ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags19a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
2dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
3dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
4dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
5dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clon... 440 e-120
6gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence 363 4e-97
7dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
8dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic D... 163 7e-37
9ref|XM_467454.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
10dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
13ref|NM_106301.3| Arabidopsis thaliana transcription factor AT1G7... 50 0.007
14ref|NM_202427.1| Arabidopsis thaliana unknown protein AT1G76510 ... 50 0.007
15emb|BX814030.1|CNS0AEHL Arabidopsis thaliana Full-length cDNA Co... 50 0.007
16emb|BX816006.1|CNS0ADDY Arabidopsis thaliana Full-length cDNA Co... 50 0.007
17emb|BX814273.1|CNS0ADPW Arabidopsis thaliana Full-length cDNA Co... 50 0.007
18emb|BX814039.1|CNS0ADHH Arabidopsis thaliana Full-length cDNA Co... 50 0.007
19emb|BX817155.1|CNS0AD17 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
20gb|AC008697.7| Homo sapiens chromosome 5 clone CTB-70D3, complet... 44 0.43
21gb|AC008703.6| Homo sapiens chromosome 5 clone CTB-76P12, comple... 44 0.43
22gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, comple... 44 0.43
23emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.7
24gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, com... 42 1.7
25ref|NM_101944.2| Arabidopsis thaliana transcription factor AT1G2... 40 6.7
26gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence 40 6.7
27gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete s... 40 6.7
28gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosom... 40 6.7
29emb|BX813771.1|CNS0ADG4 Arabidopsis thaliana Full-length cDNA Co... 40 6.7
30gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete... 40 6.7
31gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genom... 40 6.7

>dbj|AK101550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033048O14, full
            insert sequence
          Length = 2267

 Score =  440 bits (222), Expect = e-120
 Identities = 330/366 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaggacacctaccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaa 60
            ||||||||| |||||||||||||| | |    | ||||| ||  |||| |||||||||||
Sbjct: 1515 aaggacaccgaccttggaagatgacaggattgtaccatataaacctgacaagctacaaaa 1574

                                                                        
Query: 61   tgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcggag 120
            |||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1575 tgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcggag 1634

                                                                        
Query: 121  aactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggtaca 180
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1635 aaccaaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggtaca 1694

                                                                        
Query: 181  tgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactagataa 240
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 1695 tgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaactagacaa 1754

                                                                        
Query: 241  tccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcctca 300
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1755 tccttggggtgttactccattcaagaaggttattagtttgccctcccgcattgatcctca 1814

                                                                        
Query: 301  tcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttgagca 360
            |||||| || |||||||||||||||||||| ||  ||||||| ||||||||||| |||||
Sbjct: 1815 tcaaacttcggcagttgtcactctccatggacagctatttgtccgtgcaccattcgagca 1874

                  
Query: 361  gtcaaa 366
            ||||||
Sbjct: 1875 gtcaaa 1880



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>dbj|AK099075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170P10, full
            insert sequence
          Length = 2308

 Score =  440 bits (222), Expect = e-120
 Identities = 330/366 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaggacacctaccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaa 60
            ||||||||| |||||||||||||| | |    | ||||| ||  |||| |||||||||||
Sbjct: 1458 aaggacaccgaccttggaagatgacaggattgtaccatataaacctgacaagctacaaaa 1517

                                                                        
Query: 61   tgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcggag 120
            |||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1518 tgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcggag 1577

                                                                        
Query: 121  aactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggtaca 180
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1578 aaccaaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggtaca 1637

                                                                        
Query: 181  tgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactagataa 240
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 1638 tgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaactagacaa 1697

                                                                        
Query: 241  tccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcctca 300
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1698 tccttggggtgttactccattcaagaaggttattagtttgccctcccgcattgatcctca 1757

                                                                        
Query: 301  tcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttgagca 360
            |||||| || |||||||||||||||||||| ||  ||||||| ||||||||||| |||||
Sbjct: 1758 tcaaacttcggcagttgtcactctccatggacagctatttgtccgtgcaccattcgagca 1817

                  
Query: 361  gtcaaa 366
            ||||||
Sbjct: 1818 gtcaaa 1823



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>dbj|AK073058.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033020C22, full
            insert sequence
          Length = 2286

 Score =  440 bits (222), Expect = e-120
 Identities = 330/366 (90%)
 Strand = Plus / Plus

                                                                        
Query: 1    aaggacacctaccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaa 60
            ||||||||| |||||||||||||| | |    | ||||| ||  |||| |||||||||||
Sbjct: 1474 aaggacaccgaccttggaagatgacaggattgtaccatataaacctgacaagctacaaaa 1533

                                                                        
Query: 61   tgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcggag 120
            |||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 1534 tgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcggag 1593

                                                                        
Query: 121  aactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggtaca 180
            ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1594 aaccaaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggtaca 1653

                                                                        
Query: 181  tgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactagataa 240
            |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 1654 tgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaactagacaa 1713

                                                                        
Query: 241  tccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcctca 300
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1714 tccttggggtgttactccattcaagaaggttattagtttgccctcccgcattgatcctca 1773

                                                                        
Query: 301  tcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttgagca 360
            |||||| || |||||||||||||||||||| ||  ||||||| ||||||||||| |||||
Sbjct: 1774 tcaaacttcggcagttgtcactctccatggacagctatttgtccgtgcaccattcgagca 1833

                  
Query: 361  gtcaaa 366
            ||||||
Sbjct: 1834 gtcaaa 1839



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>dbj|AK071559.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099P16, full
           insert sequence
          Length = 1255

 Score =  440 bits (222), Expect = e-120
 Identities = 330/366 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacacctaccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaa 60
           ||||||||| |||||||||||||| | |    | ||||| ||  |||| |||||||||||
Sbjct: 437 aaggacaccgaccttggaagatgacaggattgtaccatataaacctgacaagctacaaaa 496

                                                                       
Query: 61  tgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcggag 120
           |||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 497 tgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcggag 556

                                                                       
Query: 121 aactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggtaca 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 557 aaccaaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggtaca 616

                                                                       
Query: 181 tgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactagataa 240
           |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 617 tgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaactagacaa 676

                                                                       
Query: 241 tccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcctca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 677 tccttggggtgttactccattcaagaaggttattagtttgccctcccgcattgatcctca 736

                                                                       
Query: 301 tcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttgagca 360
           |||||| || |||||||||||||||||||| ||  ||||||| ||||||||||| |||||
Sbjct: 737 tcaaacttcggcagttgtcactctccatggacagctatttgtccgtgcaccattcgagca 796

                 
Query: 361 gtcaaa 366
           ||||||
Sbjct: 797 gtcaaa 802



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>dbj|AK064549.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-B09, full
           insert sequence
          Length = 1331

 Score =  440 bits (222), Expect = e-120
 Identities = 330/366 (90%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggacacctaccttggaagatgaaaaggcgatgccatacaagtctgagaagctacaaaa 60
           ||||||||| |||||||||||||| | |    | ||||| ||  |||| |||||||||||
Sbjct: 634 aaggacaccgaccttggaagatgacaggattgtaccatataaacctgacaagctacaaaa 693

                                                                       
Query: 61  tgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcggag 120
           |||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| ||||||||
Sbjct: 694 tgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcggag 753

                                                                       
Query: 121 aactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggtaca 180
           ||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 754 aaccaaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggtaca 813

                                                                       
Query: 181 tgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactagataa 240
           |||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||
Sbjct: 814 tgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaactagacaa 873

                                                                       
Query: 241 tccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcctca 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 874 tccttggggtgttactccattcaagaaggttattagtttgccctcccgcattgatcctca 933

                                                                       
Query: 301 tcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttgagca 360
           |||||| || |||||||||||||||||||| ||  ||||||| ||||||||||| |||||
Sbjct: 934 tcaaacttcggcagttgtcactctccatggacagctatttgtccgtgcaccattcgagca 993

                 
Query: 361 gtcaaa 366
           ||||||
Sbjct: 994 gtcaaa 999



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>gb|BT016983.1| Zea mays clone EK07D2304B06.c mRNA sequence
          Length = 1263

 Score =  363 bits (183), Expect = 4e-97
 Identities = 279/311 (89%)
 Strand = Plus / Plus

                                                                       
Query: 58  aaatgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcg 117
           |||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct: 495 aaatgactcgatggttattgacatgggcccccctgctgattgggtgaaaataaatgttag 554

                                                                       
Query: 118 gagaactaaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggt 177
           || ||||||||||||||||||||||||||| |||||||||||||||||  | ||||||||
Sbjct: 555 gaaaactaaagattgctatgaagtctatgcgttggttcctggccttctgagggaagaggt 614

                                                                       
Query: 178 acatgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaactaga 237
           |||||||||||| || || ||||| || ||||||||||| ||||||||||| ||| | ||
Sbjct: 615 acatgttcagtccgacccagctggtcgtttgatagttactggagagcctgagcaattgga 674

                                                                       
Query: 238 taatccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgatcc 297
           ||| || |||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 675 taacccatggggtgtcactccattcaagaaggtcattagtttgccttcccgcattgaccc 734

                                                                       
Query: 298 tcatcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccatttga 357
           ||| |||||||| ||||||||||| |||||||||||  ||||||| ||||||||||||||
Sbjct: 735 tcaccaaacctccgcagttgtcaccctccatgggcagctatttgtgcgtgcaccatttga 794

                      
Query: 358 gcagtcaaaat 368
            || |||||||
Sbjct: 795 acaatcaaaat 805



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  163 bits (82), Expect = 7e-37
 Identities = 94/98 (95%)
 Strand = Plus / Plus

                                                                            
Query: 174      aggtacatgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaac 233
                ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 24635024 aggtacatgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaac 24635083

                                                      
Query: 234      tagataatccttggggtgttactccattcaagaaggtc 271
                |||| |||||||||||||||||||||||||||||||||
Sbjct: 24635084 tagacaatccttggggtgttactccattcaagaaggtc 24635121



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Plus

                                                                            
Query: 267      aggtcattagtttgccctcccgcattgatcctcatcaaacctcagcagttgtcactctcc 326
                |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 24635205 aggttattagtttgccctcccgcattgatcctcatcaaacttcggcagttgtcactctcc 24635264

                                                        
Query: 327      atgggcaattatttgttcgtgcaccatttgagcagtcaaa 366
                |||| ||  ||||||| ||||||||||| |||||||||||
Sbjct: 24635265 atggacagctatttgtccgtgcaccattcgagcagtcaaa 24635304



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                      
Query: 125      aaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggta 178
                ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 24634670 aaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggta 24634723



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 58       aaatgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcg 117
                ||||||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| |||||
Sbjct: 24634350 aaatgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcg 24634409

                      
Query: 118      gagaac 123
                ||||||
Sbjct: 24634410 gagaac 24634415



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 1        aaggacacctaccttggaagatga 24
                ||||||||| ||||||||||||||
Sbjct: 24634067 aaggacaccgaccttggaagatga 24634090



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>dbj|AP003539.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0040H10
          Length = 173301

 Score =  163 bits (82), Expect = 7e-37
 Identities = 94/98 (95%)
 Strand = Plus / Plus

                                                                          
Query: 174    aggtacatgttcagtcagatcctgctggccgcttgatagttacaggagagcctgaacaac 233
              ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||
Sbjct: 118217 aggtacatgttcagtcagatcctgctggccgtttgatagttactggagagcctgagcaac 118276

                                                    
Query: 234    tagataatccttggggtgttactccattcaagaaggtc 271
              |||| |||||||||||||||||||||||||||||||||
Sbjct: 118277 tagacaatccttggggtgttactccattcaagaaggtc 118314



 Score =  135 bits (68), Expect = 2e-28
 Identities = 92/100 (92%)
 Strand = Plus / Plus

                                                                          
Query: 267    aggtcattagtttgccctcccgcattgatcctcatcaaacctcagcagttgtcactctcc 326
              |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 118398 aggttattagtttgccctcccgcattgatcctcatcaaacttcggcagttgtcactctcc 118457

                                                      
Query: 327    atgggcaattatttgttcgtgcaccatttgagcagtcaaa 366
              |||| ||  ||||||| ||||||||||| |||||||||||
Sbjct: 118458 atggacagctatttgtccgtgcaccattcgagcagtcaaa 118497



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 52/54 (96%)
 Strand = Plus / Plus

                                                                    
Query: 125    aaagattgctatgaagtctatgcattggttcctggccttcttcgtgaagaggta 178
              ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 117863 aaagattgctatgaagtctatgcattggttcctggccttctgcgtgaggaggta 117916



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                          
Query: 58     aaatgactcgacagttattgacatgggccctcctgctgattgggtgaagataaatgttcg 117
              ||||||||| |  ||| ||||| | |||||||| ||||||||||| |||||||| |||||
Sbjct: 117543 aaatgactcaatggttcttgaccttggccctccagctgattgggtaaagataaacgttcg 117602

                    
Query: 118    gagaac 123
              ||||||
Sbjct: 117603 gagaac 117608



 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 1      aaggacacctaccttggaagatga 24
              ||||||||| ||||||||||||||
Sbjct: 117260 aaggacaccgaccttggaagatga 117283



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>ref|XM_467454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2072

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                        
Query: 89   cctgctgattgggtgaagataaatgttcggagaactaaagattgctatgaagtctatgca 148
            ||||| || ||||||||||| ||||| ||    ||||||||||| |  ||| ||||||| 
Sbjct: 1298 cctgccgagtgggtgaagattaatgtacgacagactaaagattgtttcgaaatctatgct 1357

                                                                 
Query: 149  ttggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgctgg 201
             |||||||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 1358 ctggttcctggacttctacgcgaagaggtgcatgttcagtcagatcctgctgg 1410



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Plus

                                                                        
Query: 236  gataatccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgat 295
            ||||||||||||||  | |||||||||||||||||  | | | |||| |   | || |||
Sbjct: 1445 gataatccttgggggatcactccattcaagaaggtggtcaatctgccattgaggatcgat 1504

                                                                        
Query: 296  cctcatcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccattt 355
            ||||||||||| || || |||||||| || ||||| ||| ||||||||||||||||||||
Sbjct: 1505 cctcatcaaacatccgccgttgtcacgcttcatggccaactatttgttcgtgcaccattt 1564

             
Query: 356  g 356
            |
Sbjct: 1565 g 1565



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>dbj|AK107036.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B09, full
            insert sequence
          Length = 2072

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                        
Query: 89   cctgctgattgggtgaagataaatgttcggagaactaaagattgctatgaagtctatgca 148
            ||||| || ||||||||||| ||||| ||    ||||||||||| |  ||| ||||||| 
Sbjct: 1298 cctgccgagtgggtgaagattaatgtacgacagactaaagattgtttcgaaatctatgct 1357

                                                                 
Query: 149  ttggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgctgg 201
             |||||||||| ||||| || |||||||| |||||||||||||||||||||||
Sbjct: 1358 ctggttcctggacttctacgcgaagaggtgcatgttcagtcagatcctgctgg 1410



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 100/121 (82%)
 Strand = Plus / Plus

                                                                        
Query: 236  gataatccttggggtgttactccattcaagaaggtcattagtttgccctcccgcattgat 295
            ||||||||||||||  | |||||||||||||||||  | | | |||| |   | || |||
Sbjct: 1445 gataatccttgggggatcactccattcaagaaggtggtcaatctgccattgaggatcgat 1504

                                                                        
Query: 296  cctcatcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcaccattt 355
            ||||||||||| || || |||||||| || ||||| ||| ||||||||||||||||||||
Sbjct: 1505 cctcatcaaacatccgccgttgtcacgcttcatggccaactatttgttcgtgcaccattt 1564

             
Query: 356  g 356
            |
Sbjct: 1565 g 1565



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 293      gatcctcatcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcacca 352
                |||||||||||||| || || |||||||| || ||||| ||| |||||||||||||||||
Sbjct: 29630304 gatcctcatcaaacatccgccgttgtcacgcttcatggccaactatttgttcgtgcacca 29630245

                    
Query: 353      tttg 356
                ||||
Sbjct: 29630244 tttg 29630241



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 174      aggtacatgttcagtcagatcctgctgg 201
                |||| |||||||||||||||||||||||
Sbjct: 29630502 aggtgcatgttcagtcagatcctgctgg 29630475



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 236      gataatccttggggtgttactccattcaagaaggt 270
                ||||||||||||||  | |||||||||||||||||
Sbjct: 29630440 gataatccttgggggatcactccattcaagaaggt 29630406



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>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1479_B12
          Length = 127089

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 293   gatcctcatcaaacctcagcagttgtcactctccatgggcaattatttgttcgtgcacca 352
             |||||||||||||| || || |||||||| || ||||| ||| |||||||||||||||||
Sbjct: 88025 gatcctcatcaaacatccgccgttgtcacgcttcatggccaactatttgttcgtgcacca 87966

                 
Query: 353   tttg 356
             ||||
Sbjct: 87965 tttg 87962



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 174   aggtacatgttcagtcagatcctgctgg 201
             |||| |||||||||||||||||||||||
Sbjct: 88223 aggtgcatgttcagtcagatcctgctgg 88196



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 236   gataatccttggggtgttactccattcaagaaggt 270
             ||||||||||||||  | |||||||||||||||||
Sbjct: 88161 gataatccttgggggatcactccattcaagaaggt 88127



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>ref|NM_106301.3| Arabidopsis thaliana transcription factor AT1G76510 transcript
            variant AT1G76510.1 mRNA, complete cds
          Length = 1741

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1320 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1368



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>ref|NM_202427.1| Arabidopsis thaliana unknown protein AT1G76510 transcript variant
            AT1G76510.2 mRNA, complete cds
          Length = 1720

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1299 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1347



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>emb|BX814030.1|CNS0AEHL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB52ZH10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1387

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1225 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1273



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>emb|BX816006.1|CNS0ADDY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH22ZD08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1576

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1206 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1254



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>emb|BX814273.1|CNS0ADPW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB65ZF03 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1652

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1237 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1285



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>emb|BX814039.1|CNS0ADHH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB53ZD02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1633

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1299 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1347



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>emb|BX817155.1|CNS0AD17 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH8ZD07 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1684

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                             
Query: 150  tggttcctggccttcttcgtgaagaggtacatgttcagtcagatcctgc 198
            |||| ||||| |||||||| |||||||| | |||||||||||| |||||
Sbjct: 1322 tggtacctggacttcttcgcgaagaggtccgtgttcagtcagaccctgc 1370



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>gb|AC008697.7| Homo sapiens chromosome 5 clone CTB-70D3, complete sequence
          Length = 120994

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 41     aagtctgagaagctacaaaatg 62
              ||||||||||||||||||||||
Sbjct: 120642 aagtctgagaagctacaaaatg 120621



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>gb|AC008703.6| Homo sapiens chromosome 5 clone CTB-76P12, complete sequence
          Length = 214187

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 41    aagtctgagaagctacaaaatg 62
             ||||||||||||||||||||||
Sbjct: 35955 aagtctgagaagctacaaaatg 35934



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>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 364    aaaatcatgacactctacttgacaaa 389
              |||||||||||| |||||||||||||
Sbjct: 111736 aaaatcatgacagtctacttgacaaa 111711



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>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16
          Length = 346879

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 290    attgatcctcatcaaacctcagcag 314
              |||||||| ||||||||||||||||
Sbjct: 112182 attgatccgcatcaaacctcagcag 112206



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>gb|AC016779.5| Genomic sequence for Oryza sativa clone 10N6, complete sequence
          Length = 140234

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 96    attgggtgaagataaatgttc 116
             |||||||||||||||||||||
Sbjct: 28267 attgggtgaagataaatgttc 28287



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>ref|NM_101944.2| Arabidopsis thaliana transcription factor AT1G20910 mRNA, complete
            cds
          Length = 1638

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   tgctgattgggtgaagataaatgt 114
            |||||| |||||||||||||||||
Sbjct: 1099 tgctgactgggtgaagataaatgt 1122



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>gb|BT018486.1| Zea mays clone EL01N0424E08.d mRNA sequence
          Length = 1830

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 33/36 (91%), Gaps = 1/36 (2%)
 Strand = Plus / Plus

                                                
Query: 236  gataatccttggggtgtt-actccattcaagaaggt 270
            |||||||||||||| | | |||||||||||||||||
Sbjct: 1602 gataatccttggggggatcactccattcaagaaggt 1637



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>gb|AC144806.10| Medicago truncatula clone mth2-34h22, complete sequence
          Length = 124550

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tctgagaagctacaaaatga 63
              ||||||||||||||||||||
Sbjct: 105103 tctgagaagctacaaaatga 105084



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>gb|AC140489.2| Mus musculus BAC clone RP24-144C10 from chromosome 1, complete sequence
          Length = 194368

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     atgccatacaagtctgagaa 51
              ||||||||||||||||||||
Sbjct: 110504 atgccatacaagtctgagaa 110485



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>emb|BX813771.1|CNS0ADG4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB39ZB10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1545

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 91   tgctgattgggtgaagataaatgt 114
            |||||| |||||||||||||||||
Sbjct: 1061 tgctgactgggtgaagataaatgt 1084



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>gb|AC073050.5| Homo sapiens BAC clone RP11-70E4 from 2, complete sequence
          Length = 135586

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   atgttgccttgctggtggga 421
             ||||||||||||||||||||
Sbjct: 22779 atgttgccttgctggtggga 22798



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>gb|AC007369.2| Arabidopsis thaliana chromosome I BAC F9H16 genomic sequence, complete
             sequence
          Length = 103192

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 91    tgctgattgggtgaagataaatgt 114
             |||||| |||||||||||||||||
Sbjct: 69945 tgctgactgggtgaagataaatgt 69968


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,925,471
Number of Sequences: 3902068
Number of extensions: 3925471
Number of successful extensions: 70538
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70426
Number of HSP's gapped (non-prelim): 110
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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