ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags19b13 |
|---|---|
| Clone Library Name | barley_pub |
>NFE2_HUMAN (Q16621) Transcription factor NF-E2 45 kDa subunit (Nuclear factor,| erythroid-derived 2 45 kDa subunit) (p45 NF-E2) (Leucine zipper protein NF-E2) Length = 373 Score = 31.6 bits (70), Expect = 1.4 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = -3 Query: 344 PCPHFPQPPYHRQLVHSLWHYCPVTCSPTG----VQPPTSLPSSAPTGSHPPLALGHLQL 177 P P+ PP YCP + P PP LP+S PP + G++ + Sbjct: 53 PAPYLGPPPPTT--------YCPCSIHPDSGFPLPPPPYELPASTSHVPDPPYSYGNMAI 104 Query: 176 SVSWNLPAAGVL 141 VS L +G+L Sbjct: 105 PVSKPLSLSGLL 116
>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)| (U1A protein) (U1-A) Length = 286 Score = 30.8 bits (68), Expect = 2.4 Identities = 15/57 (26%), Positives = 24/57 (42%) Frame = -3 Query: 362 LLDCLHPCPHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPTGSHPPLAL 192 ++ + P P P P +++H + P P + PP P P G+ PP L Sbjct: 138 VVGAVQPVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQL 194
>ESXB_MYCTU (P0A566) ESAT-6-like protein esxB (10 kDa culture filtrate antigen| cfp10) (Secreted antigenic protein MTSA-10) Length = 99 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/67 (32%), Positives = 37/67 (55%) Frame = +2 Query: 23 AREIEERWCGSIGSAEDMQAKVLKKQEAXAKRERAMAYALTHQRQAGSRKLKAADVPGPE 202 A ++ +W G+ G+A QA V++ QEA K+++ + T+ RQAG + AD + Sbjct: 35 AGSLQGQWRGAAGTAA--QAAVVRFQEAANKQKQELDEISTNIRQAGV-QYSRADEEQQQ 91 Query: 203 ADENQWG 223 A +Q G Sbjct: 92 ALSSQMG 98
>ESXB_MYCBO (P0A567) ESAT-6-like protein esxB (10 kDa culture filtrate antigen| cfp10) (Secreted antigenic protein MTSA-10) Length = 99 Score = 30.4 bits (67), Expect = 3.1 Identities = 22/67 (32%), Positives = 37/67 (55%) Frame = +2 Query: 23 AREIEERWCGSIGSAEDMQAKVLKKQEAXAKRERAMAYALTHQRQAGSRKLKAADVPGPE 202 A ++ +W G+ G+A QA V++ QEA K+++ + T+ RQAG + AD + Sbjct: 35 AGSLQGQWRGAAGTAA--QAAVVRFQEAANKQKQELDEISTNIRQAGV-QYSRADEEQQQ 91 Query: 203 ADENQWG 223 A +Q G Sbjct: 92 ALSSQMG 98
>ACRO_RAT (P29293) Acrosin precursor (EC 3.4.21.10) [Contains: Acrosin light| chain; Acrosin heavy chain] Length = 437 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%) Frame = -3 Query: 368 LFLLDCLHPCPHFPQPP---YHRQLVHSLWHYCPVTCSPTGVQPPTSL---PSSAPTGSH 207 L L+ P P Q P +H +H W++ ++ P ++PP L PSS T S Sbjct: 295 LHLIQPATPHPPTTQQPVISFHPPSIHPPWYFQHLSPRPPHLRPPRPLLHQPSSVHTSSA 354 Query: 206 PPLAL 192 P + L Sbjct: 355 PVIPL 359
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -3 Query: 344 PCPHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPT 216 P P FP PP LV + P SP PP P+++PT Sbjct: 964 PSPDFPPPPPESSLV-----FPPPPPSPVPAPPPPPPPTASPT 1001
>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (FAP-A) Length = 381 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -3 Query: 344 PCPHFPQ-PPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPTGSHPP 201 P P+ Q PP R+++ P P PP P +AP G+ PP Sbjct: 77 PAPNGQQRPPRRRRMI-------PTRAPPPAGAPPNGAPPAAPNGAPPP 118
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 30.0 bits (66), Expect = 4.0 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +2 Query: 209 ENQWGRNWVERWVAVRPWENRLLDSNAKESVPIGDDKEAEENGDRDVNNP 358 +N WGRN+V +A+ P ENR + A E + E+ +G +++++P Sbjct: 151 KNGWGRNYVGENLAIDP-ENRCILVAAMEKNKLFYKIESNSSGSKELSSP 199
>ENAH_HUMAN (Q8N8S7) Protein enabled homolog| Length = 591 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/62 (35%), Positives = 25/62 (40%) Frame = -3 Query: 386 ECPKLQLFLLDCLHPCPHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 E P Q +L L P P P PP Q +L P G PP LPS+ P Sbjct: 299 ETPSQQGIVLGPLAPPPPPPLPPGPAQASVAL-------PPPPGPPPPPPLPSTGPPPPP 351 Query: 206 PP 201 PP Sbjct: 352 PP 353
>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)| Length = 1355 Score = 29.6 bits (65), Expect = 5.3 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Frame = -3 Query: 449 HLHQNVTSCVLHLSSGLNHLTECPKLQLFLLDCLHPC---PHFPQPPYHR-----QLVHS 294 H N TS SSG N T +LQ+ + D P P PP + ++ Sbjct: 1241 HSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKSPTPPPSKLHALVAAANA 1300 Query: 293 LWHY----CPVTCSPTGVQPPTSLPSSAPTGSHPPLALG 189 + Y VT + + PP++ S AP+ S PP ++G Sbjct: 1301 VQRYPTLSADVTVTASNGGPPSAAASPAPSSS-PPASVG 1338
>TRME_CHLMU (Q9PLM9) Probable tRNA modification GTPase trmE| Length = 444 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = -3 Query: 368 LFLLDCLHPCPHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPTG 213 L+++D P P FP Y + + LW+ C V P P + SA TG Sbjct: 300 LWVMDASQPVPEFPAILYQKPTI-LLWNKCDVASPPQLEVPFQQIFVSAKTG 350
>SRBS1_HUMAN (Q9BX66) Sorbin and SH3 domain-containing protein 1 (Ponsin)| (c-Cbl-associated protein) (CAP) (SH3 domain protein 5) (SH3P12) Length = 1292 Score = 29.6 bits (65), Expect = 5.3 Identities = 12/40 (30%), Positives = 19/40 (47%) Frame = -3 Query: 338 PHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAP 219 PH + P+H Q + + P++ +P PP L AP Sbjct: 213 PHLQRWPHHSQPARASGSFAPISQTPPSFSPPPPLVPPAP 252
>E75BC_DROME (P17671) Ecdysone-induced protein 75B isoforms C/D (E75-A)| Length = 1199 Score = 29.6 bits (65), Expect = 5.3 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Frame = -3 Query: 449 HLHQNVTSCVLHLSSGLNHLTECPKLQLFLLDCLHPC---PHFPQPPYHR-----QLVHS 294 H N TS SSG N T +LQ+ + D P P PP + ++ Sbjct: 1085 HSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKSPTPPPSKLHALVAAANA 1144 Query: 293 LWHY----CPVTCSPTGVQPPTSLPSSAPTGSHPPLALG 189 + Y VT + + PP++ S AP+ S PP ++G Sbjct: 1145 VQRYPTLSADVTVTASNGGPPSAAASPAPSSS-PPASVG 1182
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 29.6 bits (65), Expect = 5.3 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 9/58 (15%) Frame = -3 Query: 347 HPCPHFP---QPPYH--RQLVHSLWHYCPVTCSPTG----VQPPTSLPSSAPTGSHPP 201 HP P FP QPP RQ S + VT PTG ++PPTS AP G+ PP Sbjct: 159 HPPPLFPPSPQPPDSTPRQPEASFEPHPSVT--PTGYHAPMEPPTSRMFQAPPGAPPP 214
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 29.6 bits (65), Expect = 5.3 Identities = 25/58 (43%), Positives = 29/58 (50%), Gaps = 9/58 (15%) Frame = -3 Query: 347 HPCPHFP---QPPYH--RQLVHSLWHYCPVTCSPTG----VQPPTSLPSSAPTGSHPP 201 HP P FP QPP RQ S + VT PTG ++PPTS AP G+ PP Sbjct: 160 HPPPLFPPSPQPPDSTPRQPEASFEPHPSVT--PTGYHAPMEPPTSRMFQAPPGAPPP 215
>SRPK2_MOUSE (O54781) Serine/threonine-protein kinase SRPK2 (EC 2.7.11.1)| (Serine/arginine-rich protein-specific kinase 2) (SR-protein-specific kinase 2) (SFRS protein kinase 2) Length = 681 Score = 29.6 bits (65), Expect = 5.3 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 4/107 (3%) Frame = +2 Query: 65 AEDMQAKVLKKQEAXAKRERAMAYALTHQRQAGSRKLKAADVPGPEADENQWGRNWVERW 244 +++ + K+ KKQ+ A+ + + RK+ ++ EA Q G E Sbjct: 263 SKNKKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENITSAEASGEQDGEYQPEVT 322 Query: 245 VAVRPWENRLLDSNAKESVPIGDDKEAE----ENGDRDVNNPKGKVA 373 + E+ + AK++ + D +E E EN ++D ++ + ++A Sbjct: 323 LKAADLEDTTEEETAKDNGEVEDQEEKEDAEKENAEKDEDDVEQELA 369
>E75BB_DROME (P13055) Ecdysone-induced protein 75B isoform B (E75-C)| Length = 1412 Score = 29.6 bits (65), Expect = 5.3 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%) Frame = -3 Query: 449 HLHQNVTSCVLHLSSGLNHLTECPKLQLFLLDCLHPC---PHFPQPPYHR-----QLVHS 294 H N TS SSG N T +LQ+ + D P P PP + ++ Sbjct: 1298 HSTSNGTSAPASSSSGSNSATPLLELQVDIADSAQPLNLSKKSPTPPPSKLHALVAAANA 1357 Query: 293 LWHY----CPVTCSPTGVQPPTSLPSSAPTGSHPPLALG 189 + Y VT + + PP++ S AP+ S PP ++G Sbjct: 1358 VQRYPTLSADVTVTASNGGPPSAAASPAPSSS-PPASVG 1395
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%) Frame = -3 Query: 359 LDCLHPCPHFP-QPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLPSSAPTGSHP 204 L HP PH +P H + H+C +CS G +S PS P HP Sbjct: 8 LPTTHPHPHSSSRPQSHTNNQCACSHHCR-SCSQAGHPSSSSSPSPGPPTKHP 59
>RRPL_DUGBV (Q66431) RNA-directed RNA polymerase (EC 2.7.7.48) (L protein)| Length = 4036 Score = 29.3 bits (64), Expect = 6.9 Identities = 13/33 (39%), Positives = 21/33 (63%) Frame = +2 Query: 113 KRERAMAYALTHQRQAGSRKLKAADVPGPEADE 211 KRE +M L H RQA + +LK+A + +A++ Sbjct: 758 KREESMQKKLEHDRQAEANRLKSAGLSASKAEQ 790
>ARP4_STRPY (P13050) IgA receptor precursor| Length = 386 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/68 (30%), Positives = 36/68 (52%) Frame = +2 Query: 125 AMAYALTHQRQAGSRKLKAADVPGPEADENQWGRNWVERWVAVRPWENRLLDSNAKESVP 304 A+A A+ A ++KAA++ P+AD + W NW + + A+ EN L ++ + Sbjct: 23 AVAVAVLGAGFANQTEVKAAEIKKPQAD-SAW--NWPKEYNALLK-ENEELKVEREKYLS 78 Query: 305 IGDDKEAE 328 DDKE + Sbjct: 79 YADDKEKD 86
>RL19_HALMA (P14119) 50S ribosomal protein L19e (Hmal19) (Hl24)| Length = 148 Score = 29.3 bits (64), Expect = 6.9 Identities = 28/91 (30%), Positives = 33/91 (36%) Frame = +2 Query: 74 MQAKVLKKQEAXAKRERAMAYALTHQRQAGSRKLKAADVPGPEADENQWGRNWVERWVAV 253 +QAK K RER A HQ+ AGSRK KA + D W R A Sbjct: 49 IQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKED-------WESRIRAQ 101 Query: 254 RPWENRLLDSNAKESVPIGDDKEAEENGDRD 346 R L D S D + G+ D Sbjct: 102 RTKLRELRDEGTLSSSQYRDLYDKAGGGEFD 132
>VGLB_EHV1V (Q6S6T9) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 293 LWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 L+ C V PT PPTS P+S T SH Sbjct: 77 LFGSCVVRAVPTTPSPPTSTPTSMSTHSH 105
>VGLB_EHV1D (P25218) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 293 LWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 L+ C V PT PPTS P+S T SH Sbjct: 77 LFGSCVVRAVPTTPSPPTSTPTSMSTHSH 105
>VGLB_EHV1B (Q6DLH8) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 293 LWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 L+ C V PT PPTS P+S T SH Sbjct: 77 LFGSCVVRAVPTTPSPPTSTPTSMSTHSH 105
>VGLB_EHV1A (P18551) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 293 LWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 L+ C V PT PPTS P+S T SH Sbjct: 77 LFGSCVVRAVPTTPSPPTSTPTSMSTHSH 105
>VGLB_EHV1 (P18050) Glycoprotein B precursor (Glycoprotein 14)| Length = 980 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 293 LWHYCPVTCSPTGVQPPTSLPSSAPTGSH 207 L+ C V PT PPTS P+S T SH Sbjct: 77 LFGSCVVRAVPTTPSPPTSTPTSMSTHSH 105
>ZN575_HUMAN (Q86XF7) Zinc finger protein 575| Length = 245 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 347 HPCPHFPQPPYHR-QLVHSLWHYCPVTCSP 261 HPCPH P+ HR +L LW + P P Sbjct: 119 HPCPHCPKSFGHRSKLAAHLWTHAPTRPYP 148
>TSC2_RAT (P49816) Tuberin (Tuberous sclerosis 2 homolog protein)| Length = 1809 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 254 VQPPTSLPSSAPTGSHPPLALGHLQLSV 171 + PPT PS PTG P + LGHL S+ Sbjct: 663 LSPPTGPPSPVPTG--PAVRLGHLPYSL 688
>CSF1_ASHGO (Q74ZX0) Protein CSF1| Length = 2887 Score = 28.9 bits (63), Expect = 9.0 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 37 GTLVWQYWLSGRY 75 GT+ W+YWL GRY Sbjct: 66 GTITWRYWLIGRY 78
>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 protein) Length = 549 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 278 PVTCSPTGVQPPTSLPSSAPTGSHPPLAL 192 P +PT PT+ P+ APT PP+A+ Sbjct: 407 PTPAAPTSPLTPTTPPAVAPTTQTPPVAM 435
>GSHB_SCHPO (P35669) Glutathione synthetase large chain (EC 6.3.2.3)| (Glutathione synthase large chain) (GSH synthetase large chain) (GSH-S) (Phytochelatin synthetase) Length = 498 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Frame = +2 Query: 119 ERAMAYALTHQRQAGSRKLKAADVPG--PEADENQWGRNWVERWVAVRPWENRLLDSNAK 292 E+ + L QR+ G D+PG + + +W + R++ P +N +L Sbjct: 379 EKPEDFVLKPQREGGGNNTYGKDIPGLLSKMPQEEWDSYILMRYINAVPSQNYILKGERP 438 Query: 293 ESVPIGDD 316 E + D+ Sbjct: 439 EKFDVVDE 446
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -3 Query: 347 HPCPHFPQPPYHR-QLVHSLWHYCPVTCSP 261 HPCPH P+ HR +L LW + P P Sbjct: 134 HPCPHCPKAFGHRSKLAAHLWTHAPTRPYP 163
>YG5W_YEAST (P53335) Hypothetical 31.3 kDa protein in TAF145-YOR1 intergenic| region Length = 271 Score = 28.9 bits (63), Expect = 9.0 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Frame = +2 Query: 209 ENQWGRNWVERWVAVRPWENRLLD----SNAKESVPIGDDKEAEENGDRD 346 + +WG ++V+ V W+ + SNAK+ GDD E E++ D++ Sbjct: 119 DGKWGIHFVKGEVLASTWDPKTHKLRNYSNAKKRKREGDDSEDEDDDDKE 168
>NO12A_MEDSA (Q40361) Early nodulin 12A precursor (N-12A) (Early nodulin NMS-8)| Length = 93 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 2/48 (4%) Frame = -3 Query: 338 PHFPQPPYHRQLVHSLWHYCPVTCSPTGVQPPTSLP--SSAPTGSHPP 201 P +PP+ VH H P P +PP P PT HPP Sbjct: 39 PPVHKPPHKEPPVHKPPHKDPPVNKPPQKEPPVHKPPRKEPPTHRHPP 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,645,696 Number of Sequences: 219361 Number of extensions: 1559166 Number of successful extensions: 6248 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 5553 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6205 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
