||||
Sbjct: 340 gttataatgttgtccaaggctaaggcatcatcgagtggagcttct 384
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>gb|AY108395.1| Zea mays PCO142081 mRNA sequence
          Length = 1776

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 89/106 (83%)
 Strand = Plus / Plus

                                                                       
Query: 301 gatgctgatgtatacagtcaggctgcatcaaaccttgtctntggcggcattctagaacag 360
           ||||||||||| ||||||||||| || || |||||||| |  |||  ||  |||||||||
Sbjct: 574 gatgctgatgtgtacagtcaggcagcttcgaaccttgtatcaggcaacaacctagaacag 633

                                                         
Query: 361 acagtccaacaaattcttgacatgggtggtggcacctgggaacgtg 406
           ||  | |||||||||||||||||||||||||| || ||||| ||||
Sbjct: 634 actattcaacaaattcttgacatgggtggtggtacttgggagcgtg 679



 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 40  gttgcagagaacagtttccttgttataatgctgnctaagcctaaggcgtcatctagtggc 99
           ||||| |||||||| |||||||||||||||||| | ||| ||||||| || || ||||| 
Sbjct: 346 gttgctgagaacagcttccttgttataatgctgtccaaggctaaggcatcgtcaagtgga 405

                
Query: 100 gcttc 104
           |||||
Sbjct: 406 gcttc 410
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>ref|NM_202482.1| Arabidopsis thaliana unknown protein AT3G02540 transcript variant
           AT3G02540.2 mRNA, complete cds
          Length = 1403

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 724 attcttgacatgggtggaggaacctgggatcgtga 758
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>ref|NM_111121.2| Arabidopsis thaliana unknown protein AT3G02540 transcript variant
           AT3G02540.1 mRNA, complete cds
          Length = 1681

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 724 attcttgacatgggtggaggaacctgggatcgtga 758
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>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence,
             complete sequence
          Length = 103904

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 373   attcttgacatgggtggtggcacctgggaacgtga 407
             ||||||||||||||||| || |||||||| |||||
Sbjct: 50126 attcttgacatgggtggaggaacctgggatcgtga 50092
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>gb|AY113034.1| Arabidopsis thaliana AT3g02540/F16B3_17 mRNA, complete cds
          Length = 1260

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 580 attcttgacatgggtggaggaacctgggatcgtga 614
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>gb|AY039562.1| Arabidopsis thaliana AT3g02540/F16B3_17 mRNA, complete cds
          Length = 1667

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 710 attcttgacatgggtggaggaacctgggatcgtga 744
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>emb|BX823804.1|CNS0A7FW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS77ZF11 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 707 attcttgacatgggtggaggaacctgggatcgtga 741
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>emb|BX824698.1|CNS0A6VI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH65ZE09 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1405

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 623 attcttgacatgggtggaggaacctgggatcgtga 657
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>emb|BX824390.1|CNS0A6TM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH45ZG04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1456

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 663 attcttgacatgggtggaggaacctgggatcgtga 697
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>dbj|AB109197.1| Arabidopsis thaliana AtRAD23-3beta mRNA for RAD23-like protein,
           complete cds
          Length = 1014

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 334 attcttgacatgggtggaggaacctgggatcgtga 368
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>dbj|AB109196.1| Arabidopsis thaliana AtRAD23-3alpha mRNA for RAD23-like protein,
           complete cds
          Length = 1260

 Score = 46.1 bits (23), Expect = 0.090
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 373 attcttgacatgggtggtggcacctgggaacgtga 407
           ||||||||||||||||| || |||||||| |||||
Sbjct: 580 attcttgacatgggtggaggaacctgggatcgtga 614
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>gb|AC099341.4| Homo sapiens BAC clone RP11-317C13 from 7, complete sequence
          Length = 51939

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 271   actccagctgctgcagtaactgcatc 296
             |||||||||||||| |||||||||||
Sbjct: 16923 actccagctgctgctgtaactgcatc 16948
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>dbj|AB073646.1| Homo sapiens primary neuroblastoma cDNA, clone:Nbla00137, full
           insert sequence
          Length = 2862

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 271 actccagctgctgcagtaactgcatc 296
           |||||||||||||| |||||||||||
Sbjct: 329 actccagctgctgctgtaactgcatc 354
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>dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1241F12
          Length = 142424

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 29     atgctaacaaggttgcagagaa 50
              ||||||||||||||||||||||
Sbjct: 119308 atgctaacaaggttgcagagaa 119329
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>emb|Y12013.1|DCRAD23I Daucus carota mRNA for RAD23 protein, isoform I
          Length = 1496

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 373 attcttgacatgggtggtggcacctggga 401
           ||||||||||||||||| ||||| |||||
Sbjct: 555 attcttgacatgggtgggggcacatggga 583
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                            
Query: 7        ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
                ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 14308934 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 14308993

                     
Query: 67       atgct 71
                |||||
Sbjct: 14308994 atgct 14308998
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>gb|AF185287.1|AF185287 Drosophila melanogaster XCAP-C/SMC4 homolog Gluon (glu) mRNA,
            complete cds
          Length = 4461

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   cagtttccttgttataatgct 71
            |||||||||||||||||||||
Sbjct: 3533 cagtttccttgttataatgct 3513
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>dbj|AP005722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1261_A08
          Length = 162113

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 7      ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
              ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 125479 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 125538

                   
Query: 67     atgct 71
              |||||
Sbjct: 125539 atgct 125543
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>dbj|AP005707.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
           PAC clone:P0465E03
          Length = 151206

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
           ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 737 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 796

                
Query: 67  atgct 71
           |||||
Sbjct: 797 atgct 801
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>dbj|AK103728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138E11, full
           insert sequence
          Length = 2031

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
           ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 220 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 279

                
Query: 67  atgct 71
           |||||
Sbjct: 280 atgct 284
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>dbj|AK103130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119P16, full
           insert sequence
          Length = 1513

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
           ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 220 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 279

                
Query: 67  atgct 71
           |||||
Sbjct: 280 atgct 284
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>gb|AF186472.1|AF186472 Drosophila melanogaster condensin subunit SMC4 (glu) mRNA, complete
            cds
          Length = 4514

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 51   cagtttccttgttataatgct 71
            |||||||||||||||||||||
Sbjct: 3572 cagtttccttgttataatgct 3552
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>gb|U63530.1|OSU63530 Oryza sativa osRAD23 mRNA, complete cds
          Length = 1533

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 7   ctcaaggatgataccactctggatgctaacaaggttgcagagaacagtttccttgttata 66
           ||||||||||| |||||  ||||||  ||||| |||   || ||||| ||||||||||||
Sbjct: 214 ctcaaggatgacaccacattggatgaaaacaaagttcttgaaaacagcttccttgttata 273

                
Query: 67  atgct 71
           |||||
Sbjct: 274 atgct 278
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>gb|AC066590.5| Homo sapiens chromosome 3 clone RP11-324K11 map 3p, complete sequence
          Length = 185895

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   ccacctgtccctgttgcctc 185
             ||||||||||||||||||||
Sbjct: 94369 ccacctgtccctgttgcctc 94388
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>emb|BX569794.8| Zebrafish DNA sequence from clone DKEYP-15B2 in linkage group 6,
            complete sequence
          Length = 162388

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  ttctgcttcaaaggcacctg 124
            ||||||||||||||||||||
Sbjct: 5204 ttctgcttcaaaggcacctg 5185
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>emb|AL808112.34| Mouse DNA sequence from clone RP23-57N22 on chromosome 4, complete
              sequence
          Length = 236158

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    cttcagctgtttctgatact 273
              ||||||||||||||||||||
Sbjct: 142575 cttcagctgtttctgatact 142594
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>emb|AL844485.7| Mouse DNA sequence from clone RP23-436D21 on chromosome 2, complete
             sequence
          Length = 43742

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    taacaaggttgcagagaaca 52
             ||||||||||||||||||||
Sbjct: 16813 taacaaggttgcagagaaca 16794
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>gb|AC087857.3| Homo sapiens chromosome 3 clone RP11-149E15 map 3p, complete sequence
          Length = 173606

 Score = 40.1 bits (20), Expect = 5.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    ccacctgtccctgttgcctc 185
              ||||||||||||||||||||
Sbjct: 162524 ccacctgtccctgttgcctc 162543


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,772,963
Number of Sequences: 3902068
Number of extensions: 3772963
Number of successful extensions: 80197
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80071
Number of HSP's gapped (non-prelim): 120
length of query: 414
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 392
effective length of database: 17,147,199,772
effective search space: 6721702310624
effective search space used: 6721702310624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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