>YNC4_YEAST (P53970) Hypothetical 27.7 kDa protein in UME3-HDA1 intergenic|
          region
          Length = 246

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 64 HQGQNSLPFAGLLLPSXKICQ 2
          H GQ  L F G LLP+ KIC+
Sbjct: 19 HLGQTDLSFGGKLLPALKICE 39

>THD2_SHIFL (P0AGF9) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine|
           deaminase)
          Length = 329

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 145 LVPILLVISEQYIRNTSMALHQHLQCVHQGQNSLPFAGLL 26
           LV  ++++SE  IRN+ +AL Q  + V +G  +L  A LL
Sbjct: 254 LVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALL 293

>THD2_ECOLI (P0AGF6) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine|
           deaminase)
          Length = 329

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 145 LVPILLVISEQYIRNTSMALHQHLQCVHQGQNSLPFAGLL 26
           LV  ++++SE  IRN+ +AL Q  + V +G  +L  A LL
Sbjct: 254 LVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALL 293

>THD2_ECOL6 (P0AGF7) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine|
           deaminase)
          Length = 329

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 145 LVPILLVISEQYIRNTSMALHQHLQCVHQGQNSLPFAGLL 26
           LV  ++++SE  IRN+ +AL Q  + V +G  +L  A LL
Sbjct: 254 LVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALL 293

>THD2_ECO57 (P0AGF8) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine|
           deaminase)
          Length = 329

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -1

Query: 145 LVPILLVISEQYIRNTSMALHQHLQCVHQGQNSLPFAGLL 26
           LV  ++++SE  IRN+ +AL Q  + V +G  +L  A LL
Sbjct: 254 LVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALL 293

>THD2_SALTY (P11954) Threonine dehydratase catabolic (EC 4.3.1.19) (Threonine|
           deaminase)
          Length = 329

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -1

Query: 145 LVPILLVISEQYIRNTSMALHQHLQCVHQGQNSLPFAGLL 26
           LV  ++++SE  IRN+ +AL Q  + + +G  +L  A LL
Sbjct: 254 LVDDIVLVSEDEIRNSMIALIQRNKVITEGAGALACAALL 293

>RL8_AEDAL (P41569) 60S ribosomal protein L8|
          Length = 261

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 19 KVTASQRKAESSVLDAHTADVDGEP 93
          +V  +QRK E SV  AHT    GEP
Sbjct: 3  RVIRAQRKGEGSVFTAHTKKRKGEP 27


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.121    0.341 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,372,126
Number of Sequences: 219361
Number of extensions: 292754
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)