ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags18n07 |
|---|---|
| Clone Library Name | barley_pub |
>FKBP3_CANAL (Q59VR3) FK506-binding protein 3 (EC 5.2.1.8) (Peptidyl-prolyl| cis-trans isomerase) (PPIase) (Rotamase) Length = 426 Score = 33.1 bits (74), Expect = 0.44 Identities = 17/69 (24%), Positives = 30/69 (43%) Frame = +2 Query: 236 DATPCNVNSDFCAVNPKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVI 415 D P ++ +++P+ A DK PSS + + S YF D E + + Sbjct: 25 DDFPISIRITLASLDPEAADDKAEPSSLRILKKSNSLLSDDYFEDDDDDEEEDDEEDELD 84 Query: 416 PPEEHKQSE 442 EE +++E Sbjct: 85 DEEEEEEAE 93
>VP13B_HUMAN (Q7Z7G8) Vacuolar protein sorting 13B (Cohen syndrome protein 1)| Length = 4022 Score = 31.6 bits (70), Expect = 1.3 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +2 Query: 149 LNAAMGNKGGTTE--SLWVSRLLPKTSMKLMDATPCNVNSDFCAVN 280 L N GGT+ SLW+ +LPK ++KL P N ++ C V+ Sbjct: 1308 LEQTTSNIGGTSGRVSLWMQWVLPKITIKLFAPDPENKGTEVCMVS 1353
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 30.8 bits (68), Expect = 2.2 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 13/88 (14%) Frame = +2 Query: 116 EEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVNPKGAG 295 E NECH+ P GGT + S L +K C +N D CA NP +G Sbjct: 601 ETNINECHSQPCR-----HGGTCQDRDNSYLC--LCLKGTTGPNCEINLDDCASNPCDSG 653 Query: 296 ---DKL----------YPSSQQNINVEK 340 DK+ Y S N+N+++ Sbjct: 654 TCLDKIDGYECACEPGYTGSMCNVNIDE 681
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 30.4 bits (67), Expect = 2.9 Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%) Frame = +2 Query: 89 SNKSCSKTLEEQQNECHASPLNAAMGNK--GGTTESLWVSRLLPKTSMKLMD----ATPC 250 +N C++ L+ Q ASP+ + ++ GGT E P S + +TPC Sbjct: 1088 ANGPCAQDLKVQ-----ASPVKDPVTSRQPGGTAEKELRGNPTPGDSSVPTNCGPASTPC 1142 Query: 251 NVNSDFCAVNPKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNET--TSSKCPVIPPE 424 + N NP+GA + P + SS++ S G E SS+ P + + Sbjct: 1143 HPNIGLPTENPQGAAPECGPHPGTGWD-----GSSEHLCSPGKSREVHPDSSETPTVAEQ 1197 Query: 425 EHKQSETMASILAKR 469 H Q E+++ ++ R Sbjct: 1198 VH-QPESLSQPVSPR 1211
>NEDD1_MOUSE (P33215) Protein NEDD1 (Neural precursor cell expressed| developmentally down-regulated protein 1) Length = 660 Score = 30.4 bits (67), Expect = 2.9 Identities = 42/180 (23%), Positives = 69/180 (38%), Gaps = 14/180 (7%) Frame = +2 Query: 5 GSGGGKWNLRDKSGVFPLRAGRNLKMTNSNKSCSKTLEEQQNECHASPLNAAMGNKG--- 175 G G G L + VFPLR N+ S S L H+SPLN MG+ G Sbjct: 428 GKGDGLDFLPQLNSVFPLRK-------NAGASSSLVL-------HSSPLNVLMGSSGKEE 473 Query: 176 -------GTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVNPKGAGDKLY---PSSQQN 325 ++ ++ + PK +MK F + GA + PSS Q Sbjct: 474 NESHEPSAESKRAYLGKQEPKDAMK-----------QFTKLISSGAEPGILNTCPSSNQA 522 Query: 326 INVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQSETMASILAKRL-DALRHAKTSA 502 N+EK + + + + +P + +AS L++++ D L +++ A Sbjct: 523 RNLEKFEKPEKDIEAQLIHEPSVNGSSTTVPKAASSVTAGVASSLSEKIVDTLGNSRPGA 582
>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.0 bits (66), Expect = 3.7 Identities = 28/113 (24%), Positives = 46/113 (40%) Frame = +2 Query: 101 CSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVN 280 C K L E+ E H+ MGN+ + +SR + ++ +A+ N+N + N Sbjct: 994 CKKNLLEENFEEHSMSPEREMGNENIPSTVSTISRNNIRENV-FKEASSSNINEVGSSTN 1052 Query: 281 PKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQS 439 G+ SS +NI E N + + V+ PE +KQS Sbjct: 1053 EVGSSINEVGSSDENIQAELGRNRGPKLNA--------MLRLGVLQPEVYKQS 1097
>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger| protein 53) Length = 1863 Score = 30.0 bits (66), Expect = 3.7 Identities = 28/113 (24%), Positives = 46/113 (40%) Frame = +2 Query: 101 CSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVN 280 C K L E+ E H+ MGN+ + +SR + ++ +A+ N+N + N Sbjct: 994 CKKNLLEENFEEHSMSPEREMGNENIPSTVSTISRNNIRENV-FKEASSSNINEVGSSTN 1052 Query: 281 PKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQS 439 G+ SS +NI E N + + V+ PE +KQS Sbjct: 1053 EVGSSINEIGSSDENIQAELGRNRGPKLNA--------MLRLGVLQPEVYKQS 1097
>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 30.0 bits (66), Expect = 3.7 Identities = 28/113 (24%), Positives = 46/113 (40%) Frame = +2 Query: 101 CSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVN 280 C K L E+ E H+ MGN+ + +SR + ++ +A+ N+N + N Sbjct: 994 CKKNLLEENFEEHSMSPEREMGNENIPSTVSTISRNNIRENV-FKEASSSNINEVGSSTN 1052 Query: 281 PKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQS 439 G+ SS +NI E N + + V+ PE +KQS Sbjct: 1053 EVGSSINEVGSSDENIQAELGRNRGPKLNA--------MLRLGVLQPEVYKQS 1097
>COLI1_ONCMY (Q04617) Corticotropin-lipotropin A precursor (Pro-opiomelanocortin| A) (POMC A) [Contains: NPP 1; Corticotropin (Adrenocorticotropic hormone) (ACTH); Melanotropin alpha 1 (Alpha-MSH 1); Corticotropin-like intermediary peptide 1 (CLIP-1); Lipo Length = 253 Score = 30.0 bits (66), Expect = 3.7 Identities = 16/53 (30%), Positives = 25/53 (47%) Frame = -2 Query: 162 IAAFKGLAWHSFCCSSRVLEHDLLELVIFKFLPALKGKTPLLSLRFHLPPPDP 4 + KG W + C E++LLE + L K+P+ ++ HL PP P Sbjct: 16 VRGVKGQCWENPRCHDLSSENNLLECIQL-CRSDLTTKSPIFPVKVHLQPPSP 67
>FANCM_MOUSE (Q8BGE5) Fanconi anemia group M protein homolog (EC 3.6.1.-)| (ATP-dependent RNA helicase FANCM) (Protein FACM) Length = 2021 Score = 30.0 bits (66), Expect = 3.7 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Frame = +2 Query: 92 NKSCSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSD-- 265 N SCS E + + SP + + GN ES R+ T + T N SD Sbjct: 999 NASCSPYPEHEHSPRPVSPASHSAGNSQQNLESNSAKRISHPTEKYCLPGTTHNKVSDRP 1058 Query: 266 -FCAVNPKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEE 427 FC + +G K Y +S N + + + F S ++ S+ PV+ +E Sbjct: 1059 SFCESDSEGHNIK-YQNSGSNSCAQIQADLENNFVDKNSHDD---SEPPVLFTDE 1109
>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog| Length = 1863 Score = 29.6 bits (65), Expect = 4.9 Identities = 21/79 (26%), Positives = 36/79 (45%) Frame = +2 Query: 101 CSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVN 280 C K L E+ +E H+ MGN+ + +SR + ++ +A+ N+N + N Sbjct: 994 CKKNLLEENSEEHSMSPEREMGNENIPSTVSIISRNNIRENV-FKEASSSNINEVGSSTN 1052 Query: 281 PKGAGDKLYPSSQQNINVE 337 G+ SS +NI E Sbjct: 1053 EVGSSINEVGSSDENIQAE 1071
>CTI6_YEAST (Q08923) Transcriptional regulatory protein CTI6| (CYC8-TUP1-interacting protein 6) Length = 506 Score = 29.6 bits (65), Expect = 4.9 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Frame = +2 Query: 107 KTLEEQQNECHA----SPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCA 274 K L+E + H S N A +G T +RL +T + L + P +V +D Sbjct: 258 KALKESRRTSHQEDPESYENDADIYQGDTDNHNGTTRL--QTDVMLTEGKPDSVTND--- 312 Query: 275 VNPKGAGDKLYPSSQQNI----NVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQSE 442 + L PS +Q++ +VEKE S + +STGS +T + P++P SE Sbjct: 313 ----DMKESLRPSKEQSMEKTNDVEKEA-SQEKESSTGSAQDTEKTDEPILPLTSISSSE 367
>LIPA_XYLFA (Q9PDW0) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 373 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/35 (34%), Positives = 20/35 (57%) Frame = +2 Query: 383 NETTSSKCPVIPPEEHKQSETMASILAKRLDALRH 487 N T S P + EH++ T+AS A + +++RH Sbjct: 338 NATVSLGSPAVSSTEHRERHTIASKSASKTESIRH 372
>DOA_DROME (P49762) Serine/threonine-protein kinase Doa (EC 2.7.12.1) (Protein| darkener of apricot) Length = 832 Score = 29.3 bits (64), Expect = 6.4 Identities = 23/95 (24%), Positives = 39/95 (41%) Frame = +2 Query: 116 EEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMKLMDATPCNVNSDFCAVNPKGAG 295 ++QQ H NA+ G GG L P T+ +L A+P + +S+ P+ Sbjct: 354 QQQQQHPHTQFQNASAGGGGGGAAGLQYD---PNTNTQLFYASPASSSSNKQPQQPQQQQ 410 Query: 296 DKLYPSSQQNINVEKEFNSSQYFTSTGSDNETTSS 400 + QQ+ +V + Q+ NE + S Sbjct: 411 QQQQSQLQQSNSVIFNHSGQQHQPHQQQQNEMSKS 445
>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein| Length = 1863 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Frame = -2 Query: 174 PLFPIAAFKGLAWHSFCCSSRVLEHDL--LELVIFKFLPA-LKGKTPLLSLRFHLPPPDP 4 P+FP+A S S + + D +L+ LPA L+G T L L +HLP PDP Sbjct: 1580 PIFPMA-------RSISTSGPLDKEDTGRQKLISTGSLPATLQGATDSLGLEWHLPSPDP 1632
>SUHW3_MOUSE (Q6P3Y5) Suppressor of hairy wing homolog 3| Length = 742 Score = 28.9 bits (63), Expect = 8.3 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Frame = +2 Query: 212 PKTSMKLMDATPCNVNSDFCAVNPKGAGDKLYPSSQQNINVEKEFNSSQYFTSTGSDNET 391 PKTS + + PC+ +S A PS + V N+S ++ GS + Sbjct: 195 PKTSASISETRPCSSSSSQTA-----------PSGASSQTVLSNVNTSSVQSAPGSSSLR 243 Query: 392 TSSKCPV----IPPEEHKQSETMASILAKRLDALRHAKTSAI 505 + KC V + P + ++ K L+ L+ + A+ Sbjct: 244 SCPKCNVKFRLLDPLKCHMKRCCPDMINKFLETLKSENSKAV 285
>GCR_PONPY (Q5R9P5) Glucocorticoid receptor (GR)| Length = 777 Score = 28.9 bits (63), Expect = 8.3 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 10/120 (8%) Frame = +2 Query: 50 FPLRAGRNLKMTNSNKSCSKTLEEQQNECHASPLNAAMGNKGGTTESLWVSRLLPKTSMK 229 FP + N + + +K+ S ++ E MGN G + +S +T +K Sbjct: 65 FPKGSVSNAQQPDLSKAVSLSMGLYMGETETK----VMGNDLGFPQQGQISLSSGETDLK 120 Query: 230 LMDATPCNVN-SDFCAVNPKGAG---------DKLYPSSQQNINVEKEFNSSQYFTSTGS 379 L++ + N+N S NPK + +K +P + +I+ E++ Q T+ G+ Sbjct: 121 LLEESIANLNRSTSVPENPKSSASTAVSAAPTEKEFPKTHSDISSEQQHLKGQTGTNGGN 180
>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)| Length = 1020 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -2 Query: 339 FSTLIFC*DDGYSLSPAPFGLTAQKSLFTLHGVASINFIDVFGKS-RLTHKLSVV 178 FST+ + D G SL+PAP + L T H ++ F D G RL +KLS V Sbjct: 415 FSTMEWPIDGGTSLTPAP---PQRDLLLTGHEDGTVRFWDASGVCLRLLYKLSTV 466
>SPTA2_CHICK (P07751) Spectrin alpha chain, brain (Spectrin, non-erythroid alpha| chain) (Fodrin alpha chain) Length = 2477 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +2 Query: 311 SSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQSETMASILAKRLDAL 481 +SQ+ ++E + QYF K P++ ++ + E A L K+ +AL Sbjct: 879 ASQRRQDLEDSLQAQQYFADANEAQSWMREKEPIVGSTDYGKDEDSAEALLKKHEAL 935
>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2| Length = 1019 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -2 Query: 339 FSTLIFC*DDGYSLSPAPFGLTAQKSLFTLHGVASINFIDVFGKS-RLTHKLSVV 178 FST+ + D G SL+PAP + L T H ++ F D G RL +KLS V Sbjct: 415 FSTMEWPIDGGTSLTPAP---PQRDLLLTGHEDGTVRFWDASGVCLRLLYKLSTV 466
>EX5B_CHLPN (Q9Z7G7) Exodeoxyribonuclease V beta chain (EC 3.1.11.5)| Length = 1050 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -2 Query: 270 QKSLFTLHGVASINFIDVFGKSRLTHK 190 Q SLFT+HG + F K+RL HK Sbjct: 115 QMSLFTIHGFCNFVLEQYFPKTRLIHK 141
>VA39_VACCV (P24764) Protein A39| Length = 441 Score = 28.9 bits (63), Expect = 8.3 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 12/71 (16%) Frame = -2 Query: 252 LHGVASINFIDV-------FGKSRLT----HKLSVVPPLFPIAAF-KGLAWHSFCCSSRV 109 LH V SI F+DV + LT + ++P LF + F G+ WH F S + Sbjct: 5 LHAVYSIVFVDVIIIKVQRYINDILTLDIFYLFKMIPLLFILFYFANGIEWHKFETSEEI 64 Query: 108 LEHDLLELVIF 76 + LL+ V++ Sbjct: 65 ISTYLLDDVLY 75
>Y917_AQUAE (O67062) Hypothetical protein aq_917| Length = 408 Score = 28.9 bits (63), Expect = 8.3 Identities = 19/54 (35%), Positives = 24/54 (44%) Frame = -3 Query: 305 TAYHLHPLD*QHKNHYLHCTELHPSISLMFLVKADLPTSFLWFHLYFPLQHSKG 144 T + + P N YLH + I L+F + PT FL LYF SKG Sbjct: 335 TMFEVIPQKKMWNNFYLHIISIFSLIFLIFKLYFLPPTFFLISSLYFLYNISKG 388
>SPTA2_RAT (P16086) Spectrin alpha chain, brain (Spectrin, non-erythroid alpha| chain) (Alpha-II spectrin) (Fodrin alpha chain) Length = 2472 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +2 Query: 311 SSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQSETMASILAKRLDAL 481 +SQ+ ++E + QYF K P++ ++ + E A L K+ +AL Sbjct: 879 ASQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEAL 935
>SPTA2_HUMAN (Q13813) Spectrin alpha chain, brain (Spectrin, non-erythroid alpha| chain) (Alpha-II spectrin) (Fodrin alpha chain) Length = 2472 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/57 (24%), Positives = 26/57 (45%) Frame = +2 Query: 311 SSQQNINVEKEFNSSQYFTSTGSDNETTSSKCPVIPPEEHKQSETMASILAKRLDAL 481 +SQ+ ++E + QYF K P++ ++ + E A L K+ +AL Sbjct: 879 ASQRRQDLEDSLQAQQYFADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEAL 935 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 76,630,358 Number of Sequences: 219361 Number of extensions: 1542759 Number of successful extensions: 4798 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4797 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
