>AP3D1_MOUSE (O54774) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin) (mBLVR1)
          Length = 1199

 Score = 34.7 bits (78), Expect = 0.28
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
 Frame = +1

Query: 127 DYRVKLLQKKQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQDPPP----ENVSVPLP 294
           D  VKL ++++ +   +RL++ KKR K +     ++S+  E+D+D  P    + ++  +P
Sbjct: 722 DQYVKLEEQRRHR---QRLEKDKKRKKKEKGKRRHSSLPTESDEDIAPAQRVDIITEEMP 778

Query: 295 DMVLPPSFDCDNPTYRYRFLE 357
           +  LP   D  +P   YR L+
Sbjct: 779 ENALPSDEDDKDPNDPYRALD 799

>AP3D1_HUMAN (O14617) AP-3 complex subunit delta-1 (Adapter-related protein|
           complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3
           complex delta subunit) (Delta-adaptin)
          Length = 1153

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
 Frame = +1

Query: 127 DYRVKLLQKKQWKDELRRLKEMKKR-GKSDMDAYGYASIAGENDQDPPP----ENVSVPL 291
           D  VKL ++++ + +L + K  KKR  K       ++S+  E+D+D  P    + V+  +
Sbjct: 722 DQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEM 781

Query: 292 PDMVLPPSFDCDNPTYRYRFLE 357
           P+  LP   D  +P   YR L+
Sbjct: 782 PENALPSDEDDKDPNDPYRALD 803

>TNNT_CAEEL (Q27371) Troponin T|
          Length = 405

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
 Frame = +1

Query: 52  PFKPLTKAQLARLT-----KEQKNAYFDEYDYRVKLLQKKQWKDELRRLKEM--KKRGKS 210
           P   +T+A++A L      +E++ A   +Y+ R ++L+K+Q + ELR LKE   K+R + 
Sbjct: 56  PPAEMTEAEIAMLAAKKRHEEEEAAKLLDYEQR-RVLEKEQIEQELRELKEKQEKRRAER 114

Query: 211 DMDAYGYASIAGENDQ 258
           + D   +A    ++D+
Sbjct: 115 EEDERQFAERRRQDDE 130

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
            (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
 Frame = +1

Query: 49   PPFKPLTKAQLARLTKEQK----NAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDM 216
            P +  L KA+L R TK +K      +  E   R + + +K+ K E  + +  K++GK+  
Sbjct: 794  PRYDKLEKARLERYTKNEKADKERTFDPERVERERRIVRKE-KGEKDKAERQKRKGKAHS 852

Query: 217  DAYGYASIAGENDQDPPPE 273
             +   +    END++  PE
Sbjct: 853  PSSQPSETEQENDREQSPE 871

>ELG1_YEAST (Q12050) Telomere length regulation protein ELG1 (Telomere|
           elongation suppressor ELG1)
          Length = 791

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +1

Query: 91  TKEQKNAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQDPPP 270
           T   K++  +E   ++K   K +  D  +RL  + K  + +     + SI    D++   
Sbjct: 124 TSRIKSSLLNERASKIKNFLKHETTDTFKRLNSISKLNEIEPPLPLHQSIFPVGDKELSD 183

Query: 271 ENVSVPLPDMVLPP 312
            +V +PLP   +PP
Sbjct: 184 RSVDIPLPFRTIPP 197

>SYFB_BUCAI (P57230) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase beta chain) (PheRS)
          Length = 795

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 385 VLDAHGWDHDCGYDGVSVEESLALLNKFPGTVAVQVTKDKKEFSIHLDSSISAKHGEDAS 564
           VL+ H +  D      ++E +  L+ K  G V   + + K  F IH +++I   H E  +
Sbjct: 355 VLEYHYYGVDPFLQNYAIEYATDLILKICGGVPGPINEKKCNFQIHKNNTIRLHH-ERLN 413

Query: 565 SLAGFDIQT-VGRQLAYILRGETKFK 639
            + GF I T V  ++ Y L  + KF+
Sbjct: 414 KIIGFFIDTSVISKILYRLDYQLKFQ 439

>CHK1_USTMA (P0C198) Serine/threonine-protein kinase CHK1 (EC 2.7.11.1)|
           (Checkpoint kinase 1)
          Length = 662

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 3/142 (2%)
 Frame = +1

Query: 268 PENVSVPLPDMVLPPSFDCDNPTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDGVSVEES 447
           PENVS+  PD +L  SFD                + AR V  A GW  D G  G     S
Sbjct: 388 PENVSLTQPDAILTSSFD----------------LAARAV--ARGWADDTGPGGGLPLPS 429

Query: 448 LALLNKFPGTVAVQVTKDKKEFSIHLDSSISAKHGE--DASSLAGFDIQTVG-RQLAYIL 618
              +  F          D     + +   IS++  E    +S +G+D+   G  Q    L
Sbjct: 430 STAMPAF--------ASDDMSRRLAMSQHISSRRAEFSTTASGSGYDMALPGASQFTQAL 481

Query: 619 RGETKFKSIKKNKTTGGFSVTF 684
              T+F+++     TG   + F
Sbjct: 482 NHFTQFEALTHVAGTGSSHLRF 503

>ABCF1_PIG (Q767L0) ATP-binding cassette sub-family F member 1|
          Length = 807

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +1

Query: 154 KQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQD----PPPENVSVPLPDMVLPPSFD 321
           KQ++ + ++LKE+K  GKS   A      A    Q        +  S   P+++  P   
Sbjct: 511 KQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPK-- 568

Query: 322 CDNPTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDG 429
                Y  RF  P    L+ PVL  HG     GY+G
Sbjct: 569 ----EYTVRFTFPDPPPLSPPVLGLHGVTF--GYEG 598

>ABCF1_PANTR (Q7YR37) ATP-binding cassette sub-family F member 1 (ATP-binding|
           cassette 50)
          Length = 807

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
 Frame = +1

Query: 154 KQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQD----PPPENVSVPLPDMVLPPSFD 321
           KQ++ + ++LKE+K  GKS   A      A    Q        +  S   P+++  P   
Sbjct: 511 KQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPK-- 568

Query: 322 CDNPTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDG 429
                Y  RF  P    L+ PVL  HG     GY+G
Sbjct: 569 ----EYTVRFTFPDPPPLSPPVLGLHGVTF--GYEG 598

>PROI_BACSU (P54552) Pyrroline-5-carboxylate reductase 2 (EC 1.5.1.2) (P5CR 2)|
           (P5C reductase 2)
          Length = 278

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 21/90 (23%)
 Frame = +1

Query: 475 TVAVQVTKDKKEFSIHLDSSISAKHGEDA-----------------SSLAGFDIQTV--- 594
           T +V+  +DK EF  H D  I A   +DA                 S LAG  I+T+   
Sbjct: 48  TYSVRPCRDKNEFFTHTDIIILAFKPKDAAESIDSIRPYIKDQLVISVLAGLTIETIQHY 107

Query: 595 -GRQLAYILRGETKFKSIKKNKTTGGFSVT 681
            GR+LA I        +I+K+ T  GFSV+
Sbjct: 108 FGRKLAVIRVMPNTSAAIRKSAT--GFSVS 135

>WRK55_ARATH (Q9SHB5) Probable WRKY transcription factor 55 (WRKY DNA-binding|
           protein 55)
          Length = 292

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 298 CQVRELKHFLEEDPDHFRLRY*HTHKHPYQTCLSSSSPLTCGAHPSTV 155
           C  ++    L +DP  FR+ Y  +H     TC +S++P    A PST+
Sbjct: 206 CPAKKQVQRLNDDPFTFRVTYRGSH-----TCYNSTAPTASSATPSTI 248

>PGBB_HELPY (O25534) Plasminogen-binding protein pgbB|
          Length = 542

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +1

Query: 97  EQKNAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQ 258
           E KNA   + +   K + K   K+E RRLKE KK+ K++  A  +   A E+ +
Sbjct: 471 ESKNAPVLKENAAKKEVPKPNSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE 524

>ABCF1_RAT (Q6MG08) ATP-binding cassette sub-family F member 1 (ATP-binding|
           cassette 50)
          Length = 839

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +1

Query: 154 KQWKDELRRLKEMKKRGKSDMDAYGYA-SIAGENDQDPPPENVSVPLPDMVLPPSFDCDN 330
           KQ++ + ++LKE+K  GKS   A      +     Q    +N      D   PP      
Sbjct: 543 KQYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQD---PPELLKRP 599

Query: 331 PTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDG 429
             Y  RF  P    L+ PVL  HG     GY+G
Sbjct: 600 REYTVRFTFPDPPPLSPPVLGLHGVTF--GYEG 630

>ABCF1_HUMAN (Q8NE71) ATP-binding cassette sub-family F member 1 (ATP-binding|
           cassette 50) (TNF-alpha-stimulated ABC protein)
          Length = 845

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +1

Query: 154 KQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQD----PPPENVSVPLPDMVLPPSFD 321
           KQ++ + ++LKE+K  GKS   A      A    Q        +  S   P+++  P   
Sbjct: 549 KQYEKQEKKLKELKAGGKSTKQAEKQTKEALTRKQQKCRRKNQDEESQEAPELLKRPK-- 606

Query: 322 CDNPTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDG 429
                Y  RF  P    L+ PVL  HG     GY G
Sbjct: 607 ----EYTVRFTFPDPPPLSPPVLGLHGVTF--GYQG 636

>PGBB_HELPJ (Q9ZKY5) Plasminogen-binding protein pgbB|
          Length = 541

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 97  EQKNAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQ 258
           E KN    + +   K   K   K+E RRLKE KK+ K++  A  +   A E+ +
Sbjct: 470 ESKNTPISKENAAKKEAPKPSSKEEKRRLKEEKKKAKAEQRAREFEQRAREHQE 523

>GYP7_CANGA (Q6FWI1) GTPase-activating protein GYP7 (GAP for YPT7)|
          Length = 745

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
 Frame = +1

Query: 94  KEQKNAYFDEY--------DYRVKLL--QKKQWKDELRRLKEMKKRGKSDMDAYGYASIA 243
           K+ + A  DEY        D  V L   +++ WKD+L R+++  KR   ++D Y Y    
Sbjct: 418 KQLRKALHDEYMELKQKWVDREVNLDNDEEEYWKDQLFRIEKDVKRNDRNIDIYKY---- 473

Query: 244 GENDQDPPPENVSVPLPD 297
             +D  P PE+ +    D
Sbjct: 474 NTSDNLPFPEDTAPTTDD 491

>Y095_TREPA (O83133) Hypothetical protein TP0095|
          Length = 648

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 97  EQKNAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDMDAYGYASIAGENDQDPPPE 273
           E KN Y   Y   V L + ++W++  + ++  +  G    D Y Y  I   +  +PP E
Sbjct: 355 EPKNCY-PHYGLMVCLQEARRWQELAKAIRRAEGAGCDAQDCYYYRVITAAHLSNPPEE 412

>STF1_HUMAN (Q13285) Steroidogenic factor 1 (STF-1) (SF-1) (Adrenal 4-binding|
           protein) (Steroid hormone receptor Ad4BP) (Fushi tarazu
           factor homolog 1)
          Length = 461

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 175 RRLKEMKKRGKSDMDAYGYASIAGENDQDPPPENVSVPLPDMVLPPSFDCDNP 333
           +R + +K++ K+ + A G+    G     PPP     P PD VLPPS     P
Sbjct: 100 KRDRALKQQKKAQIRANGFKLETGPPMGVPPPPP---PAPDYVLPPSLHGPEP 149

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
            cytomatrix protein)
          Length = 5085

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 262  PPPENVSVPLPDMVLPPSFDCDNPTYRYRFLEPTSTVLARPVLDAH 399
            PP  + S P P   LPP+     PTY  + L   +TV +  ++  H
Sbjct: 2359 PPSPSTSSPPPTPPLPPATSPKPPTYPKKKLAVAATVTSTTIVTTH 2404

>DAPB_PSEHT (Q3IKQ7) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 267

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +1

Query: 337 YRYRFLEPTSTVLA--RPVLDAHGWDHD--CGYDGVSVEES 447
           +R++   P+ T LA    + DA GWDHD    YD   VE++
Sbjct: 156 HRHKIDAPSGTALAIGEAIADAKGWDHDKVAVYDRSKVEQA 196

>TOP2M_CAEEL (P34534) Putative DNA topoisomerase II, mitochondrial precursor (EC|
            5.99.1.3)
          Length = 1053

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 14/48 (29%), Positives = 28/48 (58%)
 Frame = +1

Query: 79   LARLTKEQKNAYFDEYDYRVKLLQKKQWKDELRRLKEMKKRGKSDMDA 222
            +A + K  K A    Y Y +++   +   DE++RL+E K R +++++A
Sbjct: 982  MATIAKNSKKA---NYGYLLEMPVSRLTSDEMKRLEERKSRRRTELEA 1026

>ABCF1_MOUSE (Q6P542) ATP-binding cassette sub-family F member 1|
          Length = 837

 Score = 29.6 bits (65), Expect = 9.0
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
 Frame = +1

Query: 154 KQWKDELRRLKEMKKRGKSDMDAYGYA-SIAGENDQDPPPENVSVPLPDMVLPPSFDCDN 330
           KQ++ + ++LKE+K  GKS   A      +     Q    +N      +   PP      
Sbjct: 541 KQYEKQEKKLKELKAGGKSTKQAEKQTKEVLTRKQQKCRRKNQDEESQE---PPELLKRP 597

Query: 331 PTYRYRFLEPTSTVLARPVLDAHGWDHDCGYDG 429
             Y  RF  P    L+ PVL  HG     GY+G
Sbjct: 598 KEYTVRFTFPDPPPLSPPVLGLHGVTF--GYEG 628


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,290,811
Number of Sequences: 219361
Number of extensions: 1811573
Number of successful extensions: 6314
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 6019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6299
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)