| Clone Name | bags19d14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY108743.1| Zea mays PCO118444 mRNA sequence Length = 1127 Score = 137 bits (69), Expect = 1e-29 Identities = 96/105 (91%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 ||||||||||||||||||| |||||| |||||| ||||||||||| ||||||||||||| Sbjct: 674 cagagagttctgtccttgacgcacacgttgcagaggttgatggagaaccatactggtatt 733 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 734 atgagtatcttgttcggaaatcaccaacaaaatctgcaccagaac 778
>gb|BT019249.1| Zea mays clone Contig922.F mRNA sequence Length = 1086 Score = 121 bits (61), Expect = 6e-25 Identities = 94/105 (89%) Strand = Plus / Minus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 ||||||||||||||||||||||||| || |||| ||||| ||||| ||||||||||||| Sbjct: 524 cagagagttctgtccttgatgcacatgctacagaggttgacggagaaccatactggtatt 465 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| ||||||||||||||||||||||||| ||| |||||| Sbjct: 464 atgagtatcttgttcggaaatcaccaacaaaatctgcatcagaac 420
>ref|NM_192810.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1083 Score = 105 bits (53), Expect = 4e-20 Identities = 92/105 (87%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| | Sbjct: 707 cagagagttctgtccttgatgcacactcttcagatgtcgatggagaaccatactggtact 766 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| | ||||||||||| || ||| |||| |||||||||| Sbjct: 767 atgagtatctagttcggaaatctcctacacaatctgcaccagaac 811
>dbj|AK109342.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F07, full insert sequence Length = 1213 Score = 105 bits (53), Expect = 4e-20 Identities = 92/105 (87%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| | Sbjct: 733 cagagagttctgtccttgatgcacactcttcagatgtcgatggagaaccatactggtact 792 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| | ||||||||||| || ||| |||| |||||||||| Sbjct: 793 atgagtatctagttcggaaatctcctacacaatctgcaccagaac 837
>dbj|AK071226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086L13, full insert sequence Length = 1162 Score = 105 bits (53), Expect = 4e-20 Identities = 92/105 (87%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| | Sbjct: 720 cagagagttctgtccttgatgcacactcttcagatgtcgatggagaaccatactggtact 779 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| | ||||||||||| || ||| |||| |||||||||| Sbjct: 780 atgagtatctagttcggaaatctcctacacaatctgcaccagaac 824
>dbj|AK068647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158N13, full insert sequence Length = 1143 Score = 105 bits (53), Expect = 4e-20 Identities = 92/105 (87%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgttgatggagagccatactggtatt 103 |||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||| | Sbjct: 701 cagagagttctgtccttgatgcacactcttcagatgtcgatggagaaccatactggtact 760 Query: 104 acgaatatattgttcggaaatcaccaacaaaatcggcaccagaac 148 | || ||| | ||||||||||| || ||| |||| |||||||||| Sbjct: 761 atgagtatctagttcggaaatctcctacacaatctgcaccagaac 805
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 8e-06 Identities = 35/37 (94%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgt 80 |||||||||||||||||||||||||| || ||||||| Sbjct: 24570713 cagagagttctgtccttgatgcacactcttcagatgt 24570749 Score = 40.1 bits (20), Expect = 1.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 82 gatggagagccatactggtattacgaatatattgttcggaaatc 125 |||||||| ||||||||||| || || ||| | ||||||||||| Sbjct: 24570866 gatggagaaccatactggtactatgagtatctagttcggaaatc 24570909
>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0686E09 Length = 156425 Score = 58.0 bits (29), Expect = 8e-06 Identities = 35/37 (94%) Strand = Plus / Plus Query: 44 cagagagttctgtccttgatgcacacactgcagatgt 80 |||||||||||||||||||||||||| || ||||||| Sbjct: 151097 cagagagttctgtccttgatgcacactcttcagatgt 151133 Score = 40.1 bits (20), Expect = 1.8 Identities = 38/44 (86%) Strand = Plus / Plus Query: 82 gatggagagccatactggtattacgaatatattgttcggaaatc 125 |||||||| ||||||||||| || || ||| | ||||||||||| Sbjct: 151250 gatggagaaccatactggtactatgagtatctagttcggaaatc 151293
>emb|BX511310.13| Zebrafish DNA sequence from clone DKEY-274M14 in linkage group 23, complete sequence Length = 169760 Score = 42.1 bits (21), Expect = 0.46 Identities = 24/25 (96%) Strand = Plus / Minus Query: 61 gatgcacacactgcagatgttgatg 85 |||||| |||||||||||||||||| Sbjct: 7322 gatgcaaacactgcagatgttgatg 7298
>gb|AF525364.1| Cricetulus griseus GDP-mannose 4,6-dehydratase (Gmd) mRNA, complete cds Length = 1606 Score = 42.1 bits (21), Expect = 0.46 Identities = 21/21 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatggag 88 ||||||||||||||||||||| Sbjct: 497 acactgcagatgttgatggag 517
>ref|NM_121183.3| Arabidopsis thaliana unknown protein AT5G11450 mRNA, complete cds Length = 1137 Score = 40.1 bits (20), Expect = 1.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 ttgatggagagccatactggtattacgaatatattgttcggaaatcaccaac 131 ||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 677 ttgatggggagccttactggtactacgagtaccttgtccgcaaatcaccaac 728
>gb|AC133335.4| Oryza sativa chromosome 3 BAC OSJNBa0005H05 genomic sequence, complete sequence Length = 55268 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atggagagccatactggtat 102 |||||||||||||||||||| Sbjct: 779 atggagagccatactggtat 798
>gb|BC073020.1| Xenopus laevis MGC82624 protein, mRNA (cDNA clone MGC:82624 IMAGE:5048499), complete cds Length = 1439 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatgga 87 |||||||||||||||||||| Sbjct: 359 acactgcagatgttgatgga 378
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atggagagccatactggtat 102 |||||||||||||||||||| Sbjct: 26581061 atggagagccatactggtat 26581080
>emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project) Length = 101665 Score = 40.1 bits (20), Expect = 1.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 ttgatggagagccatactggtattacgaatatattgttcggaaatcaccaac 131 ||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 17621 ttgatggggagccttactggtactacgagtaccttgtccgcaaatcaccaac 17672
>gb|AY114705.1| Arabidopsis thaliana putative protein (At5g11450) mRNA, complete cds Length = 1014 Score = 40.1 bits (20), Expect = 1.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 ttgatggagagccatactggtattacgaatatattgttcggaaatcaccaac 131 ||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 632 ttgatggggagccttactggtactacgagtaccttgtccgcaaatcaccaac 683
>gb|AY072412.1| Arabidopsis thaliana putative protein (At5g11450) mRNA, complete cds Length = 1124 Score = 40.1 bits (20), Expect = 1.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 ttgatggagagccatactggtattacgaatatattgttcggaaatcaccaac 131 ||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 677 ttgatggggagccttactggtactacgagtaccttgtccgcaaatcaccaac 728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atggagagccatactggtat 102 |||||||||||||||||||| Sbjct: 26672384 atggagagccatactggtat 26672403
>emb|BX833487.1|CNS0A0AN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL58ZH12 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 967 Score = 40.1 bits (20), Expect = 1.8 Identities = 44/52 (84%) Strand = Plus / Plus Query: 80 ttgatggagagccatactggtattacgaatatattgttcggaaatcaccaac 131 ||||||| ||||| |||||||| ||||| || |||| || ||||||||||| Sbjct: 667 ttgatggggagccttactggtactacgagtaccttgtccgcaaatcaccaac 718
>gb|AC079889.20| Oryza sativa chromosome 3 BAC OSJNBa0092M19 genomic sequence, complete sequence Length = 136712 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 atggagagccatactggtat 102 |||||||||||||||||||| Sbjct: 103875 atggagagccatactggtat 103894
>gb|AE014833.1| Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence Length = 252394 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 99 gtattacgaatatattgtt 117 ||||||||||||||||||| Sbjct: 184515 gtattacgaatatattgtt 184533
>ref|XM_706936.1| Candida albicans SC5314 putative transcription factor (CaO19.2646), mRNA Length = 3729 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 116 ttcggaaatcaccaacaaa 134 ||||||||||||||||||| Sbjct: 3262 ttcggaaatcaccaacaaa 3244
>gb|BC042270.1| Xenopus laevis GDP-mannose 4, 6-dehydratase, mRNA (cDNA clone MGC:53456 IMAGE:5572021), complete cds Length = 1584 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 411 acactgcagatgttgatgg 429
>emb|AL121903.13|HSDJ155G6 Human DNA sequence from clone RP1-155G6 on chromosome 20 Contains the 3' end of the ARFGEF2 gene for ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited), the 5' end of the CSE1L gene for chromosome segregation 1-like (yeast), the SNAP23P gene for synaptosomal-associated protein (23 kDa) pseudogene, a novel gene and a CpG island, complete sequence Length = 80600 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 gatgttgatggagagccat 94 ||||||||||||||||||| Sbjct: 48420 gatgttgatggagagccat 48402
>emb|AL033378.12|HS323M4 Human DNA sequence from clone RP3-323M4 on chromosome 6q24.1-25.2 Contains part of the gene for KIAA0790 protein, a cytochrome p450 51 (lanosterol 14-alpha-demethylase) (CYP51) pseudogene, a small nuclear ribonucleoprotein polypeptide E (SNRPE) pseudogene and a CpG island, complete sequence Length = 151938 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 54 tgtccttgatgcacacact 72 ||||||||||||||||||| Sbjct: 68089 tgtccttgatgcacacact 68107
>emb|CR293504.11| Zebrafish DNA sequence from clone CH211-147G3 in linkage group 10, complete sequence Length = 165086 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 138789 acactgcagatgttgatgg 138807
>emb|BX677664.9| Zebrafish DNA sequence from clone DKEYP-122B11 in linkage group 2, complete sequence Length = 170975 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 43305 acactgcagatgttgatgg 43287
>emb|AL954146.8| Zebrafish DNA sequence from clone CH211-213I6 in linkage group 17, complete sequence Length = 207669 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 5655 acactgcagatgttgatgg 5637
>emb|AL672097.5| Zebrafish DNA sequence from clone BUSM1-37O5 in linkage group 9, complete sequence Length = 100381 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 23712 acactgcagatgttgatgg 23730
>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5) Length = 2199546 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 120 gaaatcaccaacaaaatcggcac 142 ||||||||||||||||| ||||| Sbjct: 1788361 gaaatcaccaacaaaatgggcac 1788339
>gb|AF053643.1|HSCSE1G1 Homo sapiens cellular apoptosis susceptibility protein (CSE1) gene, exon 1 Length = 2929 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 gatgttgatggagagccat 94 ||||||||||||||||||| Sbjct: 1485 gatgttgatggagagccat 1467
>gb|BC111472.1| Xenopus laevis cDNA clone MGC:130830 IMAGE:7981605, complete cds Length = 1547 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 423 acactgcagatgttgatgg 441
>emb|AL935307.9| Zebrafish DNA sequence from clone DKEY-63P22, complete sequence Length = 234744 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 68 acactgcagatgttgatgg 86 ||||||||||||||||||| Sbjct: 88514 acactgcagatgttgatgg 88496
>gb|AC161533.22| Mus musculus chromosome 3, clone RP23-55N2, complete sequence Length = 158774 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 aaaggcagagagttctgtccttg 61 |||||||||||||||| |||||| Sbjct: 137221 aaaggcagagagttctctccttg 137199
>gb|AC157492.17| Mus musculus chromosome 3, clone RP24-73C21, complete sequence Length = 187001 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 aaaggcagagagttctgtccttg 61 |||||||||||||||| |||||| Sbjct: 169038 aaaggcagagagttctctccttg 169060 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,149,183 Number of Sequences: 3902068 Number of extensions: 1149183 Number of successful extensions: 77671 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77557 Number of HSP's gapped (non-prelim): 114 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)