ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19d03 |
|---|---|
| Clone Library Name | barley_pub |
>Y397_MYCGE (P47637) Hypothetical protein MG397| Length = 566 Score = 33.5 bits (75), Expect = 0.52 Identities = 41/211 (19%), Positives = 89/211 (42%), Gaps = 12/211 (5%) Frame = +3 Query: 3 LMKIDYQKKVDLLHKQKKRGVKLETLEKTKAAVSHLHTSMANMWSSMHRQHKSQFLIISG 182 L ++ ++ LL K+ + ++ + +EK A ++ LH ++ + +RQ+ + Sbjct: 169 LFYLNVLNRISLLFKEIENCIQAKDVEKQIAFLNKLHNILSQTIITANRQYMFDIKLSYL 228 Query: 183 IRAFEVPPVPRETTDLHYKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISI 362 F+V + +L + +D+++ H + K LN LNL+ Sbjct: 229 THHFKVLIQKVKQMELMKNKVINSQDLLK-LHELINNITIKLKDCTNFLN---NLNLMLC 284 Query: 363 ESNLKE----------KVSSPPRQVEPPIKNLLYAWHDQLERLPV--ELAKTAIKSFTEV 506 E N+ E VSS + + ++N + + +Q+++ EL KT IK+ V Sbjct: 285 ERNMDEVQEAISWLFQAVSSKEKSINLVVEN-IDDFRNQIQQYEKKNELLKTTIKAIELV 343 Query: 507 ISNIVLLQEEEVSLRRRCEETRRDLDRKRAQ 599 N + + + L C+ ++++ Q Sbjct: 344 FQNETDVHDLIIELNENCDLITKNINNLNHQ 374
>PTH_XYLFT (Q87A24) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 192 Score = 32.7 bits (73), Expect = 0.88 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = +1 Query: 184 SELLRY--RLFQGRQLICIISRPVSYVTLSGSGICSLRNLWTIK 309 S+L Y R+F Q + ++ RPV+++ LSG IC+ N W IK Sbjct: 44 SKLFAYVARVFIAGQWVWLL-RPVTFMNLSGKSICAGLNFWKIK 86
>PROA_THICR (Q31IE5) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 32.0 bits (71), Expect = 1.5 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = +3 Query: 501 EVISNIVLLQEEEVSLRRRCEETRRDLDRKRAQFEDW 611 E++ +V L EE+ R CE+TR D K A EDW Sbjct: 273 EILPGLVELYEEKGVELRGCEQTRAICDMKAATEEDW 309
>Y1386_PASMU (Q9CL57) Hypothetical protein PM1386| Length = 112 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%) Frame = -2 Query: 298 ISFSNCIC--HSLTMSRSSQVCL*CKSVVSLGTGGTSKALIPDMIKNWLLC*RCIELHMF 125 + + C+C +S +++SS C +SL + K+LIP ++W+ C C F Sbjct: 27 VRINTCVCTSNSSRVTKSSFANCACNVCLSLASASCPKSLIPCGRESWICCITCSIFFGF 86 Query: 124 AMLVCKWL 101 +++ +L Sbjct: 87 SIIASYFL 94
>POLG_BVDVS (Q01499) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3898 Score = 31.2 bits (69), Expect = 2.6 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 15/116 (12%) Frame = +3 Query: 207 VPRETTDLH-YKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISIESNLKEK 383 VP +H Y+ +L+D+V E EK + IR N W+ L I + NL K Sbjct: 3238 VPARRVKMHPYEAYLKLKDLVEEE----EKKPRIRDTVIREHNKWI-LKKIKFQGNLNTK 3292 Query: 384 VSSPPRQVEPP--------------IKNLLYAWHDQLERLPVELAKTAIKSFTEVI 509 P ++ I ++ + +LE+LP+ A+T KSF E I Sbjct: 3293 KMLNPGKLSEQLDREGHKRNIYNNQISTVMSSAGIRLEKLPIVRAQTDTKSFHEAI 3348
>RAD21_MOUSE (Q61550) Double-strand-break repair protein rad21 homolog (Pokeweed| agglutinin-binding protein 29) (PW29) (SCC1 homolog) Length = 635 Score = 31.2 bits (69), Expect = 2.6 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 9/143 (6%) Frame = +3 Query: 183 IRAFEVPPVPRETTDLHYKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISI 362 ++ FE P VPRE +Q RD++ E ++ + Q + A ++ + + Sbjct: 417 LKEFENPEVPREEQQPQQQQPQPQRDVIDEPIIEEPSRL--QDSVMEASRTTIEESAMPP 474 Query: 363 E--SNLKEKV-------SSPPRQVEPPIKNLLYAWHDQLERLPVELAKTAIKSFTEVISN 515 +K K S PP+QVE Q+E PVEL + ++I Sbjct: 475 PPPQGVKRKAGQIDPEPSIPPQQVE------------QMEIPPVELPPEEPPNICQLIPE 522 Query: 516 IVLLQEEEVSLRRRCEETRRDLD 584 + LL E+E + EE + D Sbjct: 523 LELLPEKEKEKEKEKEEEEEEED 545
>PLCB4_HUMAN (Q15147) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 30.8 bits (68), Expect = 3.4 Identities = 41/197 (20%), Positives = 81/197 (41%), Gaps = 11/197 (5%) Frame = +3 Query: 39 LHKQKKRGVKLETLEKT-KAAVSHLHTSMANMWSSMHRQHKSQFLIISGIRAFEVPPVPR 215 L +K+ +K++TL K+ V + WS M H ++ + Sbjct: 992 LEMKKETEIKIQTLTSDHKSKVKEIVAQHTKEWSEMINTHSAE---------------EQ 1036 Query: 216 ETTDLHYKQTCEL--RDIVREWHMQFEKLM---DHQKGYIRALNAWLKL---NLISIESN 371 E DLH Q CEL + ++ Q ++L D + +RA A + + IS + + Sbjct: 1037 EIRDLHLSQQCELLKKLLINAHEQQTQQLKLSHDRESKEMRAHQAKISMENSKAISQDKS 1096 Query: 372 LKEKVSSPPRQVEPPIKNLLYAWHDQLERLPVELAKTAIKSFTEVISNIVLL--QEEEVS 545 +K K R E N + ++ +RL ++ +K + + ++ L Q E+ Sbjct: 1097 IKNKAERERRVRELNSSN-TKKFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAK 1155 Query: 546 LRRRCEETRRDLDRKRA 596 ++ + ++DR+ A Sbjct: 1156 EMQQMVKLEAEMDRRPA 1172
>PTH_XYLFA (Q9PA78) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 192 Score = 30.0 bits (66), Expect = 5.7 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +1 Query: 202 RLFQGRQLICIISRPVSYVTLSGSGICSLRNLWTIK 309 R+F Q + ++ RPV+++ LSG IC+ + W IK Sbjct: 52 RVFIAGQWVWLL-RPVTFMNLSGKSICAGLSFWKIK 86
>POLG_BVDVC (Q96662) Genome polyprotein [Contains: N-terminal protease (EC| 3.4.22.-) (N-pro) (Autoprotease p20); Capsid protein C; E(rns) glycoprotein (gp44/48); Envelope glycoprotein E1 (gp33); Envelope glycoprotein E2 (gp55); p7; Nonstructural protein 2 Length = 3907 Score = 30.0 bits (66), Expect = 5.7 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Frame = +3 Query: 207 VPRETTDLH-YKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISIESNLK-E 380 +P +H Y+ +L+D++ E EK + IR N W+ L + + NL + Sbjct: 3247 IPARRVKIHPYEAYLKLKDLLEEE----EKKPKCRDTVIREHNKWI-LKKVRHQGNLNTK 3301 Query: 381 KVSSPPRQVEP-------------PIKNLLYAWHDQLERLPVELAKTAIKSFTEVISNIV 521 K+ +P + E I ++ +LE+LPV A+T KSF E I + + Sbjct: 3302 KILNPGKLSEQLDREGHKRNIYNNQIGTIMTEAGSRLEKLPVVRAQTDTKSFHEAIRDKI 3361 Query: 522 LLQEEEVS 545 E + S Sbjct: 3362 DKNENQQS 3369
>NID1_HUMAN (P14543) Nidogen-1 precursor (Entactin)| Length = 1247 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%) Frame = +3 Query: 411 PPIKNLLYAWHDQLERLPVE---LAKTAIKSFTEVISNIVL 524 PP +LL+A ++ERLP+E + KT K+F V + +++ Sbjct: 941 PPGTHLLFAQTGKIERLPLEGNTMRKTEAKAFLHVPAKVII 981
>PLCB4_RAT (Q9QW07) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase| beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C) (Phospholipase C-beta-4) (PLC-beta-4) Length = 1175 Score = 30.0 bits (66), Expect = 5.7 Identities = 42/197 (21%), Positives = 80/197 (40%), Gaps = 11/197 (5%) Frame = +3 Query: 39 LHKQKKRGVKLETLEKT-KAAVSHLHTSMANMWSSMHRQHKSQFLIISGIRAFEVPPVPR 215 L +K+ +K++TL K+ V + WS M H ++ + Sbjct: 992 LEIKKETEIKIQTLTSDHKSKVKEIVAQHTKEWSEMINTHSAE---------------EQ 1036 Query: 216 ETTDLHYKQTCE-LRDIVREWH----MQFEKLMDHQKGYIRALNAWLKL---NLISIESN 371 E DLH Q CE LR ++ H Q + D + +RA A + + IS + + Sbjct: 1037 EIRDLHLSQQCELLRKLLINAHEQQTQQLKLSHDRESKEMRAHQAKISMENSKAISQDKS 1096 Query: 372 LKEKVSSPPRQVEPPIKNLLYAWHDQLERLPVELAKTAIKSFTEVISNIVLL--QEEEVS 545 +K K R E N + ++ +RL ++ +K + + ++ L Q E+ Sbjct: 1097 IKNKAERERRVRELNSSN-TKKFLEERKRLAMKQSKEMDQLKKVQLEHLEFLEKQNEQAK 1155 Query: 546 LRRRCEETRRDLDRKRA 596 ++ + ++DR+ A Sbjct: 1156 EMQQMVKLEAEMDRRPA 1172
>GAG_SFV1 (Q00071) Gag polyprotein (Core polyprotein)| Length = 647 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/67 (28%), Positives = 30/67 (44%) Frame = +3 Query: 198 VPPVPRETTDLHYKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISIESNLK 377 +PP +E T + + E+ D+V + MQ L+ Q IR L L+ + NL Sbjct: 124 LPPAMQEITQMQRDELEEVLDVVGQITMQMNDLIGMQDAQIRGLEGQLR----GLRGNLP 179 Query: 378 EKVSSPP 398 + PP Sbjct: 180 VAGTPPP 186
>KIF5A_PONPY (Q5R9K7) Kinesin heavy chain isoform 5A| Length = 1032 Score = 30.0 bits (66), Expect = 5.7 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Frame = +3 Query: 225 DLHYKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQ 404 + H++Q LRD + E ++L D LN L+L L ++++ EK+ S + Sbjct: 708 EAHHRQLARLRDEINEKQKTIDELKD--------LNQKLQLELEKLQADY-EKLKSEEHE 758 Query: 405 VEPPIKNL--LYAWHDQLERLPVELAKTAIKSFTEVISNIVLLQEEEVSLR 551 ++ L LY H+Q ++ L +T + + + N+ L ++V+ R Sbjct: 759 KSTKLQELTFLYERHEQSKQDLKGLEETVAREL-QTLHNLRKLFVQDVTTR 808
>KIF5A_HUMAN (Q12840) Kinesin heavy chain isoform 5A (Neuronal kinesin heavy| chain) (NKHC) (Kinesin heavy chain neuron-specific 1) Length = 1032 Score = 30.0 bits (66), Expect = 5.7 Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Frame = +3 Query: 225 DLHYKQTCELRDIVREWHMQFEKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQ 404 + H++Q LRD + E ++L D LN L+L L ++++ EK+ S + Sbjct: 708 EAHHRQLARLRDEINEKQKTIDELKD--------LNQKLQLELEKLQADY-EKLKSEEHE 758 Query: 405 VEPPIKNL--LYAWHDQLERLPVELAKTAIKSFTEVISNIVLLQEEEVSLR 551 ++ L LY H+Q ++ L +T + + + N+ L ++V+ R Sbjct: 759 KSTKLQELTFLYERHEQSKQDLKGLEETVAREL-QTLHNLRKLFVQDVTTR 808
>OTC_HELHP (Q7VHJ0) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 329 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +3 Query: 12 IDYQKKVDLLHKQK----KRGVKLETLEKTKAAVSHLHTSMANMWSSMHRQHKSQ 164 I Y K D++ K + + G K++ L K AVS+ + + + W+SM ++ + + Sbjct: 196 IGYAPKADIITKAQDMCIQSGGKIKILNDAKEAVSNANVVVTDTWASMGQEEQKE 250
>PTH_NOCFA (Q5YPZ6) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 193 Score = 29.6 bits (65), Expect = 7.5 Identities = 16/42 (38%), Positives = 29/42 (69%) Frame = +1 Query: 181 GSELLRYRLFQGRQLICIISRPVSYVTLSGSGICSLRNLWTI 306 G++LL+ RL GRQ++ I++P SY+ LSG + +L +++ Sbjct: 51 GADLLQARL-DGRQVL--IAKPRSYMNLSGRPVAALARFFSV 89
>PURA_LEPIN (Q8F738) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 425 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +3 Query: 282 QFEKLMDHQKGYIRALNAWL--KLNLISIESNLKEKV 386 +F+KL + K YI AL W+ K+NL+S + K+ + Sbjct: 384 EFQKLPEKCKNYISALEKWIGVKINLVSTGPDRKDTI 420
>PURA_LEPIC (Q72PA7) Adenylosuccinate synthetase (EC 6.3.4.4) (IMP--aspartate| ligase) (AdSS) (AMPSase) Length = 425 Score = 29.6 bits (65), Expect = 7.5 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +3 Query: 282 QFEKLMDHQKGYIRALNAWL--KLNLISIESNLKEKV 386 +F+KL + K YI AL W+ K+NL+S + K+ + Sbjct: 384 EFQKLPEKCKNYISALEKWIGVKINLVSTGPDRKDTI 420
>CAND1_RAT (P97536) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +3 Query: 288 EKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQVEPPIKNLLYAWHDQLERLPV 467 E L+ KGY+ + +++ + ++++ +K +S P+ ++P +KN + + LE + Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTA---VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020 Query: 468 ELAKTAIKSFTEVISN 515 + + A+ +F N Sbjct: 1021 NVRRVALVTFNSAAHN 1036
>CAND1_PONPY (Q5R6L5) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +3 Query: 288 EKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQVEPPIKNLLYAWHDQLERLPV 467 E L+ KGY+ + +++ + ++++ +K +S P+ ++P +KN + + LE + Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTA---VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020 Query: 468 ELAKTAIKSFTEVISN 515 + + A+ +F N Sbjct: 1021 NVRRVALVTFNSAAHN 1036
>CAND1_MOUSE (Q6ZQ38) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) Length = 1230 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +3 Query: 288 EKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQVEPPIKNLLYAWHDQLERLPV 467 E L+ KGY+ + +++ + ++++ +K +S P+ ++P +KN + + LE + Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTA---VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020 Query: 468 ELAKTAIKSFTEVISN 515 + + A+ +F N Sbjct: 1021 NVRRVALVTFNSAAHN 1036
>CAND1_HUMAN (Q86VP6) Cullin-associated NEDD8-dissociated protein 1| (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) (TBP-interacting protein TIP120A) (TBP-interacting protein of 120 kDa A) Length = 1230 Score = 29.3 bits (64), Expect = 9.8 Identities = 16/76 (21%), Positives = 40/76 (52%) Frame = +3 Query: 288 EKLMDHQKGYIRALNAWLKLNLISIESNLKEKVSSPPRQVEPPIKNLLYAWHDQLERLPV 467 E L+ KGY+ + +++ + ++++ +K +S P+ ++P +KN + + LE + Sbjct: 964 ETLLPRLKGYLISGSSYARSSVVTA---VKFTISDHPQPIDPLLKNCIGDFLKTLEDPDL 1020 Query: 468 ELAKTAIKSFTEVISN 515 + + A+ +F N Sbjct: 1021 NVRRVALVTFNSAAHN 1036
>ERFB_EMENI (Q5B3W7) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich| domain-containing protein erf2) (Ras protein acyltransferase) Length = 601 Score = 29.3 bits (64), Expect = 9.8 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = -3 Query: 258 HVAHRSAYNANQLSPLEQAVPQKL*SPI*SKTGSCVDGA*NSTCLPCLCASG*RRPLSSQ 79 HV HR + + P ++ S I ++ GS + T +P L ASG RP+SSQ Sbjct: 56 HVPHRHSVSRRGPPPARSSIAST--SQITNRPGSSASRL-SRTHIPSLAASGFFRPMSSQ 112 Query: 78 EFQ 70 Q Sbjct: 113 RLQ 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,298,957 Number of Sequences: 219361 Number of extensions: 1767883 Number of successful extensions: 5498 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5496 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
