ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19c10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
2dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic D... 222 1e-54
3gb|AY112168.1| Zea mays CL8889_1 mRNA sequence 194 2e-46
4ref|NM_104242.2| Arabidopsis thaliana unknown protein AT1G53645 ... 48 0.034
5gb|AY143929.1| Arabidopsis thaliana At1g53640/F22G10.8 mRNA, com... 48 0.034
6gb|AY057673.1| Arabidopsis thaliana At1g53640/F22G10.8 mRNA, com... 48 0.034
7gb|AY088114.1| Arabidopsis thaliana clone 41453 mRNA, complete s... 48 0.034
8dbj|AK176195.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 48 0.034
9dbj|AK176180.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 48 0.034
10gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
11gb|AC137839.19| Medicago truncatula clone mth2-34j11, complete s... 42 2.1
12gb|AC147483.13| Medicago truncatula clone mth2-22o7, complete se... 42 2.1
13gb|AF348536.1| Aruncus dioicus chloroplast tRNA-Leu (trnL) gene,... 42 2.1
14emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 i... 42 2.1
15gb|U15731.2|BTU15731 Bos taurus somatotropin receptor gene, exon... 42 2.1
16gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome ... 42 2.1
17gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosom... 42 2.1
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.1
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.1
20gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, comp... 40 8.2
21gb|AC115798.14| Mus musculus chromosome 8, clone RP23-406D18, co... 40 8.2
22emb|CR762415.10| Zebrafish DNA sequence from clone CH211-39K23 i... 40 8.2
23gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, comple... 40 8.2
24gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, co... 40 8.2
25emb|AL390844.12| Human DNA sequence from clone RP11-255N24 on ch... 40 8.2
26emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chr... 40 8.2
27emb|AL355810.10| Human DNA sequence from clone RP11-40E6 on chro... 40 8.2
28gb|AC124080.15| Mus musculus chromosome 3, clone RP24-380G11, co... 40 8.2
29emb|CR377201.10| Zebrafish DNA sequence from clone CH211-210H21 ... 40 8.2
30emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 i... 40 8.2
31emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in... 40 8.2
32dbj|AK056610.1| Homo sapiens cDNA FLJ32048 fis, clone NTONG2001173 40 8.2
33emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on c... 40 8.2
34emb|BX294126.10| Zebrafish DNA sequence from clone DKEYP-35B8 in... 40 8.2
35gb|AC155819.2| Mus musculus BAC clone RP23-402F16 from chromosom... 40 8.2
36gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22... 40 8.2
37gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 8.2
38gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thali... 40 8.2
39emb|X97305.1|SCSCY1GEN S.cerevisiae SCY1 gene 40 8.2
40emb|Z72605.1|SCYGL083W S.cerevisiae chromosome VII reading frame... 40 8.2
41emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, ... 40 8.2 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  222 bits (112), Expect = 1e-54
 Identities = 166/184 (90%)
 Strand = Plus / Minus

                                                                            
Query: 288      aggaagccgtgaaagatgtcatggaaagggcaccccatatgaaagagctgatagatatgt 347
                ||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct: 27059043 aggaagctgtgaaagatgtaatggcaagggcaccccatatgaaggagctgatagatatgt 27058984

                                                                            
Query: 348      acagtgggcctgatgtcgtaactgcaatacaacaagaaggggagctgcaaagagttgcca 407
                ||||||| |||||||| ||||||||||  ||||||||||  |||||||||||||| ||||
Sbjct: 27058983 acagtggccctgatgttgtaactgcaaagcaacaagaagaagagctgcaaagagtggcca 27058924

                                                                            
Query: 408      acactcttccagaaaacatacccaattcagtaaagcggtttactgataaaactttactct 467
                ||||||| |||| ||| ||||||  |||||||||||||||||||||||||||| |||| |
Sbjct: 27058923 acactctcccaggaaatataccctcttcagtaaagcggtttactgataaaactctactgt 27058864

                    
Query: 468      ctct 471
                ||||
Sbjct: 27058863 ctct 27058860



 Score =  131 bits (66), Expect = 3e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                            
Query: 149      gagtttgagccagagtacaatgtgagctttggtaatcctgatattgaggagaagccgcca 208
                |||||||||||||||||  ||||||  ||   |||||| ||||| || |||||||| || 
Sbjct: 27060173 gagtttgagccagagtatcatgtgaatttcaataatccagatatcgaagagaagccacct 27060114

                                                                            
Query: 209      atgtcattggaggagatgctgcagaaagtaaagccattcatagttgcttatgaaggcatc 268
                |||||||||||||| ||||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 27060113 atgtcattggaggatatgctacagaaggtgaagccattcatagttgcgtatgagggcatc 27060054

                                      
Query: 269      cagaaccaggaagaatgggagg 290
                ||||||||||| ||||||||||
Sbjct: 27060053 cagaaccaggaggaatgggagg 27060032



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 105/123 (85%), Gaps = 1/123 (0%)
 Strand = Plus / Minus

                                                                            
Query: 474      agaataatcctggctggggttttgacaggaagtgtcaattcatggacaagtttgtccgtg 533
                |||| ||||| |||||||||||||||| ||| || |||||||||||||||||||  ||||
Sbjct: 27058084 agaacaatccaggctggggttttgacaagaaatgccaattcatggacaagtttgctcgtg 27058025

                                                                            
Query: 534      aagtttcagaacagtacaagtaaaagccttcttatacactgttgtaagatctcatttagc 593
                |||||||||| |  ||||| || ||  | ||  ||||||||||||||||||||| |||||
Sbjct: 27058024 aagtttcagagctatacaaatagaaaac-tcccatacactgttgtaagatctcacttagc 27057966

                   
Query: 594      ccc 596
                |||
Sbjct: 27057965 ccc 27057963
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>dbj|AP003628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0473H04
          Length = 155204

 Score =  222 bits (112), Expect = 1e-54
 Identities = 166/184 (90%)
 Strand = Plus / Minus

                                                                         
Query: 288   aggaagccgtgaaagatgtcatggaaagggcaccccatatgaaagagctgatagatatgt 347
             ||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||
Sbjct: 27853 aggaagctgtgaaagatgtaatggcaagggcaccccatatgaaggagctgatagatatgt 27794

                                                                         
Query: 348   acagtgggcctgatgtcgtaactgcaatacaacaagaaggggagctgcaaagagttgcca 407
             ||||||| |||||||| ||||||||||  ||||||||||  |||||||||||||| ||||
Sbjct: 27793 acagtggccctgatgttgtaactgcaaagcaacaagaagaagagctgcaaagagtggcca 27734

                                                                         
Query: 408   acactcttccagaaaacatacccaattcagtaaagcggtttactgataaaactttactct 467
             ||||||| |||| ||| ||||||  |||||||||||||||||||||||||||| |||| |
Sbjct: 27733 acactctcccaggaaatataccctcttcagtaaagcggtttactgataaaactctactgt 27674

                 
Query: 468   ctct 471
             ||||
Sbjct: 27673 ctct 27670



 Score =  131 bits (66), Expect = 3e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                         
Query: 149   gagtttgagccagagtacaatgtgagctttggtaatcctgatattgaggagaagccgcca 208
             |||||||||||||||||  ||||||  ||   |||||| ||||| || |||||||| || 
Sbjct: 28983 gagtttgagccagagtatcatgtgaatttcaataatccagatatcgaagagaagccacct 28924

                                                                         
Query: 209   atgtcattggaggagatgctgcagaaagtaaagccattcatagttgcttatgaaggcatc 268
             |||||||||||||| ||||| ||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 28923 atgtcattggaggatatgctacagaaggtgaagccattcatagttgcgtatgagggcatc 28864

                                   
Query: 269   cagaaccaggaagaatgggagg 290
             ||||||||||| ||||||||||
Sbjct: 28863 cagaaccaggaggaatgggagg 28842



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 105/123 (85%), Gaps = 1/123 (0%)
 Strand = Plus / Minus

                                                                         
Query: 474   agaataatcctggctggggttttgacaggaagtgtcaattcatggacaagtttgtccgtg 533
             |||| ||||| |||||||||||||||| ||| || |||||||||||||||||||  ||||
Sbjct: 26894 agaacaatccaggctggggttttgacaagaaatgccaattcatggacaagtttgctcgtg 26835

                                                                         
Query: 534   aagtttcagaacagtacaagtaaaagccttcttatacactgttgtaagatctcatttagc 593
             |||||||||| |  ||||| || ||  | ||  ||||||||||||||||||||| |||||
Sbjct: 26834 aagtttcagagctatacaaatagaaaac-tcccatacactgttgtaagatctcacttagc 26776

                
Query: 594   ccc 596
             |||
Sbjct: 26775 ccc 26773



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 51/61 (83%)
 Strand = Plus / Minus

                                                                         
Query: 44    aagatgaagatttgggacgaggcgttcgatgaggcagcagatgaggcactgccacacccg 103
             |||||||||||||   |||| ||||| |||||||| |||||| | || |||||| |||||
Sbjct: 29195 aagatgaagatttttaacgaagcgtttgatgaggccgcagataacgcgctgccagacccg 29136

              
Query: 104   a 104
             |
Sbjct: 29135 a 29135
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>gb|AY112168.1| Zea mays CL8889_1 mRNA sequence
          Length = 629

 Score =  194 bits (98), Expect = 2e-46
 Identities = 191/224 (85%)
 Strand = Plus / Minus

                                                                       
Query: 140 aacatgattgagtttgagccagagtacaatgtgagctttggtaatcctgatattgaggag 199
           |||||||| ||||||||||| |||||| ||||||  ||||||||||||||||||   || 
Sbjct: 591 aacatgatcgagtttgagccggagtaccatgtgaattttggtaatcctgatattattgat 532

                                                                       
Query: 200 aagccgccaatgtcattggaggagatgctgcagaaagtaaagccattcatagttgcttat 259
            | || |||||||| |||||||||||||| ||||| || ||||||||  ||||||| |||
Sbjct: 531 gaaccaccaatgtcgttggaggagatgcttcagaaggtgaagccatttgtagttgcatat 472

                                                                       
Query: 260 gaaggcatccagaaccaggaagaatgggaggaagccgtgaaagatgtcatggaaagggca 319
           || |||||||||||||||||||||||||||||||| ||||||||||| ||||  || |  
Sbjct: 471 gagggcatccagaaccaggaagaatgggaggaagctgtgaaagatgtaatggctagagnn 412

                                                       
Query: 320 ccccatatgaaagagctgatagatatgtacagtgggcctgatgt 363
               ||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 411 nnnnatatgaaagagctcatagatatgtacagtggacctgatgt 368



 Score =  157 bits (79), Expect = 5e-35
 Identities = 118/131 (90%)
 Strand = Plus / Minus

                                                                       
Query: 394 gcaaagagttgccaacactcttccagaaaacatacccaattcagtaaagcggtttactga 453
           |||||||||||| |||||||||||||||| ||| ||   |||||||||||||||||||||
Sbjct: 337 gcaaagagttgcaaacactcttccagaaagcatcccttcttcagtaaagcggtttactga 278

                                                                       
Query: 454 taaaactttactctctctcaagaataatcctggctggggttttgacaggaagtgtcaatt 513
            |||||| |||||||||| ||||| |||||||||||||||||||||| ||| || |||||
Sbjct: 277 caaaactctactctctcttaagaacaatcctggctggggttttgacaagaaatgccaatt 218

                      
Query: 514 catggacaagt 524
           |||||||||||
Sbjct: 217 catggacaagt 207
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>ref|NM_104242.2| Arabidopsis thaliana unknown protein AT1G53645 mRNA, complete cds
          Length = 1881

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1303 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1358
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>gb|AY143929.1| Arabidopsis thaliana At1g53640/F22G10.8 mRNA, complete cds
          Length = 1572

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1255 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1310
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>gb|AY057673.1| Arabidopsis thaliana At1g53640/F22G10.8 mRNA, complete cds
          Length = 1881

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1303 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1358
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>gb|AY088114.1| Arabidopsis thaliana clone 41453 mRNA, complete sequence
          Length = 1870

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1303 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1358
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>dbj|AK176195.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-06-N03
          Length = 1908

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1297 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1352
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>dbj|AK176180.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-04-N18
          Length = 1911

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                    
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggaggaagc 294
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||||||
Sbjct: 1300 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggaggaagc 1355
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>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0054A16, complete sequence
          Length = 164605

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 363   tcgtaactgcaatacaacaagaagg 387
             |||||||||||| ||||||||||||
Sbjct: 42772 tcgtaactgcaacacaacaagaagg 42796
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>gb|AC137839.19| Medicago truncatula clone mth2-34j11, complete sequence
          Length = 145073

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 479    aatcctggctggggttttgacaggaagtgtcaattcatgga 519
              ||||| |||||||| ||||||| ||| || |||||||||||
Sbjct: 113880 aatccaggctggggatttgacaagaaatgccaattcatgga 113840
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>gb|AC147483.13| Medicago truncatula clone mth2-22o7, complete sequence
          Length = 142205

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 479   aatcctggctggggttttgacaggaagtgtcaattcatgga 519
             ||||| |||||||| ||||||| ||| || |||||||||||
Sbjct: 28330 aatccaggctggggatttgacaagaaatgccaattcatgga 28370
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>gb|AF348536.1| Aruncus dioicus chloroplast tRNA-Leu (trnL) gene, partial sequence;
           trnL-trnF intergenic spacer region, complete sequence;
           and tRNA-Phe (trnF) gene, partial sequence
          Length = 1013

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 532 tgaagtttcagaacagtacaagtaa 556
           ||||||||||| |||||||||||||
Sbjct: 819 tgaagtttcagtacagtacaagtaa 795
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>emb|BX322796.12| Zebrafish DNA sequence from clone DKEY-210F16 in linkage group 17,
             complete sequence
          Length = 68234

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    cagatgaggcactgccacacc 101
             |||||||||||||||||||||
Sbjct: 52606 cagatgaggcactgccacacc 52586
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>gb|U15731.2|BTU15731 Bos taurus somatotropin receptor gene, exon 1 and liver-specific
             promoter region
          Length = 25688

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   atgtcatggaaagggcacccc 323
             |||||||||||||||||||||
Sbjct: 17418 atgtcatggaaagggcacccc 17438
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>gb|AC158534.2| Mus musculus BAC clone RP23-32O6 from chromosome 7, complete sequence
          Length = 242359

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 277   ggaagaatgggaggaagccgtgaaa 301
             ||||||||||||||||||| |||||
Sbjct: 41616 ggaagaatgggaggaagccctgaaa 41592
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>gb|AC131791.4| Mus musculus BAC clone RP24-462N24 from chromosome 7, complete sequence
          Length = 178072

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 277   ggaagaatgggaggaagccgtgaaa 301
             ||||||||||||||||||| |||||
Sbjct: 58256 ggaagaatgggaggaagccctgaaa 58232
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 363      tcgtaactgcaatacaacaagaagg 387
                |||||||||||| ||||||||||||
Sbjct: 15429097 tcgtaactgcaacacaacaagaagg 15429121
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 363      tcgtaactgcaatacaacaagaagg 387
                |||||||||||| ||||||||||||
Sbjct: 15511909 tcgtaactgcaacacaacaagaagg 15511933
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>gb|AC100043.9| Mus musculus chromosome 3, clone RP23-32D13, complete sequence
          Length = 234931

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 452    gataaaactttactctctct 471
              ||||||||||||||||||||
Sbjct: 197604 gataaaactttactctctct 197585
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>gb|AC115798.14| Mus musculus chromosome 8, clone RP23-406D18, complete sequence
          Length = 225828

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 184   tcctgatattgaggagaagc 203
             ||||||||||||||||||||
Sbjct: 94530 tcctgatattgaggagaagc 94511
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>emb|CR762415.10| Zebrafish DNA sequence from clone CH211-39K23 in linkage group 1,
             complete sequence
          Length = 179253

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   agtttcagaacagtacaagt 554
             ||||||||||||||||||||
Sbjct: 56485 agtttcagaacagtacaagt 56504
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>gb|AC114002.4| Mus musculus BAC clone RP23-165H7 from 12, complete sequence
          Length = 200112

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 152    tttgagccagagtacaatgtgagctttg 179
              ||||||||| || |||||||||||||||
Sbjct: 120950 tttgagccaaagcacaatgtgagctttg 120977
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>gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, complete sequence
          Length = 244819

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cagaaccaggaagaatggga 288
              ||||||||||||||||||||
Sbjct: 158545 cagaaccaggaagaatggga 158564
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>emb|AL390844.12| Human DNA sequence from clone RP11-255N24 on chromosome 9p13.3-21.3
             Contains a CMT1A duplicated region transcript 15 (CDRT15)
             pseudogene, a pseudogene similar to part of solute carrier
             family 4 (anion exchanger), member 1, adaptor protein
             (SLC4A1AP), a novel pseudogene and a RNA binding motif
             protein, X chromosome (RBMX) (HNRPG) pseudogene, complete
             sequence
          Length = 163677

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   ggaggaagccgtgaaagatg 305
             ||||||||||||||||||||
Sbjct: 56029 ggaggaagccgtgaaagatg 56010
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>emb|AL390739.8| Human DNA sequence from clone RP11-157F14 on chromosome 13 Contains two
              CpG islands, complete sequence
          Length = 123887

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 275    caggaagaatgggaggaagc 294
              ||||||||||||||||||||
Sbjct: 105201 caggaagaatgggaggaagc 105182
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>emb|AL355810.10| Human DNA sequence from clone RP11-40E6 on chromosome 13, complete
             sequence
          Length = 103749

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 551   aagtaaaagccttcttatacactg 574
             |||||||||||| |||||||||||
Sbjct: 85828 aagtaaaagcctgcttatacactg 85851
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>gb|AC124080.15| Mus musculus chromosome 3, clone RP24-380G11, complete sequence
          Length = 198564

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 452  gataaaactttactctctct 471
            ||||||||||||||||||||
Sbjct: 3196 gataaaactttactctctct 3177
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>emb|CR377201.10| Zebrafish DNA sequence from clone CH211-210H21 in linkage group 1,
              complete sequence
          Length = 140461

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 535    agtttcagaacagtacaagt 554
              ||||||||||||||||||||
Sbjct: 105460 agtttcagaacagtacaagt 105441
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>emb|BX005124.7| Zebrafish DNA sequence from clone CH211-284A16 in linkage group 20
            Contains the 5' end of the xrn2 gene for 5'-3'
            exoribonuclease 2, a novel gene and a CpG island,
            complete sequence
          Length = 148325

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 413  cttccagaaaacatacccaa 432
            ||||||||||||||||||||
Sbjct: 8235 cttccagaaaacatacccaa 8254
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>emb|BX324156.6| Zebrafish DNA sequence from clone CH211-215C3 in linkage group 1,
             complete sequence
          Length = 214471

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   agtttcagaacagtacaagt 554
             ||||||||||||||||||||
Sbjct: 96894 agtttcagaacagtacaagt 96875
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>dbj|AK056610.1| Homo sapiens cDNA FLJ32048 fis, clone NTONG2001173
          Length = 2852

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 tgtacagtgggcctgatgtc 364
           ||||||||||||||||||||
Sbjct: 121 tgtacagtgggcctgatgtc 102
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>emb|AL391686.10| Human DNA sequence from clone CTB-BR164I22 on chromosome 10, complete
            sequence
          Length = 59938

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 296  gtgaaagatgtcatggaaag 315
            ||||||||||||||||||||
Sbjct: 9792 gtgaaagatgtcatggaaag 9773
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>emb|BX294126.10| Zebrafish DNA sequence from clone DKEYP-35B8 in linkage group 2,
             complete sequence
          Length = 179476

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 446   tttactgataaaactttact 465
             ||||||||||||||||||||
Sbjct: 59471 tttactgataaaactttact 59490
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>gb|AC155819.2| Mus musculus BAC clone RP23-402F16 from chromosome 12, complete sequence
          Length = 201181

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 152    tttgagccagagtacaatgtgagctttg 179
              ||||||||| || |||||||||||||||
Sbjct: 175831 tttgagccaaagcacaatgtgagctttg 175804
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>gb|AC024260.4|AC024260 Arabidopsis thaliana chromosome 1 BAC F22G10 genomic sequence, complete
             sequence
          Length = 111936

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                 
Query: 239   aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggagg 290
             ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||
Sbjct: 45230 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggagg 45281
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 187     tgatattgaggagaagccgc 206
               ||||||||||||||||||||
Sbjct: 2336847 tgatattgaggagaagccgc 2336828
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>gb|AC018748.3|T3F20 Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1,
            complete sequence
          Length = 99960

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 44/52 (84%)
 Strand = Plus / Plus

                                                                
Query: 239  aagccattcatagttgcttatgaaggcatccagaaccaggaagaatgggagg 290
            ||||| |||||||| ||||| ||||| ||| || | || |||||||||||||
Sbjct: 4136 aagcctttcatagtggcttacgaaggaatcaaggatcaagaagaatgggagg 4187
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>emb|X97305.1|SCSCY1GEN S.cerevisiae SCY1 gene
          Length = 2836

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  aagatgaagatttgggacga 63
           ||||||||||||||||||||
Sbjct: 483 aagatgaagatttgggacga 464
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>emb|Z72605.1|SCYGL083W S.cerevisiae chromosome VII reading frame ORF YGL083w
          Length = 3528

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  aagatgaagatttgggacga 63
           ||||||||||||||||||||
Sbjct: 874 aagatgaagatttgggacga 855
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>emb|AL935192.10| Zebrafish DNA sequence from clone CH211-252B2, complete sequence
          Length = 192649

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    tttactgataaaactttact 465
              ||||||||||||||||||||
Sbjct: 182077 tttactgataaaactttact 182058


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,167,895
Number of Sequences: 3902068
Number of extensions: 5167895
Number of successful extensions: 103251
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103032
Number of HSP's gapped (non-prelim): 217
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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