ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19c10 |
|---|---|
| Clone Library Name | barley_pub |
>NDK_RHOPA (Q6N5C3) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP| kinase) (Nucleoside-2-P kinase) Length = 140 Score = 33.1 bits (74), Expect = 0.63 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 2/103 (1%) Frame = +2 Query: 161 EYNVSFGNPDIEEKPPM-SLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKEL 337 E S PD E+ ++ +++K IVA + I+ + E V + P EL Sbjct: 4 ERTFSILKPDATERNITGAINALIEKAGLRIVAQKRIRMTRDQAETFYAVHKERPFFGEL 63 Query: 338 ID-MYSGPDVVTAIQQEGELQRVANTLPENIPNSVKRFTDKTL 463 +D M SGP VV ++ EG + + + + P+ T + L Sbjct: 64 VDFMISGPVVVQVLEGEGAIAKYRDVMGATDPSKAADGTIRKL 106
>NDK_NITWN (Q3SS79) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP| kinase) (Nucleoside-2-P kinase) Length = 140 Score = 32.3 bits (72), Expect = 1.1 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%) Frame = +2 Query: 212 SLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKELID-MYSGPDVVTAIQQEG 388 ++ +++K IVA + I+ E E V + P EL+D M SGP VV ++ EG Sbjct: 22 AINALIEKAGLRIVAQKRIRMTREQAETFYAVHKARPFFGELVDFMISGPVVVQVLEGEG 81 Query: 389 ELQRVANTLPENIPNSVKRFTDKTL 463 + + + + P+ T + L Sbjct: 82 AILKYRDIMGATDPSKAADGTIRKL 106
>LON_BRECH (P36772) ATP-dependent protease La (EC 3.4.21.53)| Length = 779 Score = 32.3 bits (72), Expect = 1.1 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Frame = +2 Query: 215 LEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMER-APHMKELIDMYS--GPDVVTAIQQE 385 +EE LQK F+V+ ++ ++ E V+ +M H ++ I + P+ +T++Q Sbjct: 99 IEEYLQKEDYFVVSITYLKEEKAEENEVEALMRSLLTHFEQYIKLSKKVSPETLTSVQDI 158 Query: 386 GELQRVANTLPENIPNSVK 442 E R+A+ + ++P +K Sbjct: 159 EEPGRLADVIASHLPLKMK 177
>NASR_KLEOX (Q48468) Nitrate regulatory protein| Length = 396 Score = 31.6 bits (70), Expect = 1.8 Identities = 11/46 (23%), Positives = 26/46 (56%) Frame = +2 Query: 200 KPPMSLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKEL 337 K + ++++K K ++ Y+G+Q ++ W+ K M++ M E+ Sbjct: 334 KDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMDKNQRMVEI 379
>SLIT_DROME (P24014) Protein slit precursor [Contains: Protein slit N-product;| Protein slit C-product] Length = 1504 Score = 30.4 bits (67), Expect = 4.1 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 230 QKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKE 334 QK+ P EG Q +EE +E +D M+ PH+KE Sbjct: 1343 QKITPGCALLEGEQQEEEDDE--QDFMDETPHIKE 1375
>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking| family 7) Length = 5327 Score = 30.4 bits (67), Expect = 4.1 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Frame = +2 Query: 194 EEKPPMSLEEM--LQKVKPFIVAYEGI-QNQEEWEEAVKDVMERAPHMKELIDMYSGPDV 364 EE P + E + + ++ P V +E + Q QEE + + + E PH+ +++ + GP + Sbjct: 3722 EELSPWAEETLALIAQLPPPAVDHEQLRQQQEEMRQLRESIAEHKPHIDKILKI--GPQL 3779 Query: 365 VTAIQQEGELQRVANTLPENIPNSVKRFTDKTLLSLKNNPGWGFDRKCQFMDK 523 +EG++ EN+ +K + L+L + QF DK Sbjct: 3780 KELNPEEGKMVEEKYQKAENMYAQIKDEVRQRALALDE----AVSQSAQFHDK 3828
>MACF1_HUMAN (Q9UPN3) Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5| (Actin cross-linking family protein 7) (Macrophin-1) (Trabeculin-alpha) (620 kDa actin-binding protein) (ABP620) Length = 5430 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +2 Query: 269 QNQEEWEEAVKDVMERAPHMKELIDMYSGPDVVTAIQQEGELQRVANTLPENIPNSVKRF 448 Q QEE + + + E PH+ +L+ + GP + +EGE+ EN+ +K Sbjct: 3860 QQQEEMRQLRESIAEHKPHIDKLLKI--GPQLKELNPEEGEMVEEKYQKAENMYAQIKEE 3917 Query: 449 TDKTLLSL 472 + L+L Sbjct: 3918 VRQRALAL 3925
>HAK13_ORYSA (Q652J4) Probable potassium transporter 13 (OsHAK13)| Length = 778 Score = 30.0 bits (66), Expect = 5.3 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 9/79 (11%) Frame = +3 Query: 375 YNKKGSCKE------LPTLFQKTYPIQ*SGLLIKLYSLSRIILAGVLTGSVN---SWTSL 527 YNK+ CKE + F+K Y ++ LL L S +I GVLT +++ + + L Sbjct: 130 YNKEEPCKESRNSMLIKAFFEKHYSLRVVLLLFVLMGTSMVIGDGVLTPTMSVLAAVSGL 189 Query: 528 SVKFQNSTSKSLLIHCCKI 584 +KF ++ C I Sbjct: 190 RIKFPELHENYTVLLACVI 208
>MACF4_HUMAN (Q96PK2) Microtubule-actin crosslinking factor 1, isoform 4| Length = 5938 Score = 30.0 bits (66), Expect = 5.3 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = +2 Query: 269 QNQEEWEEAVKDVMERAPHMKELIDMYSGPDVVTAIQQEGELQRVANTLPENIPNSVKRF 448 Q QEE + + + E PH+ +L+ + GP + +EGE+ EN+ +K Sbjct: 4362 QQQEEMRQLRESIAEHKPHIDKLLKI--GPQLKELNPEEGEMVEEKYQKAENMYAQIKEE 4419 Query: 449 TDKTLLSL 472 + L+L Sbjct: 4420 VRQRALAL 4427
>NDK_BRAJA (Q89MS3) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP| kinase) (Nucleoside-2-P kinase) Length = 140 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%) Frame = +2 Query: 212 SLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKELID-MYSGPDVVTAIQQEG 388 ++ +++K IVA + I+ +E E V + P EL++ M SGP VV ++ E Sbjct: 22 AVNAVIEKAGLRIVAQKRIRMTKEQAETFYAVHKARPFFGELVEFMTSGPVVVQVLEGEN 81 Query: 389 ELQRVANTLPENIPNSVKRFTDKTLL--SLKNNPGWGFD 499 + + + + P+ T + L S+ N G D Sbjct: 82 AVAKYRDAMGATDPSKAAEGTIRKLYAKSIGENSAHGSD 120
>GLYG4_SOYBN (P02858) Glycinin G4 precursor [Contains: Glycinin A5 subunit;| Glycinin A4 subunit; Glycinin B3 subunit] Length = 562 Score = 30.0 bits (66), Expect = 5.3 Identities = 21/60 (35%), Positives = 28/60 (46%) Frame = +2 Query: 113 ALLDAIHTNNMIEFEPEYNVSFGNPDIEEKPPMSLEEMLQKVKPFIVAYEGIQNQEEWEE 292 +LLD + NN ++ P GNPDIE M + Q+ K +G QEE EE Sbjct: 169 SLLDTSNFNNQLDQTPRVFYLAGNPDIEYPETM---QQQQQQKSHGGRKQGQHQQEEEEE 225
>NDK_LEGPA (Q5X515) Nucleoside diphosphate kinase (EC 2.7.4.6) (NDK) (NDP| kinase) (Nucleoside-2-P kinase) Length = 141 Score = 29.6 bits (65), Expect = 6.9 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Frame = +2 Query: 161 EYNVSFGNPDIEEKPPMS-LEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKEL 337 E +S PD K + + +K IVA + IQ E E+ D+ P K+L Sbjct: 4 ELTLSIIKPDAVAKSVIGEIYTRFEKAGLDIVAAKMIQLSREQAESFYDIHRARPFFKDL 63 Query: 338 ID-MYSGPDVVTAIQQEGELQR 400 +D M SGP ++ ++ + + + Sbjct: 64 VDFMISGPVMIQVLKGDNAVAK 85
>MBD2_MOUSE (Q9Z2E1) Methyl-CpG-binding domain protein 2 (Methyl-CpG-binding| protein MBD2) Length = 414 Score = 29.6 bits (65), Expect = 6.9 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 10/67 (14%) Frame = +2 Query: 191 IEEKPPMSLEEMLQKVKPFIVAYEGIQNQEEWEEAVK---------DVMERAPHMKEL-I 340 +E+ P + L K FIV E I+ QEE + V+ D++ RA +E+ I Sbjct: 347 VEKNPAVWLNTSQPLCKAFIVTDEDIRKQEERVQQVRKKLEEALMADILSRAADTEEVDI 406 Query: 341 DMYSGPD 361 DM SG + Sbjct: 407 DMDSGDE 413
>YZ11_AQUAE (O66405) Hypothetical protein aq_aa11| Length = 318 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/63 (26%), Positives = 30/63 (47%) Frame = +2 Query: 188 DIEEKPPMSLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKELIDMYSGPDVV 367 DIEEK +++ ++K + + W+E+ K E +KE+I Y PD++ Sbjct: 46 DIEEKKIVNVHVPVKKENLVL------ELDRHWKESKKREKELEKRLKEIISEYKNPDLI 99 Query: 368 TAI 376 I Sbjct: 100 REI 102
>RGYR_THEMA (O51934) Reverse gyrase [Includes: Helicase (EC 3.6.1.-);| Topoisomerase (EC 5.99.1.3)] Length = 1104 Score = 29.3 bits (64), Expect = 9.1 Identities = 22/76 (28%), Positives = 33/76 (43%) Frame = +2 Query: 182 NPDIEEKPPMSLEEMLQKVKPFIVAYEGIQNQEEWEEAVKDVMERAPHMKELIDMYSGPD 361 NPD+EE ++ E + QK E+ E VK++ E +++ PD Sbjct: 418 NPDVEELRKIAKEHLTQK---------------EFVEKVKEMFRGVVVKDEDLELII-PD 461 Query: 362 VVTAIQQEGELQRVAN 409 V T IQ G R+ N Sbjct: 462 VYTYIQASGRSSRILN 477
>C25HL_CAEBR (Q618G2) Cholesterol 25-hydroxylase-like protein (EC 1.14.99.-)| Length = 300 Score = 29.3 bits (64), Expect = 9.1 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Frame = -1 Query: 445 PLY*IGYVFWKSVGNSLQLPFLLYCSYDIRPTVHIYQLFHMGCPFHDIFH-----GFLPF 281 P + + Y W V S+ + ++ YD +H F+ G P HD+ H F P+ Sbjct: 200 PTHCLTYWLWFFVAQSVS--YEVHIGYDFPFALHRIFWFYSGAPAHDMHHLRPLTCFQPW 257 Query: 280 FLVLD 266 F LD Sbjct: 258 FNYLD 262
>ZN546_HUMAN (Q86UE3) Zinc finger protein 546| Length = 836 Score = 29.3 bits (64), Expect = 9.1 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 11/80 (13%) Frame = +2 Query: 272 NQEEWEEAVKDVMERAPHMKELIDMYSG----------PDVVTAIQQEGELQRVANTLPE 421 +QEEWE D ++R + +++ YS PDV+T ++QE E V Sbjct: 70 SQEEWE--CLDAVQRDLYKDVMLENYSNLVSLGYTIPKPDVITLLEQEKEPWIVMREGTR 127 Query: 422 NIPNSVK-RFTDKTLLSLKN 478 N ++ ++ K LLS KN Sbjct: 128 NWFTDLEYKYITKNLLSEKN 147
>Y2074_CLOPE (Q8XIP1) Putative reductase CPE2074 (EC 1.3.1.-)| Length = 389 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 284 WEEAVKDVMERAPHMKELIDMYSGPDVVTAIQQEGELQRVANTL 415 W EA+K+ +K + Y GP+V I +EG + R N L Sbjct: 203 WIEALKEANVLENGVKTIAYSYIGPEVTYPIYREGTIGRAKNDL 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,800,536 Number of Sequences: 219361 Number of extensions: 1682698 Number of successful extensions: 5324 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5132 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5322 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
