ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bags18m03 |
|---|---|
| Clone Library Name | barley_pub |
>EMB30_ARATH (Q42510) Pattern formation protein EMB30| Length = 1451 Score = 160 bits (404), Expect = 4e-39 Identities = 95/199 (47%), Positives = 123/199 (61%), Gaps = 2/199 (1%) Frame = +1 Query: 19 KVCTDQREEVRDHALVLLHRCIV-VDGMSVPSSAWLMSFD-IVFQLLDELLEIAQNFSPK 192 KVC DQRE+VR+HAL L +C+ VDG+++ S W FD ++F +LD+LLEIA S K Sbjct: 1254 KVCLDQREDVRNHALQSLQKCLGGVDGINLAHSMWSQCFDKVIFTVLDDLLEIAAG-SQK 1312 Query: 193 HFRNMEASLLHAVKXXXXXXXXXXXXXXAHSGFSKLWVEVLDMAEKLMKAKVRGGSRTER 372 +RNME +LL A+K S F KLW+ VL EK MK KVRG ++++ Sbjct: 1313 DYRNMEGTLLLAIKLLSKVFLQQLQELSQLSTFCKLWLGVLTRMEKYMKVKVRG-KKSDK 1371 Query: 373 LQETATELLKNMLLVMKASGVLSRTSAGGESSLWEATWLHVNKMAPSLQSVVFPDYDDAV 552 LQE+ ELLKN+LLVMK GVL + SA G SLWE TWLHVN +APS++ +FPD + + Sbjct: 1372 LQESVPELLKNILLVMKTKGVLLQRSALGGDSLWELTWLHVNNIAPSMRLELFPDQESSQ 1431 Query: 553 QGAQSKLDIPAVSEGRLVP 609 G D VS G P Sbjct: 1432 LG-----DDETVSNGLSSP 1445
>GBF1_HUMAN (Q92538) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1859 Score = 80.9 bits (198), Expect = 3e-15 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 4/176 (2%) Frame = +1 Query: 16 AKVCTDQREEVRDHALVLLHRCIVV-DGMSVPSSAWLMSFD-IVFQLLDELLEIAQNFSP 189 A +C D R +VR AL L R ++V D + + W F+ ++F LL +LLE N SP Sbjct: 1550 ACLCCDARRQVRMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLE---NISP 1606 Query: 190 KHFRNMEASLLHAVKXXXXXXXXXXXXXXAHSGFSKLWVEVLDMAEKLMKAKVRGGSRTE 369 ME + + A + S F+ LW+ +LD +K M A ++ Sbjct: 1607 ADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHA-----GSSD 1661 Query: 370 RLQETATELLKNMLLVMKASGVLSRTSA--GGESSLWEATWLHVNKMAPSLQSVVF 531 L E E LKNMLLVM + + A GG S+LWE TW ++ P L+ +F Sbjct: 1662 LLSEAIPESLKNMLLVMDTAEIFHSADARGGGPSALWEITWERIDCFLPHLRDELF 1717
>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide| exchange factor 1 (BFA-resistant GEF 1) Length = 1856 Score = 78.6 bits (192), Expect = 2e-14 Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 4/176 (2%) Frame = +1 Query: 16 AKVCTDQREEVRDHALVLLHRCIVV-DGMSVPSSAWLMSFD-IVFQLLDELLEIAQNFSP 189 A +C D R +VR AL L R ++V D + + W F+ ++F LL +LLE N SP Sbjct: 1550 ACLCCDARRQVRMQALTYLQRALLVHDLQKLDALEWESCFNKVLFPLLTKLLE---NISP 1606 Query: 190 KHFRNMEASLLHAVKXXXXXXXXXXXXXXAHSGFSKLWVEVLDMAEKLMKAKVRGGSRTE 369 ME + + A + S F+ LW+ +LD +K M A ++ Sbjct: 1607 ADVGGMEETRMRASTLLSKVFLQHLSPLLSLSTFAALWLTILDFMDKYMHA-----GSSD 1661 Query: 370 RLQETATELLKNMLLVMKASGVLSRTSA--GGESSLWEATWLHVNKMAPSLQSVVF 531 L E E LKNMLLVM + + A G S+LWE TW ++ P L+ +F Sbjct: 1662 LLSEAIPESLKNMLLVMDTAEIFHSADARGGSPSALWEITWERIDCFLPHLRDELF 1717
>SNAT_CHICK (P79774) Serotonin N-acetyltransferase (EC 2.3.1.87) (Aralkylamine| N-acetyltransferase) (AA-NAT) (Serotonin acetylase) Length = 205 Score = 32.7 bits (73), Expect = 0.98 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = +3 Query: 138 CLPVARRIVRDCAEFLAKAFQKHGSFPLACCKAVIQTI 251 CLP ARR V C +FL ++K G + C+ + T+ Sbjct: 147 CLPCARRAVLMCEDFLVPFYEKCGFVAVGPCQVTVGTL 184
>ILVD_THET2 (Q72JA8) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 555 Score = 32.0 bits (71), Expect = 1.7 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Frame = +3 Query: 147 VARRIVRDCAEFLAKAFQKHGSFPLACC-KAVIQTILAVTQRSF-GAQRFQ*AVGGGTGH 320 V+R ++ D E +A+ + G L+ C K + T + V + G + + G Sbjct: 92 VSREVIADSVELIAQGYLYDGMVGLSACDKTIPGTAMGVIRSGVPGMVLYGGTIAPGEWQ 151 Query: 321 GREAHESQSKRGQQD*EVARDCHRATQEHAAGDESERGLIEDERRR-------GEQFVGS 479 GR+ + A + AAG SE L+E ERR G Q+ + Sbjct: 152 GRKL-------------TIVEVFEAVGQRAAGKISEEELLEIERRAIPGPGACGGQYTAN 198 Query: 480 NMASR*QDGAFASVG--SFP*L**CSTRCTKQAG 575 MA + + VG + P + R TK+AG Sbjct: 199 TMAMALEALGLSPVGYNAIPAVHPEKERATKEAG 232
>ILVD_THET8 (Q5SIY0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 555 Score = 31.6 bits (70), Expect = 2.2 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 11/154 (7%) Frame = +3 Query: 147 VARRIVRDCAEFLAKAFQKHGSFPLACC-KAVIQTILAVTQRSF-GAQRFQ*AVGGGTGH 320 V+R ++ D E +A+ + G L+ C K + T + V + G + + G Sbjct: 92 VSREVIADSVELIAQGYLYDGMVGLSACDKTIPGTAMGVIRSGVPGMILYGGTIAPGEWQ 151 Query: 321 GREAHESQSKRGQQD*EVARDCHRATQEHAAGDESERGLIEDERRR-------GEQFVGS 479 GR+ + A + AAG SE L+E ERR G Q+ + Sbjct: 152 GRKL-------------TIVEVFEAVGQRAAGKISEEELLEIERRAIPGPGACGGQYTAN 198 Query: 480 NMASR*QDGAFASVG--SFP*L**CSTRCTKQAG 575 MA + + VG + P + R TK+AG Sbjct: 199 TMAMALEALGLSPVGYNAIPAVHPEKERATKEAG 232
>MIB2_HUMAN (Q96AX9) Ubiquitin ligase protein MIB2 (EC 6.3.2.-) (Mind bomb| homolog 2) (Zinc finger ZZ type with ankyrin repeat domain protein 1) (Skeletrophin) (Novelzin) (Novel zinc finger protein) (Putative NF-kappa-B-activating protein 002N) Length = 1013 Score = 31.2 bits (69), Expect = 2.8 Identities = 17/38 (44%), Positives = 20/38 (52%) Frame = -2 Query: 157 RRATGRQCRMTSTRPKMEPTFHRLLCICATIPEHDPSP 44 RRATGR R + RP +P+ HR A P DP P Sbjct: 29 RRATGRPDRSRAARPTTDPSAHRSR---AAPPNMDPDP 63
>IF2P_SULAC (P95691) Probable translation initiation factor IF-2| Length = 602 Score = 30.8 bits (68), Expect = 3.7 Identities = 11/41 (26%), Positives = 25/41 (60%) Frame = +1 Query: 40 EEVRDHALVLLHRCIVVDGMSVPSSAWLMSFDIVFQLLDEL 162 E+ +++ ++ R + G+ +P L+S DI++QL+D + Sbjct: 407 EKAKEYGIIAAFRVKPLSGIEIPEKIKLISDDIIYQLMDNI 447
>Y690_BORPE (Q7W014) UPF0042 protein BP0690| Length = 290 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +1 Query: 94 GMSVPSSAWLMSFDIVFQLLDELLEIAQNFSPKHFRNMEASLLHAV 231 G P + WL FDIV Q++D++ + + P++ ++ L A+ Sbjct: 206 GRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAI 251
>Y4511_BORBR (Q7WEX0) UPF0042 protein BB4511| Length = 290 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +1 Query: 94 GMSVPSSAWLMSFDIVFQLLDELLEIAQNFSPKHFRNMEASLLHAV 231 G P + WL FDIV Q++D++ + + P++ ++ L A+ Sbjct: 206 GRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAI 251
>Y4038_BORPA (Q7W3J5) UPF0042 protein BPP4038| Length = 290 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/46 (28%), Positives = 25/46 (54%) Frame = +1 Query: 94 GMSVPSSAWLMSFDIVFQLLDELLEIAQNFSPKHFRNMEASLLHAV 231 G P + WL FDIV Q++D++ + + P++ ++ L A+ Sbjct: 206 GRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAI 251
>IFN_ANAPL (P51526) Interferon precursor| Length = 191 Score = 30.0 bits (66), Expect = 6.3 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -3 Query: 486 PCCFPQTALXXXXXXXXXXXRFHHQQHVLE*LCGSLLQPLSPAAPSYFGFHELLCHVQY 310 PC FP T L H QH+ + +L P +PA + H+LL +Q+ Sbjct: 66 PCSFPDTLLDTNDTQQAAHTALHLLQHLFD----TLSSPSTPAHWLHTARHDLLNQLQH 120
>Y364_MYCPN (P75417) Hypothetical protein MPN364 (H91_orf677)| Length = 677 Score = 30.0 bits (66), Expect = 6.3 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = +1 Query: 295 KLWVEVLDMAEKLMKAKVRGGSRTERLQETATELLKNMLLVMKASGVLSRTSAGGESSLW 474 +LW ++ AE KAK +G S+ + ++T T + L+ S S T+ G+++ Sbjct: 94 ELWEKIQKAAETNGKAKEQGKSKKQGTEKTTT-----LTLLKTESSQQSNTTKDGKATSD 148 Query: 475 EA---TWLHVNKMAPSLQSVVF 531 EA TW K+ L+ F Sbjct: 149 EAIKKTWGDYQKVENGLKGYTF 170
>UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 463 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +1 Query: 457 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 576 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 463 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +1 Query: 457 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 576 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +1 Query: 457 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 576 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)| (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme E1C) (Ubiquitin-activating enzyme E1C) Length = 462 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +1 Query: 457 GESSLWEATWLHVNKMAPSLQSVVFPDYDDAVQGAQSKLD 576 G++ WE W HV K PD++ + + Q LD Sbjct: 29 GDTGDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLD 68
>IF2P_SULTO (Q976A1) Probable translation initiation factor IF-2| Length = 602 Score = 29.6 bits (65), Expect = 8.3 Identities = 10/41 (24%), Positives = 27/41 (65%) Frame = +1 Query: 40 EEVRDHALVLLHRCIVVDGMSVPSSAWLMSFDIVFQLLDEL 162 +E +++ ++ R + G+ VP++ L+ +I++QL+D++ Sbjct: 408 QEAKEYGIIAAFRVKPLQGIEVPNNIKLIYSEIIYQLIDDI 448 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,223,447 Number of Sequences: 219361 Number of extensions: 1825448 Number of successful extensions: 5900 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5702 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5888 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
