Clone Information

BLAST Search Result

Clone Name	bags19b17
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	HM14A_CHICK (P12902) Nonhistone chromosomal protein HMG-14A	35	0.14
2	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	34	0.18
3	HMGN1_MOUSE (P18608) Nonhistone chromosomal protein HMG-14 (High...	34	0.24
4	MECP2_RAT (Q00566) Methyl-CpG-binding protein 2 (MeCP-2 protein)...	33	0.31
5	MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protei...	33	0.31
6	MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protei...	33	0.31
7	MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protei...	33	0.31
8	MBD4_MOUSE (Q9Z2D7) Methyl-CpG-binding domain protein 4 (EC 3.2....	33	0.40
9	HMGN3_BOVIN (Q3ZBV4) High mobility group nucleosome-binding doma...	33	0.53
10	GLNA_COLGL (Q12613) Glutamine synthetase (EC 6.3.1.2) (Glutamate...	33	0.53
11	HMGN3_CHICK (Q5ZIR5) High mobility group nucleosome-binding doma...	32	0.69
12	MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA...	32	0.69
13	MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-...	32	0.69
14	PSD1_CAEEL (Q18115) 26S proteasome non-ATPase regulatory subunit...	32	0.90
15	HMGN4_HUMAN (O00479) High-mobility group nucleosome-binding doma...	32	1.2
16	HMGN3_RAT (Q66H40) High mobility group nucleosome-binding domain...	32	1.2
17	HMGN3_PONPY (Q5R715) High mobility group nucleosome-binding doma...	32	1.2
18	HMGN3_HUMAN (Q15651) High mobility group nucleosome-binding doma...	32	1.2
19	HMGN2_RAT (P18437) Nonhistone chromosomal protein HMG-17 (High-m...	32	1.2
20	HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High...	32	1.2
21	NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-bi...	32	1.2
22	HMGN2_PONPY (Q5RAA0) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
23	HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-m...	31	1.5
24	HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
25	HMGN2_HUMAN (P05204) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
26	HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
27	HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
28	HMGN2_BOVIN (P02313) Nonhistone chromosomal protein HMG-17 (High...	31	1.5
29	HMGN1_BOVIN (P02316) Nonhistone chromosomal protein HMG-14 (High...	31	1.5
30	DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)	31	1.5
31	DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)	31	1.5
32	PAK2_RABIT (Q29502) Serine/threonine-protein kinase PAK 2 (EC 2....	31	1.5
33	PAK2_MOUSE (Q8CIN4) Serine/threonine-protein kinase PAK 2 (EC 2....	31	1.5
34	PAK2_HUMAN (Q13177) Serine/threonine-protein kinase PAK 2 (EC 2....	31	1.5
35	DRD2_MELGA (O73810) D(2) dopamine receptor (Dopamine D2 receptor)	31	1.5
36	YL57_CAEEL (P34437) Putative zinc finger protein F44E2.7	31	2.0
37	DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III) (...	31	2.0
38	RCOR_DROME (Q59E36) REST corepressor (CoREST)	31	2.0
39	ESCO1_BRARE (Q5SPR8) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Est...	31	2.0
40	DRD2_BOVIN (P20288) D(2) dopamine receptor (Dopamine D2 receptor)	30	2.6
41	H15_HUMAN (P16401) Histone H1.5 (Histone H1a)	30	2.6
42	UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Unco...	30	2.6
43	NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neur...	30	3.4
44	IF16_HUMAN (Q16666) Gamma-interferon-inducible protein Ifi-16 (I...	30	3.4
45	FCRL_RAT (Q3B8P2) Fc receptor-like and mucin-like 1 precursor	30	3.4
46	DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like p...	30	3.4
47	SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)	30	3.4
48	NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3...	30	3.4
49	MBD4_HUMAN (O95243) Methyl-CpG-binding domain protein 4 (EC 3.2....	30	3.4
50	RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology doma...	30	3.4
51	JPH1_HUMAN (Q9HDC5) Junctophilin-1 (Junctophilin type 1) (JP-1)	30	4.4
52	HMGN4_BOVIN (Q2YDK4) High-mobility group nucleosome-binding doma...	29	5.8
53	SPEG_HUMAN (Q15772) Striated muscle preferentially expressed pro...	29	5.8
54	ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11...	29	5.8
55	TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome p...	29	5.8
56	SYQ_CAEEL (O62431) Probable glutaminyl-tRNA synthetase (EC 6.1.1...	29	5.8
57	H13_RABIT (P02251) Histone H1.3	29	5.8
58	RFC1_DROME (P35600) Activator 1 140 kDa subunit (Replication fac...	29	5.8
59	NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 p...	29	5.8
60	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	29	5.8
61	HMGN1_HUMAN (P05114) Nonhistone chromosomal protein HMG-14 (High...	29	7.6
62	PRD14_HUMAN (Q9GZV8) PR domain zinc finger protein 14 (PR domain...	29	7.6
63	EF1G_CAEEL (P54412) Probable elongation factor 1-gamma (EF-1-gam...	29	7.6
64	POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p...	29	7.6
65	GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate...	29	7.6
66	PAK2_RAT (Q64303) Serine/threonine-protein kinase PAK 2 (EC 2.7....	29	7.6
67	UME6_YEAST (P39001) Transcriptional regulator UME6 (Negative tra...	29	7.6
68	CJ006_PONPY (Q5REF4) Protein C10orf6 homolog	29	7.6
69	HMGN3_MOUSE (Q9DCB1) High mobility group nucleosome-binding doma...	28	9.9
70	TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein...	28	9.9
71	RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-ri...	28	9.9

>HM14A_CHICK (P12902) Nonhistone chromosomal protein HMG-14A|
          Length = 104

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSK--ATESPEDEKPA 303
           RRS+RLSAKP    PE PKP + + K +  A +  ED+K A
Sbjct: 17  RRSARLSAKPAPPKPE-PKPKKAAPKKEKAANDKKEDKKAA 56

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>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 130 AHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKP 246
           A PGG A +    AT   P R    +A+P A +P  PKP
Sbjct: 109 AQPGGTATTPAAQATPEAPARPGPAAARPSAPAPGQPKP 147

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>HMGN1_MOUSE (P18608) Nonhistone chromosomal protein HMG-14 (High-mobility group|
           nucleosome-binding domain-containing protein 1)
          Length = 95

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +1

Query: 169 ATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATE 279
           A     RRS+RLSAKP A +  D KP + +GK KA++
Sbjct: 11  AKAEPKRRSARLSAKP-APAKVDAKPKKAAGKDKASD 46

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>MECP2_RAT (Q00566) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 492

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYLKAHPGGPAL--SEF---VWATGNTPRRSSRLSAKP 216
           GK++V  I P G+  +SK  L  Y +   G  +L  ++F   V   G+  RR  +   KP
Sbjct: 118 GKYDVYLINPQGKAFRSKVELIAYFE-KVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKP 176

Query: 217 KAESPEDPKPSRRSGKSKAT 276
           K  SP+ P   R  G+ K +
Sbjct: 177 K--SPKAPGTGRGRGRPKGS 194

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>MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYLKAHPGGPAL--SEF---VWATGNTPRRSSRLSAKP 216
           GK++V  I P G+  +SK  L  Y +   G  +L  ++F   V   G+  RR  +   KP
Sbjct: 118 GKYDVYLINPQGKAFRSKVELIAYFE-KVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKP 176

Query: 217 KAESPEDPKPSRRSGKSKAT 276
           K  SP+ P   R  G+ K +
Sbjct: 177 K--SPKAPGTGRGRGRPKGS 194

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>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYLKAHPGGPAL--SEF---VWATGNTPRRSSRLSAKP 216
           GK++V  I P G+  +SK  L  Y +   G  +L  ++F   V   G+  RR  +   KP
Sbjct: 118 GKYDVYLINPQGKAFRSKVELIAYFE-KVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKP 176

Query: 217 KAESPEDPKPSRRSGKSKAT 276
           K  SP+ P   R  G+ K +
Sbjct: 177 K--SPKAPGTGRGRGRPKGS 194

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>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 484

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYLKAHPGGPAL--SEF---VWATGNTPRRSSRLSAKP 216
           GK++V  I P G+  +SK  L  Y +   G  +L  ++F   V   G+  RR  +   KP
Sbjct: 118 GKYDVYLINPQGKAFRSKVELIAYFE-KVGDTSLDPNDFDFTVTGRGSPSRREQKPPKKP 176

Query: 217 KAESPEDPKPSRRSGKSKAT 276
           K  SP+ P   R  G+ K +
Sbjct: 177 K--SPKAPGTGRGRGRPKGS 194

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>MBD4_MOUSE (Q9Z2D7) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Mismatch-specific DNA
           N-glycosylase)
          Length = 554

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +1

Query: 31  KLNTTRGGKFEVVFITPTGEQVKSKKALTTYL 126
           +L+    GKF+V FI+P G + +SK++L  YL
Sbjct: 84  RLSGKTAGKFDVYFISPQGLKFRSKRSLANYL 115

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>HMGN3_BOVIN (Q3ZBV4) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 100

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGK-------SKATESPEDEK 297
           RRS+RLSAKP    PE PKP + S K       SK  +  ++EK
Sbjct: 25  RRSARLSAKPAPPKPE-PKPRKTSAKKEPAAKVSKGVKGKKEEK 67

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>GLNA_COLGL (Q12613) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 360

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 94  VKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPED 237
           V +   L  YLK    G  ++E++W   +   RS   + K K  +PED
Sbjct: 8   VSNPNTLAKYLKLDQKGSIMAEYIWIDADGETRSKSRTLKEKEYTPED 55

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>HMGN3_CHICK (Q5ZIR5) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 98

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP + + K   T++ +  K
Sbjct: 25  RRSARLSAKPAPPKPE-PKPRKTTKKEPGTKANKGAK 60

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>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
            (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 30/110 (27%), Positives = 39/110 (35%), Gaps = 12/110 (10%)
 Frame = +1

Query: 10   PPPAGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGNT-- 183
            PP A P K             + P G +  S      YL A P  P  S F  A  N   
Sbjct: 1703 PPGADPDK----------EAAMMPAGVEEGSSGDQPPYLDAKPPTPGAS-FSQAESNVDP 1751

Query: 184  ----------PRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKPA 303
                      P + S  + +PKAE P+    +      KA  +PE + PA
Sbjct: 1752 EPDSTQPLSKPAQKSEEANEPKAEKPDATADAEPDANQKAEAAPESQPPA 1801

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>MBD1_MOUSE (Q9Z2E2) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1)
          Length = 636

 Score = 32.3 bits (72), Expect = 0.69
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYLKAHPGGPA----LSEFVWATGNTPRRSSRLSAKPK 219
           G+ ++ + +PTGE+++SK  LT YL     GPA    L +F   T   P   +   A P 
Sbjct: 29  GRSDIYYQSPTGEKIRSKVELTRYL-----GPACDLTLFDFRQGTLCHPIPKTHPLAVPS 83

Query: 220 AESPEDPKPSR 252
            +  +  KP++
Sbjct: 84  KKKKKPSKPAK 94

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>PSD1_CAEEL (Q18115) 26S proteasome non-ATPase regulatory subunit 1 (26S|
            proteasome regulatory subunit rpn-2)
          Length = 965

 Score = 32.0 bits (71), Expect = 0.90
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
 Frame = +1

Query: 4    SWPPPAGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGNT 183
            ++PP A   K    +  K E V ++ TG++  SKK +    K      + S    +    
Sbjct: 791  AYPPRAESKKDKDVK--KIETVVLSITGKKNASKKLIAEEKKRREAAASAS----SAAAA 844

Query: 184  PRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPE-DEKP 300
            P  SS     P AE  ++     + GKSK  ++PE D KP
Sbjct: 845  PSSSSTSGTAPAAE--DEKMEVDQPGKSKKEKAPEKDTKP 882

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>HMGN4_HUMAN (O00479) High-mobility group nucleosome-binding domain-containing|
           protein 4 (Nonhistone chromosomal protein HMG-17-like 3)
           (Non-histone chromosomal protein)
          Length = 89

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE P+P + S K K  + P+  K
Sbjct: 22  RRSARLSAKPAPPKPE-PRPKKASAK-KGEKLPKGRK 56

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>HMGN3_RAT (Q66H40) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 95

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGK-------SKATESPEDEK 297
           RRS+RLSAKP    PE PKP + S K       ++A +  ++EK
Sbjct: 25  RRSARLSAKPVPPKPE-PKPRKTSAKKEPGTKINRAAKGKKEEK 67

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>HMGN3_PONPY (Q5R715) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 99

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSK 270
           RRS+RLSAKP    PE PKP + S K +
Sbjct: 25  RRSARLSAKPAPPKPE-PKPRKTSAKKE 51

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>HMGN3_HUMAN (Q15651) High mobility group nucleosome-binding domain-containing|
           protein 3 (Thyroid receptor interacting protein 7)
           (TRIP7)
          Length = 99

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 16/28 (57%), Positives = 19/28 (67%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSK 270
           RRS+RLSAKP    PE PKP + S K +
Sbjct: 25  RRSARLSAKPAPPKPE-PKPRKTSAKKE 51

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>HMGN2_RAT (P18437) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 21/57 (36%), Positives = 28/57 (49%)
 Frame = +1

Query: 127 KAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           K +  G A  +         RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 2   KRNAEGDAKGDKAKVKDEPQRRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_CHICK (P02314) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP + + K K+ + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAAPK-KSEKVPKGKK 56

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>NSBP1_MOUSE (Q9JL35) Nucleosome-binding protein 1 (Nucleosome-binding protein|
           45) (NBP-45) (GARP45 protein)
          Length = 406

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPE-DPKPSRRSGKSKATESPEDEKPA 303
           RRS+RLSA P   +PE  PK +  S K+K T   E+ K A
Sbjct: 16  RRSARLSAMPVPFTPELKPKRASTSRKTKTTNVVEENKDA 55

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>HMGN2_PONPY (Q5RAA0) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_PIG (P80272) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_MOUSE (P09602) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_HUMAN (P05204) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_GECJA (Q64FT8) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_CANFA (Q711A6) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN2_BOVIN (P02313) Nonhistone chromosomal protein HMG-17 (High-mobility group|
           nucleosome-binding domain-containing protein 2)
          Length = 89

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 18/37 (48%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP    PE PKP +   K K  + P+ +K
Sbjct: 22  RRSARLSAKPAPPKPE-PKPKKAPAK-KGEKVPKGKK 56

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>HMGN1_BOVIN (P02316) Nonhistone chromosomal protein HMG-14 (High-mobility group|
           nucleosome-binding domain-containing protein 1)
          Length = 100

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 16/37 (43%), Positives = 24/37 (64%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP A +  + KP + +GK K+++     K
Sbjct: 18  RRSARLSAKP-APAKVETKPKKAAGKDKSSDKKVQTK 53

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>DRD2_RAT (P61169) D(2) dopamine receptor (Dopamine D2 receptor)|
          Length = 444

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/58 (22%), Positives = 33/58 (56%)
 Frame = +2

Query: 227 ARKTRNPHAEVESLRLLRARKMRSLPNGESHQALTKAKRENRRMQRTQKLKVEIMLML 400
           A+  +N HA++ + R+ +  +++++PNG++  +L    R     Q+ +K    + ++L
Sbjct: 323 AKPEKNGHAKIVNPRIAKFFEIQTMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVL 380

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>DRD2_MOUSE (P61168) D(2) dopamine receptor (Dopamine D2 receptor)|
          Length = 444

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 13/58 (22%), Positives = 33/58 (56%)
 Frame = +2

Query: 227 ARKTRNPHAEVESLRLLRARKMRSLPNGESHQALTKAKRENRRMQRTQKLKVEIMLML 400
           A+  +N HA++ + R+ +  +++++PNG++  +L    R     Q+ +K    + ++L
Sbjct: 323 AKPEKNGHAKIVNPRIAKFFEIQTMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVL 380

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>PAK2_RABIT (Q29502) Serine/threonine-protein kinase PAK 2 (EC 2.7.11.1)|
           (p21-activated kinase 2) (PAK-2) (Gamma-PAK)
           (p21-activated protein kinase I) (PAKI)
          Length = 524

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 151 LSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR-----SGKSKATESPEDEKP 300
           +S  +++TG     S+  S KP    PE+ KP  +     SG  K ++  E E+P
Sbjct: 18  MSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGTEKGSKKKEKERP 72

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>PAK2_MOUSE (Q8CIN4) Serine/threonine-protein kinase PAK 2 (EC 2.7.11.1)|
           (p21-activated kinase 2) (PAK-2)
          Length = 524

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 151 LSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR-----SGKSKATESPEDEKP 300
           +S  +++TG     S+  S KP    PE+ KP  +     SG  K ++  E E+P
Sbjct: 18  MSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSGTEKGSKKKEKERP 72

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>PAK2_HUMAN (Q13177) Serine/threonine-protein kinase PAK 2 (EC 2.7.11.1)|
           (p21-activated kinase 2) (PAK-2) (PAK65) (Gamma-PAK)
           (S6/H4 kinase)
          Length = 524

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
 Frame = +1

Query: 151 LSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR-----SGKSKATESPEDEKP 300
           +S  +++TG     S+  S KP    PE+ KP  +     SG  K ++  E E+P
Sbjct: 18  MSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRHKIISIFSGTEKGSKKKEKERP 72

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>DRD2_MELGA (O73810) D(2) dopamine receptor (Dopamine D2 receptor)|
          Length = 436

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +2

Query: 239 RNPHAEVESLRLLRARKMRSLPNGESHQALTKAKRENRRMQRTQKLKVEIMLML 400
           +N HA+ E+L   +  +++S+PNG++   L KA    +  Q+ +K   +++ ++
Sbjct: 319 KNGHAK-ENLHTAKVFEIQSMPNGKTRSTLLKAMNRRKLSQQKEKKATQMLAIV 371

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>YL57_CAEEL (P34437) Putative zinc finger protein F44E2.7|
          Length = 471

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +2

Query: 281 ARKMRSLPNGESHQALTKAKRENRRMQRTQKLKVEIMLMLKKPKALKWRWKMLKKPK 451
           AR+M +   GES + L K + E R+ +RT+    EI     KP+      K+L++ K
Sbjct: 205 ARRMSTFEVGESSEQLAKPEGEKRKRRRTESRWREIESDSDKPEVTALVKKILEESK 261

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>DNL3_HUMAN (P49916) DNA ligase 3 (EC 6.5.1.1) (DNA ligase III)|
           (Polydeoxyribonucleotide synthase [ATP] 3)
          Length = 922

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 24/74 (32%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
 Frame = +1

Query: 76  TPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKP--KAESPEDPKPS 249
           TP  + V   K  TT     P   A     + T   PR+ S  SAKP    E+P  P P 
Sbjct: 104 TPKKKAVVQAKLTTTGQVTSPVKGAS----FVTSTNPRKFSGFSAKPNNSGEAPSSPTPK 159

Query: 250 RRSGKSKATESPED 291
           R    SK     +D
Sbjct: 160 RSLSSSKCDPRHKD 173

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>RCOR_DROME (Q59E36) REST corepressor (CoREST)|
          Length = 657

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +1

Query: 172 TGNTPRRSSRLSAKPKAESPE---DPKPSRRSGKSKATESPEDEK 297
           +GN        +A P A +PE   D   ++R+GKSKA +S  +EK
Sbjct: 47  SGNANANEKTTTAVPGAGTPESSDDDNSTKRNGKSKAKQSEYEEK 91

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>ESCO1_BRARE (Q5SPR8) N-acetyltransferase ESCO1 (EC 2.3.1.-) (Establishment of|
           cohesion 1 homolog 1) (ECO1 homolog 1)
          Length = 609

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 55  KFEVVFITPTGEQV-KSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESP 231
           K + +++TP   +V K  K+  +     P  P L+    A     + + ++  KP+A +P
Sbjct: 84  KQKPLYLTPLERKVLKEAKSPPSVTNKEPSRPPLT----AANQVVKPAKKVQKKPRASAP 139

Query: 232 EDPKPSRRSGKSKATESPEDEK 297
           +       + K KAT+S  D++
Sbjct: 140 QSNLKGYFTAKPKATKSSSDKQ 161

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>DRD2_BOVIN (P20288) D(2) dopamine receptor (Dopamine D2 receptor)|
          Length = 444

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 13/58 (22%), Positives = 32/58 (55%)
 Frame = +2

Query: 227 ARKTRNPHAEVESLRLLRARKMRSLPNGESHQALTKAKRENRRMQRTQKLKVEIMLML 400
           A+  +N HA+  + ++ +  +++S+PNG++  +L    R     Q+ +K    + ++L
Sbjct: 323 AKPEKNGHAKTVNPKIAKIFEIQSMPNGKTRTSLKTMSRRKLSQQKEKKATQMLAIVL 380

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>H15_HUMAN (P16401) Histone H1.5 (Histone H1a)|
          Length = 225

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 27/101 (26%), Positives = 43/101 (42%)
 Frame = +1

Query: 1   ASWPPPAGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGN 180
           A  P  A P K     G K + V  TP     K+KK     +K     P  ++       
Sbjct: 130 AKKPAGATPKKAKKAAGAK-KAVKKTPK----KAKKPAAAGVKKVAKSPKKAK----AAA 180

Query: 181 TPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKPA 303
            P+++++  AKPKA  P+  KP     K+   ++ + +K A
Sbjct: 181 KPKKATKSPAKPKAVKPKAAKPKAAKPKAAKPKAAKAKKAA 221

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>UNC89_CAEEL (O01761) Muscle M-line assembly protein unc-89 (Uncoordinated protein|
            89)
          Length = 8081

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
 Frame = +1

Query: 76   TPTGEQVKSKKALTTYLKA------HPGGPALSEFVWATGNTPRRSSRLSAKPKAESPED 237
            +PT ++   +K+    LK+       P  P        TG+  +  S    + K +SP  
Sbjct: 1807 SPTKKEKTPEKSAAEELKSPTKKEKSPSSPTKK-----TGDESKEKSPEKPEEKPKSPTP 1861

Query: 238  PKPSRRSGKSKATESPEDEKP 300
             K    S K K ++SPE EKP
Sbjct: 1862 KKSPPGSPKKKKSKSPEAEKP 1882

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>NFM_BOVIN (O77788) Neurofilament triplet M protein (160 kDa neurofilament|
           protein) (Neurofilament medium polypeptide) (NF-M)
          Length = 925

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 172 TGNTPRRSSRLSAKPKAESPEDPKPSRRS--GKSKATESPEDEKP 300
           T  +P   S  +  P+A+SPE   P+ +S   KS A +SP  + P
Sbjct: 651 TAKSPVAKSPTAKSPEAKSPEAKSPTAKSPTAKSPAAKSPAPKSP 695



 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = +1

Query: 88  EQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRS--- 258
           E+V  K+ L    K      A S        +P   S  +  P+A+SPE   P+ +S   
Sbjct: 597 EEVAPKEELAAEAKVEKPEKAKSP----VAKSPTTKSPTAKSPEAKSPEAKSPTAKSPTA 652

Query: 259 ----GKSKATESPEDEKP 300
                KS   +SPE + P
Sbjct: 653 KSPVAKSPTAKSPEAKSP 670

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>IF16_HUMAN (Q16666) Gamma-interferon-inducible protein Ifi-16|
           (Interferon-inducible myeloid differentiation
           transcriptional activator) (IFI 16)
          Length = 785

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 82  TGEQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPK 243
           T E+   K +  +  +  P  PA +    A G +P   + LSA P + S E+PK
Sbjct: 133 TKEKAGPKGSKVSEEQTQPPSPAGAGMSTAMGRSPSPKTSLSAPPNSSSTENPK 186

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>FCRL_RAT (Q3B8P2) Fc receptor-like and mucin-like 1 precursor|
          Length = 347

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 181 TPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKP 300
           +P    R+ A  K  +PE P P++  G      +P DE+P
Sbjct: 260 SPELEIRVQALQKPATPETPPPAKAPGPLPLLPTPSDEQP 299

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>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 133  HPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR---SGKSKATESPEDEKP 300
            HPG PA +    +T   P+R+  + A P   +P  P P+     +  S A  +P  E P
Sbjct: 1957 HPGAPAAA----STATLPQRTLAMPAPPAGTAPPAPGPTPAEPPTAPSAAPPAPSTEPP 2011

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>SWR1_YARLI (Q6CA87) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1772

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +1

Query: 136 PGGPALSEFVWATGNTPRRSSRLSAKPKAESPE-DPK--PSRRSGKSKA--TESPEDEKP 300
           PGG        A   +     R  AKPK ++P+  PK  PSRR+G+ ++   E  E+E+P
Sbjct: 73  PGGRQQRRAAAAAKESLSTPKRAPAKPKEKTPKATPKKTPSRRNGRRRSVKVEEVEEEEP 132

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>NMDE3_MOUSE (Q01098) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1239

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +1

Query: 148  ALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPE 288
            AL    WA G  PR +S  S+  +A +  +P P+R +G + A   P+
Sbjct: 1068 ALLRAAWARGPRPRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQ 1114

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>MBD4_HUMAN (O95243) Methyl-CpG-binding domain protein 4 (EC 3.2.2.-)|
           (Methyl-CpG-binding protein MBD4) (Methyl-CpG-binding
           endonuclease 1) (Mismatch-specific DNA N-glycosylase)
          Length = 580

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 52  GKFEVVFITPTGEQVKSKKALTTYL 126
           G+F+V FI+P G + +SK +L  YL
Sbjct: 104 GRFDVYFISPQGLKFRSKSSLANYL 128

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>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing|
            protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1
            ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral
            sclerosis 2 chromosomal region candidate 9 gene protein)
          Length = 1302

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 181  TPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKPA 303
            TP+R+S + +   AE PE  +PS  S  SK T   E   P+
Sbjct: 1026 TPQRNSSIKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPS 1066

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>JPH1_HUMAN (Q9HDC5) Junctophilin-1 (Junctophilin type 1) (JP-1)|
          Length = 661

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +1

Query: 88  EQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKS 267
           E V +K+     +   P  P  S   +  G TP RS   S K        PKP ++   S
Sbjct: 430 EGVDAKENPEEKVPEKPPTPKESPHFYRKGTTPPRSPEASPKHSHSPASSPKPLKKQNPS 489

Query: 268 KATESPEDEK 297
                 +D++
Sbjct: 490 SGARLNQDKR 499

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>HMGN4_BOVIN (Q2YDK4) High-mobility group nucleosome-binding domain-containing|
           protein 4
          Length = 89

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSR----------RSGKSKATESPEDEKPA 303
           RRS+RLSAKP    PE P+P +          +  K KA  S +   PA
Sbjct: 22  RRSARLSAKPALPKPE-PRPKKAPAKKGEKLAKGRKGKAEVSKDGNNPA 69

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>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3223

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
 Frame = +1

Query: 19   AGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSS 198
            A P   +   G   E+        +++   +L+   +A P  PA         + P+ S+
Sbjct: 2136 AEPRGRHRRAGAPLEIPVARLGARRLQESPSLSALSEAQPSSPARP-------SAPKPST 2188

Query: 199  RLSAKPKAESPED------PKPSRRSGKSKATESPEDEKPA 303
              SA+P A +P D      P+P++        E     KPA
Sbjct: 2189 PKSAEPSATTPSDAPQPPAPQPAQDKAPEPRPEPVRASKPA 2229

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>ANR11_HUMAN (Q6UB99) Ankyrin repeat domain-containing protein 11 (Ankyrin|
            repeat-containing cofactor 1)
          Length = 2664

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
 Frame = +1

Query: 16   PAGPXKLNTTRGGKFEVVFITPTGEQVK-SKKALTTYLKAHPGGPALSEFVWATGNTPRR 192
            P  P  L     G F  V      E    S++AL + L    GG + +   W  G+    
Sbjct: 1926 PPEPSYLEPLDEGPFSAVITEEPVEWAHPSEQALASSLI---GGTSENPVSWPVGSDLLL 1982

Query: 193  SS--RLSAKPKAESPEDPKPSRRSGKSKATESPEDEKPA 303
             S  R    PK   P DP  S   G   A+E+P    PA
Sbjct: 1983 KSPQRFPESPKRFCPADPLHSAAPGPFSASEAPYPAPPA 2021

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>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
 Frame = +1

Query: 16  PAGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPG--GPALSEFVWATGNTPR 189
           PA    L     GK   V       +   +K       A PG  GPA+++          
Sbjct: 277 PAAKALLQAKASGKTSQVGAASAPAKESPRKGAAP---APPGKTGPAVAKAQAGKREEDS 333

Query: 190 RSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKP 300
           +SS   +  + E+P   KPS ++ + +A  +P  E P
Sbjct: 334 QSSSEESDSEEEAPAQAKPSGKAPQVRAASAPAKESP 370

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>SYQ_CAEEL (O62431) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 786

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 184 PRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKPA 303
           P+ +  L+ K K + PE PKPS+ +  +      +++K A
Sbjct: 176 PKTAEDLAPKKKEKKPEGPKPSKDAAAAATAPGTKNQKEA 215

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>H13_RABIT (P02251) Histone H1.3|
          Length = 213

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 25/90 (27%), Positives = 34/90 (37%)
 Frame = +1

Query: 10  PPPAGPXKLNTTRGGKFEVVFITPTGEQVKSKKALTTYLKAHPGGPALSEFVWATGNTPR 189
           P  A P K     G K  V     T ++    KA      A P  PA          +P+
Sbjct: 132 PAGATPKKPKKAAGAKKAV---KKTPKKAPKPKAAAKPKVAKPKSPA------KVAKSPK 182

Query: 190 RSSRLSAKPKAESPEDPKPSRRSGKSKATE 279
           ++   + KPKA  P+ PKP     K  A +
Sbjct: 183 KAK--AVKPKAAKPKAPKPKAAKAKKTAAK 210

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>RFC1_DROME (P35600) Activator 1 140 kDa subunit (Replication factor C large|
           subunit) (Germline transcription factor 1)
          Length = 986

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 190 RSSRLSAKPKAESPEDPKPSRRSGKSKA-TESPEDEKPA 303
           RSS    + K  SPE PKP  +S KSKA T   + EKPA
Sbjct: 152 RSSPSPKRAKNSSPEPPKP--KSTKSKATTPRVKKEKPA 188

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>NMDE3_RAT (Q00961) Glutamate [NMDA] receptor subunit epsilon 3 precursor|
            (N-methyl D-aspartate receptor subtype 2C) (NR2C)
            (NMDAR2C)
          Length = 1237

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 148  ALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPE 288
            A+    WA G  PR +S  S+  +A +  +P P+R +G + A   P+
Sbjct: 1067 AMLRAAWARGPRPRHASLPSSVAEAFTRSNPLPARCTGHACACPCPQ 1113

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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +1

Query: 124 LKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESPED 291
           LK  P  P   E  W      +RSS   A+ ++   E P P+   GK  A + PE+
Sbjct: 471 LKVMPAPPP-KENAWV-----KRSSNPPARSQSSDTEQPSPTSGGGKVAAVQPPEE 520

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>HMGN1_HUMAN (P05114) Nonhistone chromosomal protein HMG-14 (High-mobility group|
           nucleosome-binding domain-containing protein 1)
          Length = 99

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKATESPEDEK 297
           RRS+RLSAKP A+   + KP + + K K+++     K
Sbjct: 18  RRSARLSAKPPAK--VEAKPKKAAAKDKSSDKKVQTK 52

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>PRD14_HUMAN (Q9GZV8) PR domain zinc finger protein 14 (PR domain-containing|
           protein 14)
          Length = 571

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKA 273
           R S  L   P  +S + PKPS + GKS A
Sbjct: 165 RTSQLLPCSPSKQSEDGPKPSNQEGKSPA 193

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>EF1G_CAEEL (P54412) Probable elongation factor 1-gamma (EF-1-gamma) (eEF-1B|
           gamma)
          Length = 398

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 196 SRLSAKPKAESPEDPKPSRRSGKSKATESPEDEKP 300
           + LSAK    +P+  KP + +  + A   PED++P
Sbjct: 200 TELSAKVAKSAPKAEKPKKEAKPAAAAAQPEDDEP 234

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>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
 Frame = +1

Query: 7    WPPPAGPXKLNTTRGGKFEVVFIT------PTGEQVKSKKAL-----TTYLKAHPGGPAL 153
            WP P G   L     G  ++  +T      P   +  S+ +L      +YLK   GGP L
Sbjct: 1110 WPKPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLL 1169

Query: 154  SEFVWATG 177
              F  A G
Sbjct: 1170 CPFGHAVG 1177

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>GLNA_GIBFU (Q9C2U9) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia|
           ligase) (GS)
          Length = 353

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/62 (29%), Positives = 26/62 (41%)
 Frame = +1

Query: 106 KALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRRSGKSKATESP 285
           + L  YLK    G  ++E+VW   +   RS   +   K   PED  P      S   ++P
Sbjct: 10  ETLQKYLKLDQKGMIMAEYVWVDADGGTRSKSRTLPEKEYKPED-LPVWNFDGSSTNQAP 68

Query: 286 ED 291
            D
Sbjct: 69  GD 70

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>PAK2_RAT (Q64303) Serine/threonine-protein kinase PAK 2 (EC 2.7.11.1)|
           (p21-activated kinase 2) (PAK-2) (Gamma-PAK) (p62-PAK)
          Length = 524

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 151 LSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR-----SGKSKATESPEDEKP 300
           +S  +++TG     S+  S KP    PE+ KP  +     S   K ++  E E+P
Sbjct: 18  MSSTIFSTGGKDPLSANHSLKPLPSVPEEKKPRNKIISIFSSTEKGSKKKEKERP 72

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>UME6_YEAST (P39001) Transcriptional regulator UME6 (Negative transcriptional|
           regulator of IME2)
          Length = 836

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = +1

Query: 85  GEQVKSKKALTTYLKAHPGGPALSEFVWATGNTPRRSSRLSAKPKAES----PEDPKPSR 252
           GE   S    +  LKA  G    +++  AT     +S   + KPKA+S        +P+ 
Sbjct: 682 GESSTSSAPSSPSLKASSGLAYTADYPNATSPDFAKSKGKNVKPKAKSKAKQSSKKRPNN 741

Query: 253 RSGKSKATESPE 288
            + KSKA  S E
Sbjct: 742 TTSKSKANNSQE 753

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>CJ006_PONPY (Q5REF4) Protein C10orf6 homolog|
          Length = 1174

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 139 GGPALSEFVWATGNTPRRSSRLSAKPKAESPEDPKPSRR--SGKSKATES 282
           GGP  SE+   T + P     +   P   +P D  PS R  SG S A  S
Sbjct: 543 GGPLCSEYGAPTKSPPAALEVVPCVPSPAAPSDKAPSERESSGNSNAGSS 592

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>HMGN3_MOUSE (Q9DCB1) High mobility group nucleosome-binding domain-containing|
           protein 3
          Length = 99

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSK 270
           RRS+RLSAKP    PE  KP + S K +
Sbjct: 25  RRSARLSAKPVPPKPES-KPRKTSAKKE 51

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>TR150_HUMAN (Q9Y2W1) Thyroid hormone receptor-associated protein 3 (Thyroid|
           hormone receptor-associated protein complex 150 kDa
           component) (Trap150)
          Length = 955

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 193 SSRLSAKPKAESPEDPKPSRRSGKSKATESPE 288
           S R SAK K  S +D +PS+ +G ++  E+ E
Sbjct: 172 SKRKSAKEKKSSSKDSRPSQAAGDNQGDEAKE 203

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>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +1

Query: 187 RRSSRLSAKPKAESPEDPKPSRRSGKSKA 273
           R  SR S++ K+ S   PK SRR  KSK+
Sbjct: 225 RSRSRSSSRSKSRSRSPPKRSRRESKSKS 253


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.303    0.123    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,770,542
Number of Sequences: 219361
Number of extensions: 1331309
Number of successful extensions: 3302
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 3094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3287
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result